GWAS0000012 | GDV

Genome Location

GWAS Overview


GWAS Label	GWAS0000012 [ MapViewer ]
Published Symbol	N/A
Trait Name	Fruit firmness
Trait Alias	N/A
GWAS Marker	VaccDscaff4_29010369
GWAS Study	Blueberry-Fruit_traits-Njuguna-2023
Genome Assembly	Vaccinium corymbosum cv. Draper v1.0 genome sequence
Statistical Mothod	polyRAD discrete
Experimental Model	N/A
GWAS Panel	N/A
LOD	N/A
P Value	≤0.05
R2	N/A
Unique key	343-FIRM_VaccDscaff4_29010369
Effect	-14.489928541662
FDR	0.0002447369150882
Comments	N/A

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Vaccinium Trait Ontology**
Term	Definition
66:Fruit firmness	Fruit firmness

Genome Location


Name	Type	Location	Analysis	MapViewer
VaccDscaff4	supercontig	VaccDscaff4:29010369..29010369	Vaccinium corymbosum cv. Draper v1.0 genome sequence	View

Publications


Year	Publication
2023	Njuguna JN, Clark LV, Lipka AE, Anzoua KG, Bagmet L, Chebukin P, Dwiyanti MS, Dzyubenko E, Dzyubenko N, Ghimire BK, Jin X, Johnson DA, Kjeldsen JB, Nagano H, de Bem Oliveira I, Peng J, Petersen KK, Sabitov A, Seong ES, Yamada T, Yoo JH, Yu CY, Zhao H, Munoz P, Long SP, Sacks EJ. Impact of genotype-calling methodologies on genome-wide association and genomic prediction in polyploids.. The plant genome. 2023 Oct 30; e20401.

Properties


Property Name	Value
Unique key	343-FIRM_VaccDscaff4_29010369
Effect	-14.489928541662
P value	≤0.05
FDR	0.0002447369150882
Statistical method	polyRAD discrete