GWAS0000082 | GDV

Genome Location

GWAS Overview


GWAS Label	GWAS0000082 [ MapViewer ]
Published Symbol	N/A
Trait Name	Fruit firmness
Trait Alias	N/A
GWAS Marker	VaccDscaff1_35315868
GWAS Study	Blueberry-Fruit_traits-Njuguna-2023
Genome Assembly	Vaccinium corymbosum cv. Draper v1.0 genome sequence
Statistical Mothod	EBG GATK
Experimental Model	N/A
GWAS Panel	N/A
LOD	N/A
P Value	≤0.05
R2	N/A
Unique key	343-FIRM_VaccDscaff1_35315868
Effect	6.6599840141467
FDR	0.029318636139213
Comments	N/A

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Vaccinium Trait Ontology**
Term	Definition
66:Fruit firmness	Fruit firmness

Genome Location


Name	Type	Location	Analysis	MapViewer
VaccDscaff1	supercontig	VaccDscaff1:35315868..35315868	Vaccinium corymbosum cv. Draper v1.0 genome sequence	View

Publications


Year	Publication
2023	Njuguna JN, Clark LV, Lipka AE, Anzoua KG, Bagmet L, Chebukin P, Dwiyanti MS, Dzyubenko E, Dzyubenko N, Ghimire BK, Jin X, Johnson DA, Kjeldsen JB, Nagano H, de Bem Oliveira I, Peng J, Petersen KK, Sabitov A, Seong ES, Yamada T, Yoo JH, Yu CY, Zhao H, Munoz P, Long SP, Sacks EJ. Impact of genotype-calling methodologies on genome-wide association and genomic prediction in polyploids.. The plant genome. 2023 Oct 30; e20401.

Properties


Property Name	Value
Unique key	343-FIRM_VaccDscaff1_35315868
Effect	6.6599840141467
P value	≤0.05
FDR	0.029318636139213
Statistical method	EBG GATK