GWAS0000123 | GDV

Genome Location

GWAS Overview


GWAS Label	GWAS0000123 [ MapViewer ]
Published Symbol	N/A
Trait Name	fruit weight
Trait Alias	N/A
GWAS Marker	VaccDscaff4_5909118
GWAS Study	Blueberry-Fruit_traits-Njuguna-2023
Genome Assembly	Vaccinium corymbosum cv. Draper v1.0 genome sequence
Statistical Mothod	polyRAD continuous
Experimental Model	N/A
GWAS Panel	N/A
LOD	N/A
P Value	≤0.05
R2	N/A
Unique key	343-FWT_VaccDscaff4_5909118.2
Effect	-0.61936485318085
FDR	0.0042918834160424
Comments	N/A

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Vaccinium Trait Ontology**
Term	Definition
66:fruit weight	fruit weight

Genome Location


Name	Type	Location	Analysis	MapViewer
VaccDscaff4	supercontig	VaccDscaff4:5909118..5909118	Vaccinium corymbosum cv. Draper v1.0 genome sequence	View

Publications


Year	Publication
2023	Njuguna JN, Clark LV, Lipka AE, Anzoua KG, Bagmet L, Chebukin P, Dwiyanti MS, Dzyubenko E, Dzyubenko N, Ghimire BK, Jin X, Johnson DA, Kjeldsen JB, Nagano H, de Bem Oliveira I, Peng J, Petersen KK, Sabitov A, Seong ES, Yamada T, Yoo JH, Yu CY, Zhao H, Munoz P, Long SP, Sacks EJ. Impact of genotype-calling methodologies on genome-wide association and genomic prediction in polyploids.. The plant genome. 2023 Oct 30; e20401.

Properties


Property Name	Value
Unique key	343-FWT_VaccDscaff4_5909118.2
Effect	-0.61936485318085
P value	≤0.05
FDR	0.0042918834160424
Statistical method	polyRAD continuous