GWAS0000300 | GDV

Genome Location

GWAS Overview


GWAS Label	GWAS0000300 [ MapViewer ]
Published Symbol	N/A
Trait Name	Stem scar diameter
Trait Alias	N/A
GWAS Marker	VaccDscaff17_16690066
GWAS Study	Blueberry-Fruit_traits-Njuguna-2023
Genome Assembly	Vaccinium corymbosum cv. Draper v1.0 genome sequence
Statistical Mothod	EBG GATK
Experimental Model	N/A
GWAS Panel	N/A
LOD	N/A
P Value	≤0.05
R2	N/A
Unique key	343-FRSCD_VaccDscaff17_16690066
Effect	0.320362997
FDR	0.000334185
Comments	N/A

Terms

The following terms have been associated with this GWAS:

Vocabulary: **Vaccinium Trait Ontology**
Term	Definition
66:Stem scar diameter	Stem scar diameter

Genome Location


Name	Type	Location	Analysis	MapViewer
VaccDscaff17	supercontig	VaccDscaff17:16690066..16690066	Vaccinium corymbosum cv. Draper v1.0 genome sequence	View

Publications


Year	Publication
2023	Njuguna JN, Clark LV, Lipka AE, Anzoua KG, Bagmet L, Chebukin P, Dwiyanti MS, Dzyubenko E, Dzyubenko N, Ghimire BK, Jin X, Johnson DA, Kjeldsen JB, Nagano H, de Bem Oliveira I, Peng J, Petersen KK, Sabitov A, Seong ES, Yamada T, Yoo JH, Yu CY, Zhao H, Munoz P, Long SP, Sacks EJ. Impact of genotype-calling methodologies on genome-wide association and genomic prediction in polyploids.. The plant genome. 2023 Oct 30; e20401.

Properties


Property Name	Value
Unique key	343-FRSCD_VaccDscaff17_16690066
Effect	0.320362997
P value	≤0.05
FDR	0.000334185
Statistical method	EBG GATK