409500_K63, 409500_K63 (genetic_marker) Vaccinium macrocarpon | GDV

Marker Overview

Marker Overview


Name	409500_K63
Genbank ID	KP279177
Type	EST-SSR
Species	Vaccinium macrocarpon
Repeat Motif	(CA)22
Primer 1	409500_K63.forward primer: GATTCCTGGGTGTAGTTCTGT
Primer 2	409500_K63.reverse primer: CTTAGTCTTTAATGCTGGCTCA
Max Length	395
Publication	[view all]

References

External references for this genetic_marker


Database	Accession
DB:genbank	KP279177

Publications


Year	Publication
2015	Schlautman B, Fajardo D, Bougie T, Wiesman E, Polashock J, Vorsa N, Steffan S, Zalapa J. Development and validation of 697 novel polymorphic genomic and EST-SSR markers in the American cranberry (Vaccinium macrocarpon Ait.). Molecules (Basel, Switzerland). 2015; 20(2):2001-13.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	Cranberry-CNJ02-1-2007	LG10	N/A	53.03	409500_K63	View
2	Cranberry-Crimson_Queen-2007	LG10	N/A	42.4	409500_K63	View
3	Cranberry-Mullica_Queen-2007	LG10	N/A	63	409500_K63	View
4	Blueberry-F1#10_x_W85-23-F1-2017	LG10	N/A	41.4	409500_K63	View
5	Blueberry-W85-23-2017	LG10	N/A	49	409500_K63	View
6	Cranberry-CNJ02-1-2017	LG10	N/A	44.3	409500_K63	View
7	Cranberry-Crimson_Queen-2017	LG10	N/A	41.2	409500_K63	View
8	Cranberry-Mullica_Queen-2017	LG10	N/A	51.8	409500_K63	View
9	Cranberry-Composite_map-F1	LG10	N/A	35.42	409500_K63	View
10	Cranberry-Crimson_Queen-F1	LG10	N/A	34.6	409500_K63	View
11	Cranberry-Mullica_Queen_1-F1	LG10	N/A	32.83	409500_K63	View

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Vcev1_p0.Chr07	supercontig	Vcev1_p0.Chr07:26335498..26335868 .
chr7_H1	supercontig	chr7_H1:21169402..21169720 .
Vmac_chr10	supercontig	Vmac_chr10:21344726..21345096 .
chr10	supercontig	chr10:21977383..21977724 .
Chr07_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1	chromosome	Chr07_Vaccinium_vitis-idaea_var_RedCandy_RedCandy_UBC_v1:18673417..18673751 .