DW043014 | GDV

EST Overview


Name	DW043014
Unique Name	DW043014
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	533

Libraries


Library Name	Type
LIBEST_018809 Reverse subtracted cDNA library of Vaccinium corymbosum	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of DW043014 vs. TrEMBL
Match: B6EBH3|B6EBH3_VACCO (Putative CBF/DREB transcription factor OS=Vaccinium corymbosum PE=4 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.394e-25
Identity = 66/128 (51.56%), Postives = 66/128 (51.56%), Query Frame = 2

Query:   20 YPTAEMXXXXXXXXXXXXXXXXXXXCLNFADSVWRLPVPVSKXXXXXXXXXXXXXXMFRQQPPXXXXXXXXXXXXXXXXXXXXXEVFDMDELLLNMAEGXXXXXXXXYSGRRFSWDDVGSDVEVSLWS 403
            YPTAEM                   CLNFADSVWRLPVPVSK              MFRQQPP                     EVFDMDELLLNMAEG        YSGRRFSWDDVGSDVEVSLWS
Sbjct:   99 YPTAEMAARAHDVAALALKSESSKACLNFADSVWRLPVPVSKEAEHIRRAAAEAAEMFRQQPPNDGGSVNVVSSDGDGSGGNGSEVFDMDELLLNMAEGPLLSPSPSYSGRRFSWDDVGSDVEVSLWS 226

[Close]

BLAST of DW043014 vs. TrEMBL
Match: B7U4B2|B7U4B2_VACVI (DREB1 OS=Vaccinium vitis-idaea PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.084e-25
Identity = 65/128 (50.78%), Postives = 66/128 (51.56%), Query Frame = 2

Query:   20 YPTAEMXXXXXXXXXXXXXXXXXXXCLNFADSVWRLPVPVSKXXXXXXXXXXXXXXMFRQQPPXXXXXXXXXXXXXXXXXXXXXEVFDMDELLLNMAEGXXXXXXXXYSGRRFSWDDVGSDVEVSLWS 403
            YPTAEM                   CLNFADSVWRLPVPVSK              MFRQQPP                     EVFDMDEL+LNMAEG        YSGRRFSWDDVGSDVEVSLWS
Sbjct:  117 YPTAEMAARAHDVAALALKGESPTACLNFADSVWRLPVPVSKEAEHIRRAAAEAAEMFRQQPPNDDGGVNVVSSDGDGSGGNGSEVFDMDELILNMAEGPLLSPSPSYSGRRFSWDDVGSDVEVSLWS 244

[Close]

BLAST of DW043014 vs. Vitis vinifera peptide
Match: GSVIVT01019860001 (assembled CDS)

HSP 1 Score: 51.2174 bits (121), Expect = 2.760e-7
Identity = 41/128 (32.03%), Postives = 46/128 (35.94%), Query Frame = 2

Query:   20 YPTAEMXXXXXXXXXXXXXXXXXXXCLNFADSVWRLPVPVSKXXXXXXXXXXXXXXMFRQQPPXXXXXXXXXXXXXXXXXXXXXEVFDMDELLLNMAEGXXXXXXXXYSGRRFSWDDVGSDVEVSLWS 403
            YPTAEM                   CLNFADS W LPVPVSK               FR   P                      +FD   LL+ MAE           G  F W+DV  D ++SLWS
Sbjct:   82 YPTAEMAARAHDVAALAFRGRKA--CLNFADSAWSLPVPVSKDSMEIRRAAAAAAEAFR---PQEFQDHSSGDARKESVEAAESLIFDTAGLLITMAEEPLHSPPPCL-GDGFMWEDVELDADMSLWS 203

The following BLAST results are available for this feature:

BLAST of DW043014 vs. TrEMBL
BLAST of DW043014 vs. Vitis vinifera peptide

BLAST of DW043014 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 2


Match Name	E-value	Identity	Description
B6EBH3\|B6EBH3_VACCO	2.394e-25	51.56	Putative CBF/DREB transcription factor OS=Vacciniu...	[more]
B7U4B2\|B7U4B2_VACVI	4.084e-25	50.78	DREB1 OS=Vaccinium vitis-idaea PE=2 SV=1	[more]

BLAST of DW043014 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1


Match Name	E-value	Identity	Description
GSVIVT01019860001	2.760e-7	32.03	assembled CDS	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	Pathogenesis-related transcriptional factor/ERF, DNA-binding	GENE3D	3.30.730.10	no description	coord: 7..38 score: 2.7
None	No IPR available	SEG	seg	seg	coord: 13..31 score: NAcoord: 49..62 score: NAcoord: 70..90 score: NAcoord: 106..113 score
None	No IPR available	SEG	seg	seg	coord: 14..43 score: NAcoord: 51..65 score
None	No IPR available	SEG	seg	seg	coord: 29..50 score

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DW043014 ID=DW043014; Name=DW043014; organism=Vaccinium corymbosum; type=EST; length=533bp
AGCGTGGTCGCGGCCGAGGTACCCGACGGCTGAGATGGCTGCTCGGGCTC
ACGATGTAGCTGCATTGGCGCTGAAAAGTGAGTCGTCGAAGGCCTGTTTG
AATTTCGCAGACTCGGTGTGGCGGTTGCCCGTGCCGGTATCGAAGGAGGC
AGAACATATAAGGAGGGCAGCGGCCGAGGCAGCTGAAATGTTCCGGCAAC
AGCCACCAAACGATGGTGGCAGCGTGAACGTCGTCTCCTCTGATGGAGAT
GGTTCAGGTGGGAATGGGAGTGAGGTTTTTGACATGGATGAACTGCTTTT
GAATATGGCGGAAGGGCCGTTACTGTCTCCCTCGCCTTCTTACTCGGGTC
GTCGGTTCAGCTGGGATGATGTTGGAAGTGATGTTGAGGTCTCGTTGTGG
AGTTAGATTTTAGATGAACGAAATTCCACCCATGGATCATACACGAATTG
AGCCCAAATACCTGCTTTGCTTTATGCCAAAAAAATATGTCATAATTTGG
GTGTAACCCGATGTTAAAACAATGAAATTGAAA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	DNA-binding transcription factor activity

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
noIPR	unintegrated