CV190429

EST Overview
NameCV190429
Unique NameCV190429
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length330
Libraries
Library NameType
LIBEST_016374 Vco01cdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide2011-01-25
InterProScan analysis for Vaccinium corymbosum unigene v12011-01-18
Homology
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BLAST of CV190429 vs. Vitis vinifera peptide
Match: GSVIVT01038573001 (assembled CDS)

HSP 1 Score: 38.891 bits (89), Expect = 6.374e-8
Identity = 14/18 (77.78%), Postives = 16/18 (88.89%), Query Frame = 2 
Query:  212 DYDYTGANPRHDPKRGKP 265
            DYDY  ANP+HDP+RGKP
Sbjct:   57 DYDYAEANPKHDPRRGKP 74

HSP 2 Score: 32.7278 bits (73), Expect = 6.374e-8
Identity = 15/29 (51.72%), Postives = 17/29 (58.62%), Query Frame = 1 
Query:  112 GKAEGFKDNAEPIYSLRKGSVQMNLRKQL 198
            G AEGFKD   PIY L K    +N +K L
Sbjct:   22 GMAEGFKDGTSPIYLLHKDGTLVNSKKLL 50
The following BLAST results are available for this feature:
BLAST of CV190429 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010385730016.374e-877.78assembled CDS[more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 24..37
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CV190429 ID=CV190429; Name=CV190429; organism=Vaccinium corymbosum; type=EST; length=330bp
GGAATTTTACAAACACTTGGCACATTTGCTCAACAAAGTCAGCTATGGCT
TTTAGGATCAAGAACTCCCTTCTGCTTTTCCTCTTTCTACATTATTTCCT
CTATATCTTCAGGCAAAGCTGAGGGATTCAAAGATAATGCGGAACCCATT
TACTCACTTCGCAAGGGAAGTGTTCAAATGAATCTGAGGAAACAATTGGG
TACAGCTGTAGGATTATGATTACACGGGAGCTAACCCTAGGCATGATCCA
AAGAGGGGAAAACCTGGGAAGAACACCTAAATTCTGAGTGAAGTGGCCTG
CCTCGGTGTCCTTATCTAAATAATACACAC
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated