CV190780

EST Overview
NameCV190780
Unique NameCV190780
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length217
Libraries
Library NameType
LIBEST_016374 Vco01cdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide2011-01-25
InterProScan analysis for Vaccinium corymbosum unigene v12011-01-18
Homology
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BLAST of CV190780 vs. Vitis vinifera peptide
Match: GSVIVT01003437001 (assembled CDS)

HSP 1 Score: 53.9138 bits (128), Expect = 1.618e-8
Identity = 31/69 (44.93%), Postives = 44/69 (63.77%), Query Frame = 3 
Query:    6 LSNSVQFLESHKQVLKQNSYNSPPLFANFFTFPQYSTRLTGPNNTVATGQDQYSRTSEKGSTIADVEVT 212
            L   +Q LE+ K + +++  +S  +F+NFFTFPQYST  T  N++ AT +      +EK S IADVEVT
Sbjct:  158 LEQLLQPLEAQKLMKQRSQTDSSTVFSNFFTFPQYSTYSTHYNSSAATKESM----AEKRSAIADVEVT 222
The following BLAST results are available for this feature:
BLAST of CV190780 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010034370011.618e-844.93assembled CDS[more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 6..21
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CV190780 ID=CV190780; Name=CV190780; organism=Vaccinium corymbosum; type=EST; length=217bp
GGAGCTTGAGCAACTCNGTCCAATTCCTCGAATCTCACAAGCAAGTACTC
AAGCAAAATTCCTACAACTCCCCTCCTCTGTTTGCCAATTTCTTTACTTT
CCCTCAGTACTCGACTCGATTGACCGGTCCCAACAACACTGTTGCAACCG
GTCAAGACCAGTACTCGAGGACGTCCGAGAAGGGGTCGACGATTGCGGAC
GTCGAAGTGACCCAAAT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated