DW043413

EST Overview
NameDW043413
Unique NameDW043413
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length552
Libraries
Library NameType
LIBEST_018810 Subtracted cDNA library of Vaccinium corymbosumcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL2011-01-18
InterProScan analysis for Vaccinium corymbosum unigene v12011-01-18
Homology
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BLAST of DW043413 vs. TrEMBL
Match: B2BJD0|B2BJD0_RHOCT (Early light-induced protein 1 OS=Rhododendron catawbiense PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 6.616e-8
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  175 VSPVTGVARGLGYSRTATSSYMPPRQQRNSGRVVRCMAEDSKEEEV 312
            VSPVTGVA+G G SRT   S   PRQ RNSG +VRCMA+D ++EEV
Sbjct:   12 VSPVTGVAKGAGLSRTIPRSCYLPRQGRNSGMLVRCMAKDGRKEEV 57
[Close]
BLAST of DW043413 vs. TrEMBL
Match: B2BJD2|B2BJD2_RHOCT (Early light-induced protein 3 OS=Rhododendron catawbiense PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.129e-7
Identity = 30/46 (65.22%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  175 VSPVTGVARGLGYSRTATSSYMPPRQQRNSGRVVRCMAEDSKEEEV 312
            VSPVTGVA+G G SRT   S   PRQ R+SG +VRCMA+D K+EEV
Sbjct:   12 VSPVTGVAKGAGLSRTIPRSSYLPRQGRDSGMLVRCMAKDGKKEEV 57
[Close]
BLAST of DW043413 vs. TrEMBL
Match: B2BJD1|B2BJD1_RHOCT (Early light-induced protein 2 OS=Rhododendron catawbiense PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.474e-7
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  175 VSPVTGVARGLGYSRTATSSYMPPRQQRNSGRVVRCMAEDSKEEEV 312
            VSPVTGVA+G G +RT   S   PRQ RNSG +VRCMA+D ++EEV
Sbjct:   12 VSPVTGVAKGAGLNRTIPRSCYLPRQGRNSGMLVRCMAKDGRKEEV 57
The following BLAST results are available for this feature:
BLAST of DW043413 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
B2BJD0|B2BJD0_RHOCT6.616e-865.22Early light-induced protein 1 OS=Rhododendron cata... [more]
B2BJD2|B2BJD2_RHOCT1.129e-765.22Early light-induced protein 3 OS=Rhododendron cata... [more]
B2BJD1|B2BJD1_RHOCT1.474e-763.04Early light-induced protein 2 OS=Rhododendron cata... [more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 22..35
score
NoneNo IPR availableSEGsegsegcoord: 16..25
score: NAcoord: 31..44
score
NoneNo IPR availableSEGsegsegcoord: 39..49
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>DW043413 ID=DW043413; Name=DW043413; organism=Vaccinium corymbosum; type=EST; length=552bp
ACAGCCCTTAAGCGTGGTCGCGGCCGAGGTACGCGGGGATAACTCAAAAC
ATACAGAGTACAGACATAGCAGCGAGTAGAAGCTACTACCATAGTAACAC
TGCCAGTAGTTCGAGCATCAAATATACAAAAACTCATAATGGCAACACTC
AATCAGTAATGCAGTCCACCCTCAGTGAGCCCGGTGACCGGCGTCGCCAG
GGGGTTGGGCTACAGCCGGACAGCTACTAGCAGCTACATGCCACCGCGTC
AGCAGAGGAACTCCGGCCGGGTAGTTCGCTGCATGGCTGAGGACAGTAAG
GAGGAGGAAGTAGTACGTAACACCGCAACCTACCACACGGCGTCGGCATC
GGCGCCGTCGTTCACACTGCACGAGTCCTCCCTCACCCCCTCCCCCGGGA
CAACCCCACAGGTTCAGCACCTGAATTTTCTTTTGGACCTTGTTCNCCAT
TTACCGTCGGACCCAACCACCCGACCCAATTNCCGTAACTCCCATGATGG
CTCTGCNCATTACNGTCAACCCTCCAGGTNAATTTGTNCAATTNCGAANT
CC
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated