CV090962

EST Overview
NameCV090962
Unique NameCV090962
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length443
Libraries
Library NameType
LIBEST_014531 cDNA non acclimated Bluecrop librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Homology
[Close]
BLAST of CV090962 vs. DB:swissprot:display
Match: SSY1_SOLTU (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.221e-12
Identity = 35/62 (56.45%), Postives = 40/62 (64.52%), Query Frame = 2 
Query:    2 FSFITSRIXWRH*SLQFITYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYV 187
            FS +TS        L   TY E  SSWEGL++RGM RD +WE AA+ Y QVF W FIDPPYV
Sbjct:  579 FSPLTSEKLLDTLKLAIGTYTEHKSSWEGLMRRGMGRDYSWENAAIQYEQVFTWAFIDPPYV 640
[Close]
BLAST of CV090962 vs. DB:swissprot:display
Match: SSY1_ARATH (Soluble starch synthase, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=At5g24300 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.929e-11
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 2 
Query:   56 TYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYV 187
            TY E   SWEGL++RGM R+ +WE AAV Y QVF W F+DPPYV
Sbjct:  608 TYREYKQSWEGLMRRGMTRNYSWENAAVQYEQVFQWVFMDPPYV 651
[Close]
BLAST of CV090962 vs. DB:swissprot:display
Match: SSY1_ORYSJ (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=Os06g0160700 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.326e-10
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 2 
Query:   56 TYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYVI 190
            TY E  SSWEGL+KRGM  D TW+ AA  Y Q+F W F+D PYV+
Sbjct:  597 TYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPYVM 641
[Close]
BLAST of CV090962 vs. DB:swissprot:display
Match: SSY1_ORYSI (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=OsI_021017 PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 3.326e-10
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 2 
Query:   56 TYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYVI 190
            TY E  SSWEGL+KRGM  D TW+ AA  Y Q+F W F+D PYV+
Sbjct:  597 TYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPYVM 641
[Close]
BLAST of CV090962 vs. DB:swissprot:display
Match: SSY1_WHEAT (Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2)

HSP 1 Score: 62.7734 bits (151), Expect = 7.410e-10
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 2 
Query:   56 TYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYVI 190
            T+ E   SWEGL+KRGM +D TW+ AA  Y Q+F W F+D PYV+
Sbjct:  603 TFREHKPSWEGLMKRGMTKDHTWDHAAEQYEQIFEWAFVDQPYVM 647
[Close]
BLAST of CV090962 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0015s01470.1 ()

HSP 1 Score: 73.559 bits (179), Expect = 5.678e-14
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 2 
Query:   53 ITYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYV 187
            +TY +  SSWEG++KRGM +DSTWE AAV Y QVF W FIDPPY+
Sbjct:  604 MTYRDHKSSWEGIMKRGMVKDSTWENAAVHYEQVFEWAFIDPPYI 648
[Close]
BLAST of CV090962 vs. P. persica 1.0 peptide
Match: ppa002686m ()

HSP 1 Score: 70.4774 bits (171), Expect = 3.529e-13
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 2 
Query:   56 TYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYV 187
            T+ E   SWEGL+KRGM RD TWE AAV Y QVF W FIDPPY+
Sbjct:  601 TFTEYKPSWEGLMKRGMERDFTWESAAVKYEQVFEWAFIDPPYI 644
[Close]
BLAST of CV090962 vs. TrEMBL
Match: B9IDQ2|B9IDQ2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1100713 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.521e-12
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 2 
Query:   53 ITYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYV 187
            +TY +  SSWEG++KRGM +DSTWE AAV Y QVF W FIDPPY+
Sbjct:  604 MTYRDHKSSWEGIMKRGMVKDSTWENAAVHYEQVFEWAFIDPPYI 648
[Close]
BLAST of CV090962 vs. TrEMBL
Match: B3SRP2|B3SRP2_MANES (Starch synthase isoform I OS=Manihot esculenta GN=SSI PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.086e-10
Identity = 28/44 (63.64%), Postives = 34/44 (77.27%), Query Frame = 2 
Query:   56 TYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYV 187
            TY +  SSWEG++KRGM RD+TWE AA+ Y QVF W FID PY+
Sbjct:  589 TYRDYKSSWEGIMKRGMERDNTWENAAIHYEQVFEWAFIDSPYI 632
[Close]
BLAST of CV090962 vs. TrEMBL
Match: Q8GV54|Q8GV54_COLES (Soluble starch synthase I OS=Colocasia esculenta GN=SssI PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.127e-10
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 2 
Query:   41 SLQFITYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYV 187
            +L   TY +   SWEGL+KRGM +D TW+ AA  Y QVF W FIDPPYV
Sbjct:  594 NLAIRTYRDFKPSWEGLMKRGMSKDFTWDNAAAQYEQVFGWAFIDPPYV 642
[Close]
BLAST of CV090962 vs. TrEMBL
Match: Q0WV88|Q0WV88_ARATH (Soluble starch synthase OS=Arabidopsis thaliana GN=At5g24300 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.039e-10
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 2 
Query:   56 TYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYV 187
            TY E   SWEGL++RGM R+ +WE AAV Y QVF W F+DPPYV
Sbjct:  608 TYREYKQSWEGLMRRGMTRNYSWENAAVQYEQVFQWVFMDPPYV 651
[Close]
BLAST of CV090962 vs. TrEMBL
Match: D7M325|D7M325_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489289 PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.039e-10
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 2 
Query:   56 TYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYV 187
            TY E   SWEGL++RGM R+ +WE AAV Y QVF W F+DPPYV
Sbjct:  611 TYREYKESWEGLMRRGMTRNYSWENAAVQYEQVFQWVFMDPPYV 654
[Close]
BLAST of CV090962 vs. TrEMBL
Match: O49064|O49064_MAIZE (Plastid starch synthase I OS=Zea mays GN=Ss1 PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 1.568e-9
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 2 
Query:   56 TYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYVI 190
            TY E  SSWEGL+KRGM +D TW+ AA  Y Q+F W FID PYV+
Sbjct:  596 TYREHKSSWEGLMKRGMSKDFTWDHAAEQYEQIFQWAFIDRPYVM 640
[Close]
BLAST of CV090962 vs. TrEMBL
Match: C0PNE9|C0PNE9_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.568e-9
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 2 
Query:   56 TYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYVI 190
            TY E  SSWEGL+KRGM +D TW+ AA  Y Q+F W FID PYV+
Sbjct:  325 TYREHKSSWEGLMKRGMSKDFTWDHAAEQYEQIFQWAFIDRPYVM 369
[Close]
BLAST of CV090962 vs. TrEMBL
Match: B3TV98|B3TV98_SORBI (Soluble starch synthase I (Fragment) OS=Sorghum bicolor GN=SssI PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.568e-9
Identity = 28/45 (62.22%), Postives = 33/45 (73.33%), Query Frame = 2 
Query:   56 TYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYVI 190
            TY E  SSWEGL+KRGM +D TW+ AA  Y Q+F W FID PYV+
Sbjct:    1 TYKEHKSSWEGLMKRGMSKDFTWDHAAEQYEQIFQWAFIDRPYVM 45
[Close]
BLAST of CV090962 vs. TrEMBL
Match: D3U2H8|D3U2H8_ORYSA (Starch synthase OS=Oryza sativa PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.959e-9
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 2 
Query:   56 TYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYVI 190
            TY E  SSWEGL+KRGM  D TW+ AA  Y Q+F W F+D PYV+
Sbjct:  597 TYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPYVM 641
[Close]
BLAST of CV090962 vs. TrEMBL
Match: D0TZM8|D0TZM8_ORYSI (Soluble starch synthase I OS=Oryza sativa subsp. indica GN=SSI PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.959e-9
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 2 
Query:   56 TYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYVI 190
            TY E  SSWEGL+KRGM  D TW+ AA  Y Q+F W F+D PYV+
Sbjct:  597 TYREHKSSWEGLMKRGMSSDFTWDHAASQYEQIFEWAFMDQPYVM 641
[Close]
BLAST of CV090962 vs. Vitis vinifera peptide
Match: GSVIVT01038557001 (assembled CDS)

HSP 1 Score: 67.781 bits (164), Expect = 1.976e-12
Identity = 29/44 (65.91%), Postives = 33/44 (75.00%), Query Frame = 2 
Query:   56 TYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYV 187
            TY E   SWE L+KRGM +D TW+KAA+ Y QVF W FIDPPYV
Sbjct:  524 TYREHKPSWERLMKRGMEKDYTWDKAALEYEQVFKWAFIDPPYV 567
[Close]
BLAST of CV090962 vs. TAIR peptide
Match: AT5G24300.2 (| Symbols: SSI1 | Glycogen/starch synthases, ADP-glucose type | chr5:8266934-8270860 FORWARD LENGTH=652)

HSP 1 Score: 67.0106 bits (162), Expect = 4.714e-12
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 2 
Query:   56 TYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYV 187
            TY E   SWEGL++RGM R+ +WE AAV Y QVF W F+DPPYV
Sbjct:  608 TYREYKQSWEGLMRRGMTRNYSWENAAVQYEQVFQWVFMDPPYV 651
[Close]
BLAST of CV090962 vs. TAIR peptide
Match: AT5G24300.1 (| Symbols: SSI1, SSI, ATSS1 | Glycogen/starch synthases, ADP-glucose type | chr5:8266934-8270860 FORWARD LENGTH=652)

HSP 1 Score: 67.0106 bits (162), Expect = 4.714e-12
Identity = 28/44 (63.64%), Postives = 33/44 (75.00%), Query Frame = 2 
Query:   56 TYXEXXSSWEGLVKRGMXRDSTWEKAAVXYXQVFXWXFIDPPYV 187
            TY E   SWEGL++RGM R+ +WE AAV Y QVF W F+DPPYV
Sbjct:  608 TYREYKQSWEGLMRRGMTRNYSWENAAVQYEQVFQWVFMDPPYV 651
The following BLAST results are available for this feature:
BLAST of CV090962 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 5
Match NameE-valueIdentityDescription
SSY1_SOLTU1.221e-1256.45Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ARATH3.929e-1163.64Soluble starch synthase, chloroplastic/amyloplasti... [more]
SSY1_ORYSJ3.326e-1060.00Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ORYSI3.326e-1060.00Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_WHEAT7.410e-1055.56Starch synthase 1, chloroplastic/amyloplastic OS=T... [more]
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BLAST of CV090962 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
POPTR_0015s01470.15.678e-1466.67[more]
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BLAST of CV090962 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
ppa002686m3.529e-1368.18[more]
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BLAST of CV090962 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
B9IDQ2|B9IDQ2_POPTR7.521e-1266.67Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B3SRP2|B3SRP2_MANES1.086e-1063.64Starch synthase isoform I OS=Manihot esculenta GN=... [more]
Q8GV54|Q8GV54_COLES4.127e-1059.18Soluble starch synthase I OS=Colocasia esculenta G... [more]
Q0WV88|Q0WV88_ARATH7.039e-1063.64Soluble starch synthase OS=Arabidopsis thaliana GN... [more]
D7M325|D7M325_ARALY7.039e-1063.64Putative uncharacterized protein OS=Arabidopsis ly... [more]
O49064|O49064_MAIZE1.568e-962.22Plastid starch synthase I OS=Zea mays GN=Ss1 PE=2 ... [more]
C0PNE9|C0PNE9_MAIZE1.568e-962.22Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
B3TV98|B3TV98_SORBI1.568e-962.22Soluble starch synthase I (Fragment) OS=Sorghum bi... [more]
D3U2H8|D3U2H8_ORYSA5.959e-960.00Starch synthase OS=Oryza sativa PE=2 SV=1[more]
D0TZM8|D0TZM8_ORYSI5.959e-960.00Soluble starch synthase I OS=Oryza sativa subsp. i... [more]
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BLAST of CV090962 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010385570011.976e-1265.91assembled CDS[more]
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BLAST of CV090962 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G24300.24.714e-1263.64| Symbols: SSI1 | Glycogen/starch synthases, ADP-g... [more]
AT5G24300.14.714e-1263.64| Symbols: SSI1, SSI, ATSS1 | Glycogen/starch synt... [more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 47..53
score
NoneNo IPR availableSEGsegsegcoord: 24..30
score
NoneNo IPR availableSEGsegsegcoord: 1..7
score: NAcoord: 38..47
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CV090962 ID=CV090962; Name=CV090962; organism=Vaccinium corymbosum; type=EST; length=443bp
TTTCTCCTTTATCACNAGCAGAATCTGNTGGCGGCACTGAAGTTTGCAAT
TCATTACTTACANAGAANACAANTCTTCTTGGGAGGGCTTAGTAAAGAGA
GGAATGNACAGAGATTCCACATGGGAGAAGGCTGCGGTTCANTACNAGCA
AGTCTTTGANTGGNNCTTCATCGATCCTCCCTATGTGATTTANCNCGAGA
TNAAGAATANGAGANGAAGAGACCAGCTAAGGATGAGTTTTTCTTAGTAT
CACGCACACAANGAATGTTTTCCCGGCGGGTGAAGTGGGTGATAGNTTTA
TCGATTGNTANCNTANTTCNTNTAGTTTAGGGAGTAATAAGCTTGTTCCA
CAATCTTACCATATTAATATTTGTTCCTGTCTATATGGATCAAAGAGTTT
CAAAGATTGGGGATCACNCTACTAGTCTTACAATCNAGTTTGA
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated