CV091172

EST Overview
NameCV091172
Unique NameCV091172
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length251
Libraries
Library NameType
LIBEST_014531 cDNA non acclimated Bluecrop librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide2011-02-10
Homology
BLAST of CV091172 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0001s13730.1 ()

HSP 1 Score: 38.891 bits (89), Expect = 2.361e-7
Identity = 16/22 (72.73%), Postives = 19/22 (86.36%), Query Frame = -1
Query:   72 IDPNAVAKAFEEHHYSTFDTNR 137
            +DP+ VAKAF EH+YSTFD NR
Sbjct:    1 MDPDQVAKAFVEHYYSTFDANR 22          

HSP 2 Score: 31.5722 bits (70), Expect = 2.361e-7
Identity = 13/22 (59.09%), Postives = 17/22 (77.27%), Query Frame = -2
Query:    5 GLGNSFQDGSKLSFEGQQFHGA 70
            GL N +QDGS L+FEGQ+  G+
Sbjct:   24 GLANLYQDGSMLTFEGQKTQGS 45          
BLAST of CV091172 vs. TAIR peptide
Match: AT1G27310.1 (| Symbols: NTF2A | nuclear transport factor 2A | chr1:9484615-9485790 REVERSE LENGTH=122)

HSP 1 Score: 40.817 bits (94), Expect = 7.425e-7
Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = -1
Query:   72 IDPNAVAKAFEEHHYSTFDTNR 137
            +DP+AVAKAF EH+YSTFD NR
Sbjct:    1 MDPDAVAKAFVEHYYSTFDANR 22          

HSP 2 Score: 27.7202 bits (60), Expect = 7.425e-7
Identity = 11/22 (50.00%), Postives = 17/22 (77.27%), Query Frame = -2
Query:    5 GLGNSFQDGSKLSFEGQQFHGA 70
            GL + +Q+GS L+FEGQ+  G+
Sbjct:   24 GLVSLYQEGSMLTFEGQKIQGS 45          
BLAST of CV091172 vs. TAIR peptide
Match: AT1G27970.2 (| Symbols: NTF2B | nuclear transport factor 2B | chr1:9746921-9748306 FORWARD LENGTH=134)

HSP 1 Score: 42.3578 bits (98), Expect = 9.565e-7
Identity = 17/23 (73.91%), Postives = 22/23 (95.65%), Query Frame = -1
Query:   72 EIDPNAVAKAFEEHHYSTFDTNR 140
            ++DP+AV+KAF EH+YSTFDTNR
Sbjct:    3 QMDPDAVSKAFVEHYYSTFDTNR 25          

HSP 2 Score: 25.7942 bits (55), Expect = 9.565e-7
Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = -2
Query:    8 GLGNSFQDGSKLSFEGQQFHG 70
            GL   +Q+ S L+FEGQ+  G
Sbjct:   27 GLAGLYQEASMLTFEGQKIQG 47          
BLAST of CV091172 vs. TAIR peptide
Match: AT1G27970.1 (| Symbols: NTF2B | nuclear transport factor 2B | chr1:9746921-9747787 FORWARD LENGTH=126)

HSP 1 Score: 42.3578 bits (98), Expect = 9.598e-7
Identity = 17/23 (73.91%), Postives = 22/23 (95.65%), Query Frame = -1
Query:   72 EIDPNAVAKAFEEHHYSTFDTNR 140
            ++DP+AV+KAF EH+YSTFDTNR
Sbjct:    3 QMDPDAVSKAFVEHYYSTFDTNR 25          

HSP 2 Score: 25.7942 bits (55), Expect = 9.598e-7
Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = -2
Query:    8 GLGNSFQDGSKLSFEGQQFHG 70
            GL   +Q+ S L+FEGQ+  G
Sbjct:   27 GLAGLYQEASMLTFEGQKIQG 47          
The following BLAST results are available for this feature:
BLAST of CV091172 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
POPTR_0001s13730.12.361e-772.73[more]
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BLAST of CV091172 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G27310.17.425e-777.27| Symbols: NTF2A | nuclear transport factor 2A | c... [more]
AT1G27970.29.565e-773.91| Symbols: NTF2B | nuclear transport factor 2B | c... [more]
AT1G27970.19.598e-773.91| Symbols: NTF2B | nuclear transport factor 2B | c... [more]
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Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CV091172 ID=CV091172; Name=CV091172; organism=Vaccinium corymbosum; type=EST; length=251bp
GCTAAGCCCCATGAAACTGCTGACCTTCGAAACTCAACTTTGAACCGTCC
TGGAACGAGTTACCTAGCCCGTCTGTTCGTGTCGAATGTCGAGTAGTGGT
GCTCCTCGAATGCTTTGGCCACTGCGTTTGGATCTATTTCTCGCTGCTGC
TACTTCACTGTGAATGAGGGGAGAGATCTTTGGCACCTATTATGCTTTTG
CTTGTTTGAAAAGAAAAGATGGTATCAGTTGAAAAAAGAAAACATATTAC
T
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