HO054802

EST Overview
NameHO054802
Unique NameHO054802
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length119
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Swissprot2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL2011-01-18
Homology
BLAST of HO054802 vs. DB:swissprot:display
Match: LIVF_SALTY (High-affinity branched-chain amino acid transport ATP-binding protein livF OS=Salmonella typhimurium GN=livF PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 8.744e-7
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = -1
Query:    3 YGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITG 119
            YG I+A+  +SL +N GE+VTLIGANGAGKTT L  + G
Sbjct:   15 YGKIQALHDVSLHINQGEIVTLIGANGAGKTTLLGTLCG 53          
BLAST of HO054802 vs. DB:swissprot:display
Match: LIVF_SALTI (High-affinity branched-chain amino acid transport ATP-binding protein livF OS=Salmonella typhi GN=livF PE=3 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 8.744e-7
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = -1
Query:    3 YGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITG 119
            YG I+A+  +SL +N GE+VTLIGANGAGKTT L  + G
Sbjct:   15 YGKIQALHDVSLHINQGEIVTLIGANGAGKTTLLGTLCG 53          
BLAST of HO054802 vs. TrEMBL
Match: B0LFS3|B0LFS3_9BACT (ABC transporter OS=uncultured bacterium pEAF66 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.377e-12
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = -1
Query:    3 YGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITG 119
            YGGIKAVKGI LEVN GELVTLIGANGAGKTTTLKAITG
Sbjct:   15 YGGIKAVKGIDLEVNKGELVTLIGANGAGKTTTLKAITG 53          
BLAST of HO054802 vs. TrEMBL
Match: Q0K7C0|Q0K7C0_RALEH (ABC-type transporter, ATPase component: HAAT family OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=livF2 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.172e-11
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = -1
Query:    3 YGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITG 119
            YGGI+AVKGI LE+ DGELVTLIGANGAGKTTT+KAITG
Sbjct:   15 YGGIQAVKGIDLEIRDGELVTLIGANGAGKTTTMKAITG 53          
BLAST of HO054802 vs. TrEMBL
Match: B3R692|B3R692_CUPTR (High-affinity branched-chain amino acid transport protein, ABC superfamily, atp_binding component OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=livF2 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.172e-11
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = -1
Query:    3 YGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITG 119
            YGGI+AVKGI LE+ DGELVTLIGANGAGKTTT+KAITG
Sbjct:   20 YGGIQAVKGIDLEIRDGELVTLIGANGAGKTTTMKAITG 58          
BLAST of HO054802 vs. TrEMBL
Match: Q46XP7|Q46XP7_RALEJ (ABC transporter related OS=Ralstonia eutropha (strain JMP134) GN=Reut_A2725 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.837e-11
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = -1
Query:    3 YGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITG 119
            YGGI+AVKG+ LE+ DGELVTLIGANGAGKTTT+KAITG
Sbjct:   15 YGGIQAVKGVDLEIKDGELVTLIGANGAGKTTTMKAITG 53          
BLAST of HO054802 vs. TrEMBL
Match: B5SHI8|B5SHI8_RALSO (Amino acid atp-binding protein OS=Ralstonia solanacearum IPO1609 GN=RSIPO_00777 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.837e-11
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = -1
Query:    3 YGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITG 119
            YGGI+AVKG+ LE+ DGELVTLIGANGAGKTTT+KAITG
Sbjct:   15 YGGIQAVKGVDLEITDGELVTLIGANGAGKTTTMKAITG 53          
BLAST of HO054802 vs. TrEMBL
Match: B5RVD3|B5RVD3_RALSO (Amino acid atp-binding protein OS=Ralstonia solanacearum GN=RSMK00968 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.837e-11
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = -1
Query:    3 YGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITG 119
            YGGI+AVKG+ LE+ DGELVTLIGANGAGKTTT+KAITG
Sbjct:   15 YGGIQAVKGVDLEITDGELVTLIGANGAGKTTTMKAITG 53          
BLAST of HO054802 vs. TrEMBL
Match: A3RRR2|A3RRR2_RALSO (LivF OS=Ralstonia solanacearum UW551 GN=livF PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.837e-11
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = -1
Query:    3 YGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITG 119
            YGGI+AVKG+ LE+ DGELVTLIGANGAGKTTT+KAITG
Sbjct:   15 YGGIQAVKGVDLEITDGELVTLIGANGAGKTTTMKAITG 53          
BLAST of HO054802 vs. TrEMBL
Match: Q8XWN6|Q8XWN6_RALSO (Probable amino acid atp-binding abc transporter protein OS=Ralstonia solanacearum GN=RSc2437 PE=4 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.839e-11
Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = -1
Query:    3 YGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITG 119
            YGGI+AVKG+ LE+ DGELVTLIGANGAGKTTT+KAITG
Sbjct:   21 YGGIQAVKGVDLEIADGELVTLIGANGAGKTTTMKAITG 59          
BLAST of HO054802 vs. TrEMBL
Match: Q1LJE0|Q1LJE0_RALME (Leucine/isoleucine/valine transporter subunit, ATP-binding component of ABC superfamily OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=livF2 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.320e-11
Identity = 32/39 (82.05%), Postives = 37/39 (94.87%), Query Frame = -1
Query:    3 YGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITG 119
            YGGI+AVKG+ L++ DGELVTLIGANGAGKTTT+KAITG
Sbjct:   15 YGGIQAVKGVDLDIKDGELVTLIGANGAGKTTTMKAITG 53          
BLAST of HO054802 vs. TrEMBL
Match: A2SEU8|A2SEU8_METPP (Putative amino acid ATP-binding ABC transporter protein OS=Methylibium petroleiphilum (strain PM1) GN=Mpe_A1126 PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.320e-11
Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = -1
Query:    3 YGGIKAVKGISLEVNDGELVTLIGANGAGKTTTLKAITG 119
            YGGI+AVKG+SLEV  GELV+LIGANGAGKTTTLKAITG
Sbjct:   15 YGGIQAVKGVSLEVRQGELVSLIGANGAGKTTTLKAITG 53          
The following BLAST results are available for this feature:
BLAST of HO054802 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
LIVF_SALTY8.744e-761.54High-affinity branched-chain amino acid transport ... [more]
LIVF_SALTI8.744e-761.54High-affinity branched-chain amino acid transport ... [more]
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BLAST of HO054802 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
B0LFS3|B0LFS3_9BACT4.377e-1294.87ABC transporter OS=uncultured bacterium pEAF66 PE=... [more]
Q0K7C0|Q0K7C0_RALEH2.172e-1187.18ABC-type transporter, ATPase component: HAAT famil... [more]
B3R692|B3R692_CUPTR2.172e-1187.18High-affinity branched-chain amino acid transport ... [more]
Q46XP7|Q46XP7_RALEJ2.837e-1184.62ABC transporter related OS=Ralstonia eutropha (str... [more]
B5SHI8|B5SHI8_RALSO2.837e-1184.62Amino acid atp-binding protein OS=Ralstonia solana... [more]
B5RVD3|B5RVD3_RALSO2.837e-1184.62Amino acid atp-binding protein OS=Ralstonia solana... [more]
A3RRR2|A3RRR2_RALSO2.837e-1184.62LivF OS=Ralstonia solanacearum UW551 GN=livF PE=4 ... [more]
Q8XWN6|Q8XWN6_RALSO4.839e-1184.62Probable amino acid atp-binding abc transporter pr... [more]
Q1LJE0|Q1LJE0_RALME6.320e-1182.05Leucine/isoleucine/valine transporter subunit, ATP... [more]
A2SEU8|A2SEU8_METPP6.320e-1187.18Putative amino acid ATP-binding ABC transporter pr... [more]
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Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>HO054802 ID=HO054802; Name=HO054802; organism=Vaccinium corymbosum; type=EST; length=119bp
GTGCCGGTGATGGCTTTCAGGGTGGTGGTCTTGCCGGCGCCATTGGCGCC
GATCAGGGTAACCAGTTCACCGTCGTTGACTTCCAGGCTGATGCCCTTGA
CGGCCTTGATGCCGCCATA
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