CF811116 | GDV

EST Overview


Name	CF811116
Unique Name	CF811116
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	529

Libraries


Library Name	Type
LIBEST_014530 cDNA cold acclimated Bluecrop library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Swissprot	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide	2011-02-10
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of CF811116 vs. DB:swissprot:display
Match: SNRPA_DROME (U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster GN=snf PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.964e-21
Identity = 49/77 (63.64%), Postives = 59/77 (76.62%), Query Frame = -1

Query:  284 PNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 514
            PN ILF+ NLP ET  MML +LF Q+PGFKEVR++  +  IAFVEF  +LQS+ A +ALQGFKITP + M ITFAKK
Sbjct:  140 PNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216

[Close]

BLAST of CF811116 vs. DB:swissprot:display
Match: SNRPA_PIG (U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.967e-20
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = -1

Query:  284 PNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 514
            PN+ILF+ NLP ET  +ML +LF Q+PGFKEVR++  +  IAFVEFD+++Q+  A  ALQGFKIT  N M I+FAKK
Sbjct:  206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282

[Close]

BLAST of CF811116 vs. DB:swissprot:display
Match: SNRPA_MOUSE (U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 1.967e-20
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = -1

Query:  284 PNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 514
            PN+ILF+ NLP ET  +ML +LF Q+PGFKEVR++  +  IAFVEFD+++Q+  A  ALQGFKIT  N M I+FAKK
Sbjct:  211 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 287

[Close]

BLAST of CF811116 vs. DB:swissprot:display
Match: SNRPA_HUMAN (U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 1.967e-20
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = -1

Query:  284 PNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 514
            PN+ILF+ NLP ET  +ML +LF Q+PGFKEVR++  +  IAFVEFD+++Q+  A  ALQGFKIT  N M I+FAKK
Sbjct:  206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282

[Close]

BLAST of CF811116 vs. DB:swissprot:display
Match: SNRPA_BOVIN (U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.967e-20
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = -1

Query:  284 PNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 514
            PN+ILF+ NLP ET  +ML +LF Q+PGFKEVR++  +  IAFVEFD+++Q+  A  ALQGFKIT  N M I+FAKK
Sbjct:  206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282

[Close]

BLAST of CF811116 vs. DB:swissprot:display
Match: RU2B_MOUSE (U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.967e-20
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = -1

Query:  284 PNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 514
            PN ILF+ NLP ET  MML +LF Q+PGFKEVR++  +  IAFVEF++D Q+  A  ALQGFKITP + M IT+AKK
Sbjct:  149 PNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225

[Close]

BLAST of CF811116 vs. DB:swissprot:display
Match: RU2B_HUMAN (U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.967e-20
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = -1

Query:  284 PNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 514
            PN ILF+ NLP ET  MML +LF Q+PGFKEVR++  +  IAFVEF++D Q+  A  ALQGFKITP + M IT+AKK
Sbjct:  149 PNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225

[Close]

BLAST of CF811116 vs. DB:swissprot:display
Match: SNRPA_XENLA (U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.569e-20
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = -1

Query:  284 PNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 514
            PN+ILF+ NLP ET  +ML +LF Q+PGFKEVR++  +  IAFVEFD+++Q+  A ++LQGFKIT  N M I+FAKK
Sbjct:  206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282

[Close]

BLAST of CF811116 vs. DB:swissprot:display
Match: RU2B_DICDI (U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum GN=snrpb2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.841e-19
Identity = 41/75 (54.67%), Postives = 58/75 (77.33%), Query Frame = -1

Query:  290 PNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFA 514
            PN  LF++NLP +  +MML +LF Q+ GFKEV M+E+K GIAF+EF+D+++S  AM  LQ FK+TP+ PM ++FA
Sbjct:  165 PNKTLFVENLPDKCDSMMLSMLFSQFQGFKEVHMVESKKGIAFIEFEDEIKSGFAMTNLQHFKVTPEKPMVVSFA 239

[Close]

BLAST of CF811116 vs. DB:swissprot:display
Match: RU1A_SCHPO (U1 small nuclear ribonucleoprotein usp102 OS=Schizosaccharomyces pombe GN=usp102 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.669e-11
Identity = 32/82 (39.02%), Postives = 51/82 (62.20%), Query Frame = -1

Query:  284 EXXAAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 529
            E    PN +L +QN+P E    +L  +F+ + GF+EVRM+  + GIAFVE+D D +++VA     G  ++  N + +TFA+K
Sbjct:  167 EDLLPPNKVLLLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSLS-GNQIKVTFARK 247

[Close]

BLAST of CF811116 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0013s14980.2 ()

HSP 1 Score: 147.517 bits (371), Expect = 4.580e-36
Identity = 70/79 (88.61%), Postives = 78/79 (98.73%), Query Frame = -1

Query:  284 AAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 520
            A PNNILFIQNLP+ETT+MMLQVLFQQYPGF+EVRMIEAKPGIAFVEF+DD+QSS+AMQALQGFKITPQNPMA+T+AKK
Sbjct:  148 APPNNILFIQNLPHETTSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAVTYAKK 226

[Close]

BLAST of CF811116 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0013s14980.1 ()

HSP 1 Score: 147.517 bits (371), Expect = 4.580e-36
Identity = 70/79 (88.61%), Postives = 78/79 (98.73%), Query Frame = -1

Query:  284 AAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 520
            A PNNILFIQNLP+ETT+MMLQVLFQQYPGF+EVRMIEAKPGIAFVEF+DD+QSS+AMQALQGFKITPQNPMA+T+AKK
Sbjct:  155 APPNNILFIQNLPHETTSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAVTYAKK 233

[Close]

BLAST of CF811116 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0019s14440.1 ()

HSP 1 Score: 146.747 bits (369), Expect = 7.813e-36
Identity = 70/77 (90.91%), Postives = 77/77 (100.00%), Query Frame = -1

Query:  284 PNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 514
            PNNILFIQNLP+ETT+MMLQVLFQQYPGF+EVRMIEAKPGIAFVEF+DD+QSS+AMQALQGFKITPQNPMAIT+AKK
Sbjct:  199 PNNILFIQNLPHETTSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITYAKK 275

[Close]

BLAST of CF811116 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0014s12260.1 ()

HSP 1 Score: 126.331 bits (316), Expect = 1.093e-29
Identity = 62/82 (75.61%), Postives = 69/82 (84.15%), Query Frame = -1

Query:  284 EXXAAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 529
            E  A PNNILFIQNLP ETT MMLQ+LFQQYPGFKEVRM+EAKPGIAFVE+ D++QS+ AM  LQGFKI  QN M IT+AKK
Sbjct:  173 EAPAPPNNILFIQNLPNETTPMMLQMLFQQYPGFKEVRMVEAKPGIAFVEYGDEMQSTGAMHGLQGFKILQQNSMLITYAKK 254

[Close]

BLAST of CF811116 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0363s00200.1 ()

HSP 1 Score: 123.25 bits (308), Expect = 9.250e-29
Identity = 62/82 (75.61%), Postives = 70/82 (85.37%), Query Frame = -1

Query:  284 EXXAAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 529
            E  A PNNILFIQNLP ETTTMMLQ+LFQQY GFKEVRM+E KPGIAFVE+ D++QS+VAM ALQGFK+  QN M IT+AKK
Sbjct:   45 EAPAPPNNILFIQNLPNETTTMMLQMLFQQYAGFKEVRMVETKPGIAFVEYGDEMQSTVAMHALQGFKL-QQNSMLITYAKK 125

[Close]

BLAST of CF811116 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0002s20490.1 ()

HSP 1 Score: 123.25 bits (308), Expect = 9.250e-29
Identity = 62/82 (75.61%), Postives = 70/82 (85.37%), Query Frame = -1

Query:  284 EXXAAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 529
            E  A PNNILFIQNLP ETTTMMLQ+LFQQY GFKEVRM+E KPGIAFVE+ D++QS+VAM ALQGFK+  QN M IT+AKK
Sbjct:  160 EAPAPPNNILFIQNLPNETTTMMLQMLFQQYAGFKEVRMVETKPGIAFVEYGDEMQSTVAMHALQGFKL-QQNSMLITYAKK 240

[Close]

BLAST of CF811116 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s24130.1 ()

HSP 1 Score: 50.447 bits (119), Expect = 7.620e-7
Identity = 31/87 (35.63%), Postives = 50/87 (57.47%), Query Frame = -1

Query:  287 NNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMI--EAKPG------IAFVEFDDDLQSSVAMQALQGFKITPQNP----MAITFAK 511
            +NILF+  LP + T   +  LF+ + G+KE+R++  EA+        + FVEF D   ++ AM+ALQG+K   + P    + I FA+
Sbjct:  173 SNILFVDGLPTDCTRREVGHLFRPFIGYKEIRVVHKEARKSGDRATVLCFVEFTDANCAATAMEALQGYKFDDKKPDSPTLKIQFAR 259

[Close]

BLAST of CF811116 vs. P. persica 1.0 peptide
Match: ppa010876m ()

HSP 1 Score: 130.954 bits (328), Expect = 3.156e-31
Identity = 61/79 (77.22%), Postives = 75/79 (94.94%), Query Frame = -1

Query:  284 AAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 520
            AAPN+ILFI+NLP+ETT+ ML++LF+QYPGF+EVR+IEAKPGIAFVEF+DD+ SS+AM ALQGF+ITPQN MAI+FAKK
Sbjct:  154 AAPNSILFIENLPHETTSAMLELLFKQYPGFREVRLIEAKPGIAFVEFEDDIHSSMAMTALQGFRITPQNSMAISFAKK 232

[Close]

BLAST of CF811116 vs. P. persica 1.0 peptide
Match: ppa010847m ()

HSP 1 Score: 130.954 bits (328), Expect = 3.156e-31
Identity = 61/79 (77.22%), Postives = 75/79 (94.94%), Query Frame = -1

Query:  284 AAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 520
            AAPN+ILFI+NLP+ETT+ ML++LF+QYPGF+EVR+IEAKPGIAFVEF+DD+ SS+AM ALQGF+ITPQN MAI+FAKK
Sbjct:  155 AAPNSILFIENLPHETTSAMLELLFKQYPGFREVRLIEAKPGIAFVEFEDDIHSSMAMTALQGFRITPQNSMAISFAKK 233

[Close]

BLAST of CF811116 vs. P. persica 1.0 peptide
Match: ppa000711m ()

HSP 1 Score: 70.0922 bits (170), Expect = 6.533e-13
Identity = 39/64 (60.94%), Postives = 46/64 (71.88%), Query Frame = 3

Query:  288 LAKVIAMGF*GVILKP*RACMATEDCRSSSNSTKAMPGFASIIRTSLKPGYCWKST*SIIVVVS 479
            + +VI + F GVILKP  AC+AT DC SS NSTKA+PGF S I TSLKP Y  KS  +I+ VVS
Sbjct:  963 ILEVINIEFCGVILKPWSACIATVDCISSPNSTKAIPGFVSTILTSLKPAYWQKSICNIMGVVS 1026

[Close]

BLAST of CF811116 vs. TrEMBL
Match: Q41499|Q41499_SOLTU (Spliceosomal protein OS=Solanum tuberosum GN=U2B PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.610e-34
Identity = 71/79 (89.87%), Postives = 78/79 (98.73%), Query Frame = -1

Query:  284 AAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 520
            A PNNILFIQNLP+ETT+MML+VLF+QYPGF+EVRMIEAKPGIAFVEFDDD+QSSVAMQALQGFKITPQNPMAIT+AKK
Sbjct:  153 AEPNNILFIQNLPHETTSMMLEVLFKQYPGFREVRMIEAKPGIAFVEFDDDVQSSVAMQALQGFKITPQNPMAITYAKK 231

[Close]

BLAST of CF811116 vs. TrEMBL
Match: D7SJN7|D7SJN7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_4.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00024622001 PE=4 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.043e-34
Identity = 70/82 (85.37%), Postives = 79/82 (96.34%), Query Frame = -1

Query:  284 EXXAAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 529
            E  AAPNNILFIQNLP++TT+MMLQVLFQQYPGF+EVRMIEAKPGIAFVEF+DD+QSS+AM+ALQGFKITPQNPMAI +AKK
Sbjct:  153 EPEAAPNNILFIQNLPHQTTSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYAKK 234

[Close]

BLAST of CF811116 vs. TrEMBL
Match: B9INS5|B9INS5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_836161 PE=4 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.043e-34
Identity = 70/77 (90.91%), Postives = 77/77 (100.00%), Query Frame = -1

Query:  284 PNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 514
            PNNILFIQNLP+ETT+MMLQVLFQQYPGF+EVRMIEAKPGIAFVEF+DD+QSS+AMQALQGFKITPQNPMAIT+AKK
Sbjct:  157 PNNILFIQNLPHETTSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITYAKK 233

[Close]

BLAST of CF811116 vs. TrEMBL
Match: B9RVH3|B9RVH3_RICCO (Small nuclear ribonucleoprotein U1a,U2b, putative OS=Ricinus communis GN=RCOM_1135960 PE=4 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.792e-33
Identity = 70/79 (88.61%), Postives = 77/79 (97.47%), Query Frame = -1

Query:  284 AAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 520
            A PNNILFIQNLP+ETT+MMLQVLFQQYPGF+EVRMIEAKPGIAFVEF+DD+QSS+AMQALQ FKITPQNPMAIT+AKK
Sbjct:  155 APPNNILFIQNLPHETTSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQSFKITPQNPMAITYAKK 233

[Close]

BLAST of CF811116 vs. TrEMBL
Match: A9NND3|A9NND3_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.340e-33
Identity = 70/82 (85.37%), Postives = 77/82 (93.90%), Query Frame = -1

Query:  284 EXXAAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 529
            E  A PNNILFIQNLP+ETTTMMLQ+LFQQYPGFKEVRMIEAKPGIAFVE+ D++Q+SVAMQALQGFKITPQNPM IT+AKK
Sbjct:  154 EPPAPPNNILFIQNLPHETTTMMLQMLFQQYPGFKEVRMIEAKPGIAFVEYGDEMQASVAMQALQGFKITPQNPMLITYAKK 235

[Close]

BLAST of CF811116 vs. TrEMBL
Match: C5WNF2|C5WNF2_SORBI (Putative uncharacterized protein Sb01g038060 OS=Sorghum bicolor GN=Sb01g038060 PE=4 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.413e-32
Identity = 68/82 (82.93%), Postives = 76/82 (92.68%), Query Frame = -1

Query:  284 EXXAAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 529
            E  A PNNILFIQNLP +TT+MMLQ+LFQQYPGF+EVRMIEAKPGIAFVEF+DD QS VAMQALQGFKITP+NPMAI++AKK
Sbjct:  152 EPPAPPNNILFIQNLPDQTTSMMLQILFQQYPGFREVRMIEAKPGIAFVEFEDDSQSMVAMQALQGFKITPENPMAISYAKK 233

[Close]

BLAST of CF811116 vs. TrEMBL
Match: Q10MR1|Q10MR1_ORYSJ (RNA recognition motif family protein, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os03g18720 PE=4 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.528e-32
Identity = 68/82 (82.93%), Postives = 75/82 (91.46%), Query Frame = -1

Query:  284 EXXAAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 529
            E  A PNNILFIQNLP ETT+MMLQ+LFQQYPGF+EVRMIEAKPGIAFVE++DD QS VAMQALQGFKITP NPMAI++AKK
Sbjct:  150 EPPAPPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 231

[Close]

BLAST of CF811116 vs. TrEMBL
Match: Q10MR0|Q10MR0_ORYSJ (Os03g0298800 protein OS=Oryza sativa subsp. japonica GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.528e-32
Identity = 68/82 (82.93%), Postives = 75/82 (91.46%), Query Frame = -1

Query:  284 EXXAAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 529
            E  A PNNILFIQNLP ETT+MMLQ+LFQQYPGF+EVRMIEAKPGIAFVE++DD QS VAMQALQGFKITP NPMAI++AKK
Sbjct:  151 EPPAPPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of CF811116 vs. TrEMBL
Match: C0PEG8|C0PEG8_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.528e-32
Identity = 68/82 (82.93%), Postives = 76/82 (92.68%), Query Frame = -1

Query:  284 EXXAAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 529
            E  A PNNILFIQNLP +TT+MMLQ+LFQQYPGF+EVRMIEAKPGIAFVEF+DD QS VAMQALQGFKITP+NPMAI++AKK
Sbjct:  152 EPPAPPNNILFIQNLPDQTTSMMLQILFQQYPGFREVRMIEAKPGIAFVEFEDDGQSMVAMQALQGFKITPENPMAISYAKK 233

[Close]

BLAST of CF811116 vs. TrEMBL
Match: B8AM21|B8AM21_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_11177 PE=4 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.528e-32
Identity = 68/82 (82.93%), Postives = 75/82 (91.46%), Query Frame = -1

Query:  284 EXXAAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 529
            E  A PNNILFIQNLP ETT+MMLQ+LFQQYPGF+EVRMIEAKPGIAFVE++DD QS VAMQALQGFKITP NPMAI++AKK
Sbjct:  151 EPPAPPNNILFIQNLPAETTSMMLQILFQQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232

[Close]

BLAST of CF811116 vs. Vitis vinifera peptide
Match: GSVIVT01024622001 (assembled CDS)

HSP 1 Score: 146.747 bits (369), Expect = 4.771e-36
Identity = 70/82 (85.37%), Postives = 79/82 (96.34%), Query Frame = -1

Query:  284 EXXAAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 529
            E  AAPNNILFIQNLP++TT+MMLQVLFQQYPGF+EVRMIEAKPGIAFVEF+DD+QSS+AM+ALQGFKITPQNPMAI +AKK
Sbjct:  153 EPEAAPNNILFIQNLPHQTTSMMLQVLFQQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYAKK 234

[Close]

BLAST of CF811116 vs. Vitis vinifera peptide
Match: GSVIVT01028031001 (assembled CDS)

HSP 1 Score: 127.102 bits (318), Expect = 3.912e-30
Identity = 61/82 (74.39%), Postives = 69/82 (84.15%), Query Frame = -1

Query:  284 EXXAAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 529
            E  A PNNILFIQNLP+E T MMLQ+ F QYPGFKEVRM+EAKPGIAFVE+ D++QS+VAMQ LQG KI  QNPM IT+AKK
Sbjct:  151 EAPAPPNNILFIQNLPHEATPMMLQMFFCQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQGLQGLKINQQNPMLITYAKK 232

[Close]

BLAST of CF811116 vs. Vitis vinifera peptide
Match: GSVIVT01035417001 (assembled CDS)

HSP 1 Score: 53.9138 bits (128), Expect = 4.209e-8
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = -1

Query:  308 NNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPG--------IAFVEFDDDLQSSVAMQALQGFKITPQNP 511
            +NILF+  LP + T   +  LF+ + GFKE+R++  +P         + FVEF+D   S  A++ALQG+K   + P
Sbjct:  138 SNILFVDGLPKDCTRREVGHLFRPFIGFKEIRVVHKEPRHSGDKAMVLCFVEFNDASCSRTALEALQGYKFDDKKP 213

[Close]

BLAST of CF811116 vs. TAIR peptide
Match: AT2G30260.1 (| Symbols: U2B'' | U2 small nuclear ribonucleoprotein B | chr2:12905557-12907434 REVERSE LENGTH=232)

HSP 1 Score: 138.658 bits (348), Expect = 1.849e-33
Identity = 63/77 (81.82%), Postives = 75/77 (97.40%), Query Frame = -1

Query:  284 PNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 514
            PNNILFIQNLP+ETT+MMLQ+LF+QYPGFKE+RMI+AKPGIAFVE++DD+Q+S+AMQ LQGFKITPQNPM I+FAKK
Sbjct:  156 PNNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of CF811116 vs. TAIR peptide
Match: AT1G06960.3 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2135982-2137533 FORWARD LENGTH=200)

HSP 1 Score: 136.732 bits (343), Expect = 7.027e-33
Identity = 63/77 (81.82%), Postives = 73/77 (94.81%), Query Frame = -1

Query:  284 PNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 514
            PNNILFI NLP ET +MMLQ+LF+QYPGFKE+RMIEAKPGIAFVE++DD+QSS+AMQALQGFKITPQNPM ++FAKK
Sbjct:  124 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 200

[Close]

BLAST of CF811116 vs. TAIR peptide
Match: AT1G06960.2 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2135930-2137533 FORWARD LENGTH=228)

HSP 1 Score: 136.732 bits (343), Expect = 7.027e-33
Identity = 63/77 (81.82%), Postives = 73/77 (94.81%), Query Frame = -1

Query:  284 PNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 514
            PNNILFI NLP ET +MMLQ+LF+QYPGFKE+RMIEAKPGIAFVE++DD+QSS+AMQALQGFKITPQNPM ++FAKK
Sbjct:  152 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228

[Close]

BLAST of CF811116 vs. TAIR peptide
Match: AT1G06960.1 (| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:2135930-2137533 FORWARD LENGTH=229)

HSP 1 Score: 136.732 bits (343), Expect = 7.027e-33
Identity = 63/77 (81.82%), Postives = 73/77 (94.81%), Query Frame = -1

Query:  284 PNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 514
            PNNILFI NLP ET +MMLQ+LF+QYPGFKE+RMIEAKPGIAFVE++DD+QSS+AMQALQGFKITPQNPM ++FAKK
Sbjct:  153 PNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of CF811116 vs. TAIR peptide
Match: AT2G47580.1 (| Symbols: U1A | spliceosomal protein U1A | chr2:19517229-19518686 FORWARD LENGTH=250)

HSP 1 Score: 121.324 bits (303), Expect = 3.055e-28
Identity = 62/82 (75.61%), Postives = 70/82 (85.37%), Query Frame = -1

Query:  284 EXXAAPNNILFIQNLPYETTTMMLQVLFQQYPGFKEVRMIEAKPGIAFVEFDDDLQSSVAMQALQGFKITPQNPMAITFAKK 529
            E  A PNNILF+QNLP+ETT M+LQ+LF QY GFKEVRMIEAKPGIAFVEF D++QS+VAMQ LQGFKI  QN M IT+AKK
Sbjct:  170 EAPAPPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKI-QQNQMLITYAKK 250

The following BLAST results are available for this feature:

BLAST of CF811116 vs. DB:swissprot:display
BLAST of CF811116 vs. Populus trichocarpa peptide v2.0
BLAST of CF811116 vs. P. persica 1.0 peptide
BLAST of CF811116 vs. TrEMBL
BLAST of CF811116 vs. Vitis vinifera peptide
BLAST of CF811116 vs. TAIR peptide

BLAST of CF811116 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
SNRPA_DROME	3.964e-21	63.64	U1 small nuclear ribonucleoprotein A OS=Drosophila...	[more]
SNRPA_PIG	1.967e-20	59.74	U1 small nuclear ribonucleoprotein A OS=Sus scrofa...	[more]
SNRPA_MOUSE	1.967e-20	59.74	U1 small nuclear ribonucleoprotein A OS=Mus muscul...	[more]
SNRPA_HUMAN	1.967e-20	59.74	U1 small nuclear ribonucleoprotein A OS=Homo sapie...	[more]
SNRPA_BOVIN	1.967e-20	59.74	U1 small nuclear ribonucleoprotein A OS=Bos taurus...	[more]
RU2B_MOUSE	1.967e-20	61.04	U2 small nuclear ribonucleoprotein B'' OS=Mus musc...	[more]
RU2B_HUMAN	1.967e-20	61.04	U2 small nuclear ribonucleoprotein B'' OS=Homo sap...	[more]
SNRPA_XENLA	2.569e-20	58.44	U1 small nuclear ribonucleoprotein A OS=Xenopus la...	[more]
RU2B_DICDI	2.841e-19	54.67	U2 small nuclear ribonucleoprotein B'' OS=Dictyost...	[more]
RU1A_SCHPO	1.669e-11	39.02	U1 small nuclear ribonucleoprotein usp102 OS=Schiz...	[more]

BLAST of CF811116 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 7


Match Name	E-value	Identity
POPTR_0013s14980.2	4.580e-36	88.61	[more]
POPTR_0013s14980.1	4.580e-36	88.61	[more]
POPTR_0019s14440.1	7.813e-36	90.91	[more]
POPTR_0014s12260.1	1.093e-29	75.61	[more]
POPTR_0363s00200.1	9.250e-29	75.61	[more]
POPTR_0002s20490.1	9.250e-29	75.61	[more]
POPTR_0006s24130.1	7.620e-7	35.63	[more]

BLAST of CF811116 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 3


Match Name	E-value	Identity
ppa010876m	3.156e-31	77.22	[more]
ppa010847m	3.156e-31	77.22	[more]
ppa000711m	6.533e-13	60.94	[more]

BLAST of CF811116 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
Q41499\|Q41499_SOLTU	3.610e-34	89.87	Spliceosomal protein OS=Solanum tuberosum GN=U2B P...	[more]
D7SJN7\|D7SJN7_VITVI	8.043e-34	85.37	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9INS5\|B9INS5_POPTR	8.043e-34	90.91	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9RVH3\|B9RVH3_RICCO	1.792e-33	88.61	Small nuclear ribonucleoprotein U1a,U2b, putative ...	[more]
A9NND3\|A9NND3_PICSI	2.340e-33	85.37	Putative uncharacterized protein OS=Picea sitchens...	[more]
C5WNF2\|C5WNF2_SORBI	4.413e-32	82.93	Putative uncharacterized protein Sb01g038060 OS=So...	[more]
Q10MR1\|Q10MR1_ORYSJ	7.528e-32	82.93	RNA recognition motif family protein, expressed OS...	[more]
Q10MR0\|Q10MR0_ORYSJ	7.528e-32	82.93	Os03g0298800 protein OS=Oryza sativa subsp. japoni...	[more]
C0PEG8\|C0PEG8_MAIZE	7.528e-32	82.93	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
B8AM21\|B8AM21_ORYSI	7.528e-32	82.93	Putative uncharacterized protein OS=Oryza sativa s...	[more]

BLAST of CF811116 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 3


Match Name	E-value	Identity	Description
GSVIVT01024622001	4.771e-36	85.37	assembled CDS	[more]
GSVIVT01028031001	3.912e-30	74.39	assembled CDS	[more]
GSVIVT01035417001	4.209e-8	36.84	assembled CDS	[more]

BLAST of CF811116 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 5


Match Name	E-value	Identity	Description
AT2G30260.1	1.849e-33	81.82	\| Symbols: U2B'' \| U2 small nuclear ribonucleoprot...	[more]
AT1G06960.3	7.027e-33	81.82	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT1G06960.2	7.027e-33	81.82	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT1G06960.1	7.027e-33	81.82	\| Symbols: \| RNA-binding (RRM/RBD/RNP motifs) fam...	[more]
AT2G47580.1	3.055e-28	75.61	\| Symbols: U1A \| spliceosomal protein U1A \| chr2:1...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 10..69 score: 1.1
IPR000504	RNA recognition motif domain	SMART	SM00360	no description	coord: 9..78 score: 4.2
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 8..82 score: 13
IPR012677	Nucleotide-binding, alpha-beta plait	GENE3D	3.30.70.330	no description	coord: 4..81 score: 4.5
None	No IPR available	PANTHER	PTHR10501	SMALL NUCLEAR RIBONUCLEOPROTEIN U1A,U2B	coord: 6..82 score: 3
None	No IPR available	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 6..82 score: 3.7

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF811116 ID=CF811116; Name=CF811116; organism=Vaccinium corymbosum; type=EST; length=529bp
GACATACAAAGTCCATACATGTTAATTTTATTTTACTCCCAACAGAATTC
GTCCATGAAAGATTGCAATCACTTGGGGATCAAACCTTTGAACACAAAGA
ACAAGGCGAGTAAGAAACAAATTTTGACTGATCAATGCAAAACAGAAAAC
TAGAAAACCGCAATAAGAAGACTGTCAAACGTAGCATTGACATGATCAAA
TTCCTCACCTGGCCATGGCCATGGAAACAAGTATTTTATCTTCCAAAATG
CAAACAATACTCACAAGATGCTTACCATGGTTACTTCTTGGCAAAGGTAA
TAGCCATGGGATTCTGAGGTGTGATTTTGAAGCCCTGAAGGGCCTGCATG
GCAACCGAGGACTGCAGATCATCGTCAAACTCTACAAAGGCGATGCCTGG
TTTTGCTTCGATCATTCGAACTTCCTTGAAACCAGGGTATTGTTGGAAGA
GCACTTGAAGCATCATAGTTGTCGTCTCGTACGGTAAATTCTGTATAAAA
AGTATGTTGTTTGGGGCTGCANCANCTTC

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding
GO:0000166	nucleotide binding

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
noIPR	unintegrated