CF811210

EST Overview
NameCF811210
Unique NameCF811210
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length553
Libraries
Library NameType
LIBEST_014531 cDNA non acclimated Bluecrop librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Homology
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BLAST of CF811210 vs. DB:swissprot:display
Match: AB1I_ARATH (ABC transporter I family member 1 OS=Arabidopsis thaliana GN=ABCI1 PE=2 SV=1)

HSP 1 Score: 44.2838 bits (103), Expect = 1.326e-7
Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = 2 
Query:  479 GALVLMGTNGSGKSTFLXMLAGFXR 553
            GALVL GTNGSGKSTFL MLAGF +
Sbjct:   37 GALVLTGTNGSGKSTFLRMLAGFSK 61

HSP 2 Score: 31.5722 bits (70), Expect = 1.326e-7
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 3 
Query:  411 NVSCMRNTQQILRH 452
            NVSCMRN QQILRH
Sbjct:   15 NVSCMRNAQQILRH 28
[Close]
BLAST of CF811210 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0018s11870.1 ()

HSP 1 Score: 42.743 bits (99), Expect = 3.490e-8
Identity = 20/25 (80.00%), Postives = 22/25 (88.00%), Query Frame = 2 
Query:  479 GALVLMGTNGSGKSTFLXMLAGFXR 553
            GALVL G+NGSGKSTFL MLAGF +
Sbjct:   37 GALVLTGSNGSGKSTFLRMLAGFSK 61

HSP 2 Score: 31.9574 bits (71), Expect = 3.490e-8
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3 
Query:  408 NNVSCMRNTQQILRH 452
            +NVSCMRN QQILRH
Sbjct:   14 DNVSCMRNAQQILRH 28
[Close]
BLAST of CF811210 vs. P. persica 1.0 peptide
Match: ppa010974m ()

HSP 1 Score: 46.595 bits (109), Expect = 1.851e-9
Identity = 22/25 (88.00%), Postives = 23/25 (92.00%), Query Frame = 2 
Query:  479 GALVLMGTNGSGKSTFLXMLAGFXR 553
            GALVLMGTNGSGK+TFL MLAGF R
Sbjct:   37 GALVLMGTNGSGKTTFLRMLAGFSR 61

HSP 2 Score: 31.9574 bits (71), Expect = 1.851e-9
Identity = 13/15 (86.67%), Postives = 14/15 (93.33%), Query Frame = 3 
Query:  408 NNVSCMRNTQQILRH 452
            +NVSCMRN QQILRH
Sbjct:   14 DNVSCMRNAQQILRH 28
[Close]
BLAST of CF811210 vs. TAIR peptide
Match: AT1G63270.1 (| Symbols: ATNAP10, NAP10 | non-intrinsic ABC protein 10 | chr1:23469664-23470353 REVERSE LENGTH=229)

HSP 1 Score: 44.2838 bits (103), Expect = 1.414e-8
Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = 2 
Query:  479 GALVLMGTNGSGKSTFLXMLAGFXR 553
            GALVL GTNGSGKSTFL MLAGF +
Sbjct:   37 GALVLTGTNGSGKSTFLRMLAGFSK 61

HSP 2 Score: 31.5722 bits (70), Expect = 1.414e-8
Identity = 13/14 (92.86%), Postives = 13/14 (92.86%), Query Frame = 3 
Query:  411 NVSCMRNTQQILRH 452
            NVSCMRN QQILRH
Sbjct:   15 NVSCMRNAQQILRH 28
The following BLAST results are available for this feature:
BLAST of CF811210 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
AB1I_ARATH1.326e-784.00ABC transporter I family member 1 OS=Arabidopsis t... [more]
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BLAST of CF811210 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
POPTR_0018s11870.13.490e-880.00[more]
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BLAST of CF811210 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
ppa010974m1.851e-988.00[more]
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BLAST of CF811210 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G63270.11.414e-884.00| Symbols: ATNAP10, NAP10 | non-intrinsic ABC prot... [more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 1..16
score
NoneNo IPR availableGENE3D3.40.50.300no descriptioncoord: 35..56
score: 0.0
NoneNo IPR availablePANTHERPTHR19222ATP BINDING CASSETE (ABC) TRANSPORTERcoord: 33..57
score: 2
NoneNo IPR availableSEGsegsegcoord: 31..41
score
NoneNo IPR availableSEGsegsegcoord: 56..65
score
NoneNo IPR availableSEGsegsegcoord: 14..26
score
IPR005895ABC transporter, haem export, CcmAPANTHERPTHR19222:SF5HEME EXPORTER PROTEIN Acoord: 33..57
score: 2

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CF811210 ID=CF811210; Name=CF811210; organism=Vaccinium corymbosum; type=EST; length=553bp
GAAGTTCGAACACACTGGTTTAGAGAGAGAAGAGAGGTGAGAGACCAGAG
ATGGGGGCATCCTTAACGAAGGTTCGTGTATCGTCGTCGAAGATTTCTTG
TTCGAAATCAAAGACCCGTAATTTGTGGAATAGCTTGTAGATCTAAAGCC
TTCGTCCTTTATTGTCGTCGTTTGCTGGAGTTCATTCATCACGAGCTCAA
TACTGCAGCTGTTGAATCAAATCAGACTCTCTCCTCTTTGTTTTTTGATC
TGCAAAGCAAATCAGACTGGGTGTTGACTGTTAGCTTCCCGAAACTGTGT
TGGACTCCAAACATTTGATTTTTTTGGCAGACTCAAATTTGACCATTGTA
ACCCATTTACAATCTAATATGTCTCTTCGTAGACCACCACTCCCCCGTCT
CCTCCTCAACAACGTCTCATGCATGAGAAACACCCAACAAATCTTACGCC
ACGNTCAATGTCTCCCTTCACGATGGTGGGTGCCCTGGTGCTAATGGGCA
CCAACGGCTCAGGGAAATCCACTTTCTTGNGCATGTTAGCCGGATTCNAC
AGG
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0017004cytochrome complex assembly
Vocabulary: Cellular Component
TermDefinition
GO:0030288outer membrane-bounded periplasmic space
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated
IPR005895ABC_transptr_haem_export_CcmA