CF811290 | GDV

EST Overview


Name	CF811290
Unique Name	CF811290
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	662

Libraries


Library Name	Type
LIBEST_014531 cDNA non acclimated Bluecrop library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of CF811290 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s11080.1 ()

HSP 1 Score: 50.8322 bits (120), Expect = 5.595e-10
Identity = 35/115 (30.43%), Postives = 57/115 (49.57%), Query Frame = 2

Query:   83 QVMELEESRNSLLQENLRLTEIVSGMQSQIQSLEKSIVSSCAVPVATMNDSGSEDVNSQMEAASQXXXXXXXXXXXXXXXXXXXXXXXDLQGVTAEPSPAVGSVSEFRETTVAPG 427
            QV+ELE+SRNSL++EN +L E +S ++ Q+Q+++ S+  +    +  +  +  E++NSQ+EAA                         D QG  A  S A G     R + +A G
Sbjct:  267 QVVELEDSRNSLVKENQQLKESISDLKLQLQNIDTSVSFANTSELGKLG-AEKEELNSQIEAACALVDKLITENADLVEKVNELYIKLDHQGTAASFSSATGRGVIVRNSELANG 380

HSP 2 Score: 30.4166 bits (67), Expect = 5.595e-10
Identity = 13/25 (52.00%), Postives = 19/25 (76.00%), Query Frame = 3

Query:    3 WIQKENSMEDTIARLNGDNTRLQIQ 77
            W   EN+ ++TIAR+N D TRL++Q
Sbjct:  243 WTISENTTKETIARMNIDVTRLRMQ 267

[Close]

BLAST of CF811290 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0016s14590.1 ()

HSP 1 Score: 56.225 bits (134), Expect = 9.421e-10
Identity = 40/116 (34.48%), Postives = 57/116 (49.14%), Query Frame = 2

Query:   83 QVMELEESRNSLLQENLRLTEIVSGMQSQIQSLE-KSIVSSCAVPVATMNDSGSEDVNSQMEAASQXXXXXXXXXXXXXXXXXXXXXXXDLQGVTAEPSPAVGSVSEFRETTVAPG 427
            QV+ELE SRNSL++EN +L E VS ++ Q+Q++E +  +SS        ND+  ED+NSQ+EAA                         D Q   A  S + GS    R + +A G
Sbjct:  245 QVVELEYSRNSLVKENQQLKESVSDLKLQLQNVETQQSISSANTSELGKNDAEKEDLNSQIEAACALVDKLITENAELVEKVNELYIKLDQQKAAASLSSSAGSDVILRNSELANG 360

HSP 2 Score: 24.2534 bits (51), Expect = 9.421e-10
Identity = 9/25 (36.00%), Postives = 16/25 (64.00%), Query Frame = 3

Query:    3 WIQKENSMEDTIARLNGDNTRLQIQ 77
            W   EN+ ++ + R+N D T L++Q
Sbjct:  221 WAVSENTTKEIVGRMNIDITSLRMQ 245

[Close]

BLAST of CF811290 vs. TrEMBL
Match: B9SRR6|B9SRR6_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1059350 PE=4 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 2.392e-9
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 2

Query:   83 QVMELEESRNSLLQENLRLTEIVSGMQSQIQSLEKSIVSSCAVPVATMNDSGSEDVNSQMEAA 271
            QV+ELEESRNSLL+EN +L E +S +Q Q+Q+LE +I S+        +    ED+ SQ+EAA
Sbjct:  283 QVVELEESRNSLLKENQQLMENISDLQLQVQNLETNISSASTSCEQKKHALEGEDLESQIEAA 345

HSP 2 Score: 30.8018 bits (68), Expect = 2.392e-9
Identity = 13/25 (52.00%), Postives = 19/25 (76.00%), Query Frame = 3

Query:    3 WIQKENSMEDTIARLNGDNTRLQIQ 77
            W   EN+ ++TIAR+N D TRL++Q
Sbjct:  259 WTLAENTTKETIARMNVDVTRLRMQ 283

[Close]

BLAST of CF811290 vs. TrEMBL
Match: D7TQ80|D7TQ80_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_40.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00025871001 PE=4 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 6.791e-9
Identity = 46/149 (30.87%), Postives = 66/149 (44.30%), Query Frame = 2

Query:   83 QVMELEESRNSLLQENLRLTEIVSGMQSQIQSLEKSIVSSCAVPVATMNDSGSEDVNSQMEAASQXXXXXXXXXXXXXXXXXXXXXXXDLQGVTAEPSPAVG---------------SVSEFRETTVAPGDIIDSRKHIPITDEKNGGD 484
            QVMELEE R ++LQEN  L E VS +Q QI+ LE+S+ S+ A    T + S   D+N Q EAA+                        D   V A  S A+G                +SE  + + A  + +D  + +P+ DE+   D
Sbjct:  231 QVMELEEFRINILQENQLLKEKVSSLQLQIKELEESVSSAHASTEITKHASKHVDLNPQTEAATVLIEKLTSENADLVEKVNELYIELDQLRVAAGLSSAIGLDKKIGALQNSNVADHMSEPTDNSSASSERMDPLEAVPMNDERISAD 379

HSP 2 Score: 29.261 bits (64), Expect = 6.791e-9
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 3

Query:    3 WIQKENSMEDTIARLNGDNTRLQIQ 77
            W+ KENS  + I+ LN +N +LQ Q
Sbjct:  207 WVLKENSSREIISSLNDENRKLQGQ 231

[Close]

BLAST of CF811290 vs. TrEMBL
Match: B9HDK7|B9HDK7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_762600 PE=4 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 5.437e-8
Identity = 35/115 (30.43%), Postives = 57/115 (49.57%), Query Frame = 2

Query:   83 QVMELEESRNSLLQENLRLTEIVSGMQSQIQSLEKSIVSSCAVPVATMNDSGSEDVNSQMEAASQXXXXXXXXXXXXXXXXXXXXXXXDLQGVTAEPSPAVGSVSEFRETTVAPG 427
            QV+ELE+SRNSL++EN +L E +S ++ Q+Q+++ S+  +    +  +  +  E++NSQ+EAA                         D QG  A  S A G     R + +A G
Sbjct:  267 QVVELEDSRNSLVKENQQLKESISNLKLQLQNIDTSVSFANTSELGKLG-AEKEELNSQIEAACALVDKLITENADLVEKVNELYIKLDHQGTAASFSSATGRGVIVRNSELANG 380

HSP 2 Score: 30.4166 bits (67), Expect = 5.437e-8
Identity = 13/25 (52.00%), Postives = 19/25 (76.00%), Query Frame = 3

Query:    3 WIQKENSMEDTIARLNGDNTRLQIQ 77
            W   EN+ ++TIAR+N D TRL++Q
Sbjct:  243 WTISENTTKETIARMNIDVTRLRMQ 267

[Close]

BLAST of CF811290 vs. TrEMBL
Match: B9IGV7|B9IGV7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_577204 PE=4 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.187e-7
Identity = 40/116 (34.48%), Postives = 57/116 (49.14%), Query Frame = 2

Query:   83 QVMELEESRNSLLQENLRLTEIVSGMQSQIQSLE-KSIVSSCAVPVATMNDSGSEDVNSQMEAASQXXXXXXXXXXXXXXXXXXXXXXXDLQGVTAEPSPAVGSVSEFRETTVAPG 427
            QV+ELE SRNSL++EN +L E VS ++ Q+Q++E +  +SS        ND+  ED+NSQ+EAA                         D Q   A  S + GS    R + +A G
Sbjct:  245 QVVELEYSRNSLVKENQQLKESVSDLKLQLQNVETQQSISSANTSELGKNDAEKEDLNSQIEAACALVDKLITENAELVEKVNELYIKLDQQKAAASLSSSAGSDVILRNSELANG 360

HSP 2 Score: 24.2534 bits (51), Expect = 1.187e-7
Identity = 9/25 (36.00%), Postives = 16/25 (64.00%), Query Frame = 3

Query:    3 WIQKENSMEDTIARLNGDNTRLQIQ 77
            W   EN+ ++ + R+N D T L++Q
Sbjct:  221 WAVSENTTKEIVGRMNIDITSLRMQ 245

[Close]

BLAST of CF811290 vs. Vitis vinifera peptide
Match: GSVIVT01025871001 (assembled CDS)

HSP 1 Score: 55.4546 bits (132), Expect = 3.253e-11
Identity = 46/149 (30.87%), Postives = 66/149 (44.30%), Query Frame = 2

Query:   83 QVMELEESRNSLLQENLRLTEIVSGMQSQIQSLEKSIVSSCAVPVATMNDSGSEDVNSQMEAASQXXXXXXXXXXXXXXXXXXXXXXXDLQGVTAEPSPAVG---------------SVSEFRETTVAPGDIIDSRKHIPITDEKNGGD 484
            QVMELEE R ++LQEN  L E VS +Q QI+ LE+S+ S+ A    T + S   D+N Q EAA+                        D   V A  S A+G                +SE  + + A  + +D  + +P+ DE+   D
Sbjct:  231 QVMELEEFRINILQENQLLKEKVSSLQLQIKELEESVSSAHASTEITKHASKHVDLNPQTEAATVLIEKLTSENADLVEKVNELYIELDQLRVAAGLSSAIGLDKKIGALQNSNVADHMSEPTDNSSASSERMDPLEAVPMNDERISAD 379

HSP 2 Score: 29.261 bits (64), Expect = 3.253e-11
Identity = 12/25 (48.00%), Postives = 17/25 (68.00%), Query Frame = 3

Query:    3 WIQKENSMEDTIARLNGDNTRLQIQ 77
            W+ KENS  + I+ LN +N +LQ Q
Sbjct:  207 WVLKENSSREIISSLNDENRKLQGQ 231

The following BLAST results are available for this feature:

BLAST of CF811290 vs. Populus trichocarpa peptide v2.0
BLAST of CF811290 vs. TrEMBL
BLAST of CF811290 vs. Vitis vinifera peptide

BLAST of CF811290 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
POPTR_0006s11080.1	5.595e-10	30.43		[more]
POPTR_0016s14590.1	9.421e-10	34.48		[more]

BLAST of CF811290 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 4


Match Name	E-value	Identity	Description
B9SRR6\|B9SRR6_RICCO	2.392e-9	49.21	Putative uncharacterized protein OS=Ricinus commun...	[more]
D7TQ80\|D7TQ80_VITVI	6.791e-9	30.87	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9HDK7\|B9HDK7_POPTR	5.437e-8	30.43	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9IGV7\|B9IGV7_POPTR	1.187e-7	34.48	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]

BLAST of CF811290 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1


Match Name	E-value	Identity	Description
GSVIVT01025871001	3.253e-11	30.87	assembled CDS	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 74..96 score
None	No IPR available	SEG	seg	seg	coord: 85..108 score

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF811290 ID=CF811290; Name=CF811290; organism=Vaccinium corymbosum; type=EST; length=662bp
GTTGGATCCAAAAGGAGAATTCAATGGAAGATACAATTGCTAGACTGAAT
GGTGATAACACAAGACTGCAAATTCAGCCTGGCAGGTGATGGAGTTGGAA
GAATCCCGAAACTCTCTCTTACAAGAAAACCTGCGGCTGACAGAAATCGT
GTCTGGTATGCAATCCCAGATCCAAAGTCTGGAGAAGAGTATTGTCTCTT
CTTGTGCGGTGCCTGTAGCAACAATGAATGATTCAGGAAGTGAGGACGTG
AATTCTCAGATGGAAGCAGCAAGTCAACTGGTTGAAAAATTAGTTGCTGA
AAATGAAGAGCTTGTAGAGAAGGTGAATGAATTATGTGTTGAGCTTGATC
TACAGGGTGTAACAGCTGAACCATCTCCGGCTGTTGGATCTGTATCTGAA
TTTAGGGAGACAACAGTTGCACCTGGTGACATAATAGATTCCAGAAAGCA
TATTCCAATTACAGATGAGAAGAACGGAGGGGATAATATGAATGCCAAGG
ATATTCCCGATTCCATATCTGAATTGAGTGAAAAAATGTTCCTATCAAGC
GAGAGGATCGAGTCCCGGGGAGATGTTTCTAGGCAAAATGGTGAACTTAG
TCACGCGGGTGCTTCTGTATTCAGAACTCTCCCCTGATACCATTGATTCT
GAAGAANTGNAB

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
noIPR	unintegrated