CV091412

EST Overview
NameCV091412
Unique NameCV091412
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length465
Libraries
Library NameType
LIBEST_014531 cDNA non acclimated Bluecrop librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Homology
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BLAST of CV091412 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0009s05590.1 ()

HSP 1 Score: 49.6766 bits (117), Expect = 9.704e-7
Identity = 22/50 (44.00%), Postives = 27/50 (54.00%), Query Frame = 3 
Query:    3 NCVVKXXXXXXXXXXXXXXXXXXIPRPMIEVPYHEYDGKVENSVSSEKKH 152
            NCVVK                  +P+PMI+VPYH +D + EN VS EKKH
Sbjct:   38 NCVVKFNFGPDFEFFPEDFGGRQVPKPMIDVPYHGFDNRAENGVSDEKKH 87
[Close]
BLAST of CV091412 vs. Vitis vinifera peptide
Match: GSVIVT01025234001 (assembled CDS)

HSP 1 Score: 50.0618 bits (118), Expect = 4.680e-7
Identity = 23/50 (46.00%), Postives = 28/50 (56.00%), Query Frame = 3 
Query:    3 NCVVKXXXXXXXXXXXXXXXXXXIPRPMIEVPYHEYDGKVENSVSSEKKH 152
            +CVVK                  +PRPMIEVPYH +D + EN VS+EKKH
Sbjct:  340 HCVVKFNFGPDFEFFPEELNGRPVPRPMIEVPYHGFDSQTENGVSNEKKH 389
The following BLAST results are available for this feature:
BLAST of CV091412 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
POPTR_0009s05590.19.704e-744.00[more]
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BLAST of CV091412 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010252340014.680e-746.00assembled CDS[more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 6..23
score
NoneNo IPR availableSEGsegsegcoord: 1..8
score
NoneNo IPR availableSEGsegsegcoord: 1..8
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CV091412 ID=CV091412; Name=CV091412; organism=Vaccinium corymbosum; type=EST; length=465bp
GAAATTGTGTTGTCAAGTTCAACTTTGGCCCTGATTTTGACTTCTTTCCA
GAAGACTTTGGTGGGCGCCCCATCCCAAGACCCATGATTGAAGTTCCTTA
TCATGAATATGATGGGAAAGTTGAGAATAGTGTGTCCAGTGAGAAGAAGC
ATTAGCTATGCATCATCATTTTGATGAGTTCAGAACATAGCGGAAGTTGG
GGATAGATTCATGTTTGATTTCTGTTGTAATCTTTGGATTTATTTCTGAT
ACAGTTGAGTGTTGTAACCTCAATTTTCCTTTGAAAAAGTAGAACGGCCT
TGGTGGACTGGAATGTCAGAAAAGATGTTGCGTGAGCTCCACTGACTATG
TTGTCTAAGGTTAATGTAGGAAAGGCACATATGTAAACATTTTGATCTGT
ATTTGATACAGTAAACATGAAGTTTCTTTGAGTTGAAAAAAANNNNNNNA
AANNNAAAAANNNNN
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated