CV091359

EST Overview
NameCV091359
Unique NameCV091359
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length760
Libraries
Library NameType
LIBEST_014531 cDNA non acclimated Bluecrop librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide2011-01-25
InterProScan analysis for Vaccinium corymbosum unigene v12011-01-18
Homology
BLAST of CV091359 vs. TrEMBL
Match: D7TSR3|D7TSR3_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_6.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00030843001 PE=4 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 6.020e-27
Identity = 66/143 (46.15%), Postives = 92/143 (64.34%), Query Frame = 2
Query:    5 TYTGEVGKSKRDAEQLAARAAILSIMGNPDSGTIIYEIIKCKFKFFAALSEVTNSNNTQDSFVPAAVTTGANLGCPLSKGKELEIPGCTNTMLNTAIPKTCSGQLSNIPATYQTFHEFKKPQLVPSAEAITPPIVFVPPVLKQ 433
            TYTG+ G++K++AEQLAAR  ILSI+GN  SGT++ EIIK K K +AAL  V + +      +P  +T+    G P  KGKE+E+   T+ +L TA+    SGQL ++P T+   HE +KP+   S+E I PPI FVP V +Q
Sbjct:  148 TYTGDAGRNKKEAEQLAARTVILSILGNSGSGTLLSEIIKSKVKLYAALHRVKDPSYIHTGILPIGLTS----GIPPCKGKEVEVAPGTDQLLPTAVSVPLSGQLVHVPVTHPPVHELEKPKPNVSSEVIAPPISFVPSVFEQ 286          
BLAST of CV091359 vs. TrEMBL
Match: B9GV44|B9GV44_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_552983 PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.102e-12
Identity = 37/70 (52.86%), Postives = 52/70 (74.29%), Query Frame = 2
Query:    5 TYTGEVGKSKRDAEQLAARAAILSIMGNPDSGTIIYEIIKCKFKFFAALSEVTNSNNTQDSFVPAAVTTG 214
            +YTG+ G++K++AEQLAARA ILS++GN  S  I+YEIIK K K +AAL  V + +++Q + VP AV  G
Sbjct:  265 SYTGDAGRNKKEAEQLAARAVILSLIGNSGSSKILYEIIKSKSKLYAALDRVKDPSHSQPNIVPVAVKVG 334          
BLAST of CV091359 vs. TrEMBL
Match: B9T2K0|B9T2K0_RICCO (Double-stranded RNA binding protein, putative OS=Ricinus communis GN=RCOM_0285330 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.687e-10
Identity = 48/144 (33.33%), Postives = 74/144 (51.39%), Query Frame = 2
Query:    5 TYTGEVGKSKRDAEQLAARAAILSIMGNPDSGTIIYEIIKCKFKFFAALSEVTNSNNTQDSFVPAAVTTGANLGCPLSKGKELEIPGCTNTMLNTAIPKTCSGQLSNIPATYQTFHEFKKPQLVPSAEAITPPIVFVPPVLKQS 436
            TY G++G++K++AEQLAARAA+LS++ N +SG II +  K K K +    + ++S + Q+S +P               GK+++      + +   IP+  S       A +   HEF K +     E I  PI FV PV  QS
Sbjct:  141 TYNGDIGRTKKEAEQLAARAAVLSLLRNVESGEIISKFFKSKRKLYVGFHK-SDSQDAQNSNMPVV-------------GKDIKTEALMVSNV-VPIPEAAS-------ALHPPHHEFTKTKPEKICEGIDLPIAFVHPVSGQS 262          
BLAST of CV091359 vs. Vitis vinifera peptide
Match: GSVIVT01030843001 (assembled CDS)

HSP 1 Score: 125.176 bits (313), Expect = 2.725e-29
Identity = 66/143 (46.15%), Postives = 92/143 (64.34%), Query Frame = 2
Query:    5 TYTGEVGKSKRDAEQLAARAAILSIMGNPDSGTIIYEIIKCKFKFFAALSEVTNSNNTQDSFVPAAVTTGANLGCPLSKGKELEIPGCTNTMLNTAIPKTCSGQLSNIPATYQTFHEFKKPQLVPSAEAITPPIVFVPPVLKQ 433
            TYTG+ G++K++AEQLAAR  ILSI+GN  SGT++ EIIK K K +AAL  V + +      +P  +T+    G P  KGKE+E+   T+ +L TA+    SGQL ++P T+   HE +KP+   S+E I PPI FVP V +Q
Sbjct:  148 TYTGDAGRNKKEAEQLAARTVILSILGNSGSGTLLSEIIKSKVKLYAALHRVKDPSYIHTGILPIGLTS----GIPPCKGKEVEVAPGTDQLLPTAVSVPLSGQLVHVPVTHPPVHELEKPKPNVSSEVIAPPISFVPSVFEQ 286          
The following BLAST results are available for this feature:
BLAST of CV091359 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
D7TSR3|D7TSR3_VITVI6.020e-2746.15Whole genome shotgun sequence of line PN40024, sca... [more]
B9GV44|B9GV44_POPTR1.102e-1252.86Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9T2K0|B9T2K0_RICCO6.687e-1033.33Double-stranded RNA binding protein, putative OS=R... [more]
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BLAST of CV091359 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010308430012.725e-2946.15assembled CDS[more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001159Double-stranded RNA-bindingPROFILEPS50137DS_RBDcoord: 1..28
score: 8
NoneNo IPR availableSEGsegsegcoord: 161..180
score
NoneNo IPR availableSEGsegsegcoord: 3..41
score
NoneNo IPR availableSEGsegsegcoord: 8..27
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CV091359 ID=CV091359; Name=CV091359; organism=Vaccinium corymbosum; type=EST; length=760bp
GGCTACTTACACCGGTGAGGTGGGCAAAAGCAAGAGAGATGCTGAGCAGT
TGGCAGCACGGGCTGCTATCCTTTCAATTATGGGTAATCCTGATTCTGGA
ACTATTATCTATGAGATCATTAAGTGTAAATTCAAGTTTTTTGCTGCTTT
GAGTGAAGTTACAAACTCAAACAATACCCAGGATAGCTTTGTGCCTGCGG
CTGTGACTACAGGAGCTAATTTAGGCTGTCCTCTCAGCAAGGGTAAAGAA
CTGGAAATTCCTGGGTGCACCAATACCATGCTCAACACAGCCATTCCAAA
GACATGCTCTGGTCAACTTAGCAATATTCCAGCAACGTACCAGACTTTCC
ATGAATTCAAAAAACCTCAATTAGTACCATCAGCTGAGGCAATCACTCCT
CCCATTGTGTTTGTACCTCCTGTCCTCAAACAGTCTCCTGCCCTCAAACA
GTCTCCTGTCCTCAAACAGTCTCTTGGTGTTGCTTCAAGTTCTGCTAAAA
AGAAGAGAAATCGTAAGAACAAGAAGGCTAAAAGGAAAAATCCAGCTTGA
TCAGCTCCGTTTCAATCTACTGTGACGCTTTCAATAAAGCCCATCCTCGT
TCAACCATTCGATGGGAAGTGCAAATTCCATTTGTGTGTTATGCGTGGTG
CAGTTCAAGGCTTCCTCTTTCATGTTGGAGTTGGACCATTGATAGCTTTA
ATGTAGTGTAAGATACATTAGACAAATGAGGTCGTTCTTAGTTACTACGT
TCTGGNGGNT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003725double-stranded RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular anatomical structure
Vocabulary: INTERPRO
TermDefinition
IPR001159Double-stranded RNA-binding
noIPRunintegrated