CV189850

EST Overview
NameCV189850
Unique NameCV189850
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length636
Libraries
Library NameType
LIBEST_016374 Vco01cdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Homology
BLAST of CV189850 vs. P. persica 1.0 peptide
Match: ppb021546m ()

HSP 1 Score: 63.929 bits (154), Expect = 6.613e-11
Identity = 36/87 (41.38%), Postives = 45/87 (51.72%), Query Frame = 1
Query:  385 KISAALSDKGYVAMXXXXXXXXXXXXAA---EXXXXXXXXXVFCPPDKAFFTLKYPQAPITLLKYHIVPSNLDRESLESSLPDESQI 636
            K SA LSDKGY AM                           +FCP D+AFF  KYPQ P+TLLKYHIVP   DR+++E+ +   S +
Sbjct:   61 KPSAVLSDKGYHAMSLTLDTILEAVIMPAIQSLNHTNTTFTLFCPRDQAFFNSKYPQPPLTLLKYHIVPFKFDRDTIEAYVGHGSNV 147          
BLAST of CV189850 vs. P. persica 1.0 peptide
Match: ppa021285m ()

HSP 1 Score: 53.9138 bits (128), Expect = 6.844e-8
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:  499 VFCPPDKAFFTLKYPQAP-ITLLKYHIVPSNLDRESLESS 615
            +FCP D+AFF  KYPQ P +TLLKYHIVP  +D  ++E+S
Sbjct:   53 LFCPQDQAFFNSKYPQPPPLTLLKYHIVPFKIDPHTMEAS 92          
BLAST of CV189850 vs. TrEMBL
Match: A5BK40|A5BK40_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043604 PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.006e-13
Identity = 43/105 (40.95%), Postives = 59/105 (56.19%), Query Frame = 1
Query:  325 PSKETLTNLNHHQLHGLEIEKISAALSDKGYVAMXXXXXXXXXXXXA-AEXXXXXXXXXVFCPPDKAFFTLKYPQAPITLLKYHIVPSNLDRESLESSLPDESQI 636
            P+         H++    IE IS ALSDKGY++M              +E         +FCPP+KAF  LKYPQ P+TLL+Y I PS L+RE+LESSL  ++++
Sbjct:   26 PTARATEPXTSHEIEVFNIEAISNALSDKGYLSMALSLQLALKSNLIPSEVSDDNTRVTIFCPPNKAFSELKYPQPPLTLLQYQISPSELNREALESSLGPDAKV 130          
BLAST of CV189850 vs. TrEMBL
Match: D7U1H8|D7U1H8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_37.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00023712001 PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.620e-13
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  358 HQLHGLEIEKISAALSDKGYVAMXXXXXXXXXXXXA-AEXXXXXXXXXVFCPPDKAFFTLKYPQAPITLLKYHIVPSNLDRESLESSLPDESQI 636
            H++    IE IS ALSDKGY++M              +E         +FCPP+KAF  LKYPQ P+TLL+Y I PS L+RE+LESSL  ++++
Sbjct:   54 HEIEVFNIEAISNALSDKGYLSMALSLQLALKSNLIPSEVRDDNTRVTIFCPPNKAFSELKYPQPPLTLLQYQISPSELNREALESSLGPDAKV 147          
BLAST of CV189850 vs. Vitis vinifera peptide
Match: GSVIVT01023712001 (assembled CDS)

HSP 1 Score: 79.337 bits (194), Expect = 1.301e-15
Identity = 42/94 (44.68%), Postives = 57/94 (60.64%), Query Frame = 1
Query:  358 HQLHGLEIEKISAALSDKGYVAMXXXXXXXXXXXXA-AEXXXXXXXXXVFCPPDKAFFTLKYPQAPITLLKYHIVPSNLDRESLESSLPDESQI 636
            H++    IE IS ALSDKGY++M              +E         +FCPP+KAF  LKYPQ P+TLL+Y I PS L+RE+LESSL  ++++
Sbjct:   54 HEIEVFNIEAISNALSDKGYLSMALSLQLALKSNLIPSEVRDDNTRVTIFCPPNKAFSELKYPQPPLTLLQYQISPSELNREALESSLGPDAKV 147          
The following BLAST results are available for this feature:
BLAST of CV189850 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
ppb021546m6.613e-1141.38[more]
ppa021285m6.844e-860.00[more]
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BLAST of CV189850 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A5BK40|A5BK40_VITVI2.006e-1340.95Putative uncharacterized protein OS=Vitis vinifera... [more]
D7U1H8|D7U1H8_VITVI2.620e-1344.68Whole genome shotgun sequence of line PN40024, sca... [more]
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BLAST of CV189850 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010237120011.301e-1544.68assembled CDS[more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000782FAS1 domainGENE3D2.30.180.10no descriptioncoord: 88..144
score: 9.2
IPR000782FAS1 domainPFAMPF02469Fasciclincoord: 88..144
score: 2.6
IPR000782FAS1 domainPROFILEPS50213FAS1coord: 66..152
score: 11
NoneNo IPR availableSEGsegsegcoord: 26..37
score: NAcoord: 83..94
score: NAcoord: 98..106
score
NoneNo IPR availableSEGsegsegcoord: 41..60
score
NoneNo IPR availableSEGsegsegcoord: 3..19
score: NAcoord: 47..54
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CV189850 ID=CV189850; Name=CV189850; organism=Vaccinium corymbosum; type=EST; length=636bp
ATGGGACGAGAAATTGATTGGGGCTCAAGATCCCATTCTTATACCGTTTG
GGATTCAATTTTGTATGTTAATCCAAGTGGGGCTTTCCTAATCCTAAAGC
AAATAGAAAACGTGTCCACGTTAATTATAAATAAGCAGCGGCAGTGCTTA
GGGTTCCGAAACCTCTGCATAGTCTTTTGAACCCTATTTCTTCTTCAGAA
ATCTTCTCTTCTTGCAAATTACCCAAGTTTTGTTTTTTCTCTCATGGCTT
CCATTCTTCTACTCAAACCCTTTCTCGTTCTAGTTTGTCTCTCAGTTCTC
CTCCCACAACACTCTGTTTCAACACCATCCAAAGAAACTCTCACTAATTT
GAATCATCATCAACTTCATGGGTTGGAAATAGAGAAGATCTCCGCTGCTC
TATCCGACAAAGGCTACGTAGCCATGTCCATAATTTTACAAAGCACTCTC
TCTTCTTTACTTGCTGCCGAAAATACCAACACCACCACTACATTCACCGT
CTTCTGCCCTCCTGATAAGGCTTTCTTCACTCTGAAATACCCACAGGCCC
CAATCACTCTCCTTAAATACCACATAGTCCCAAGCAATCTTGACAGAGAA
TCACTTGAATCATCTCTTCCGGACGAGTCCCAGATT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
IPR000782FAS1_domain
noIPRunintegrated