CV189858 | GDV

EST Overview


Name	CV189858
Unique Name	CV189858
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	615

Libraries


Library Name	Type
LIBEST_016374 Vco01	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of CV189858 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0019s05090.2 ()

HSP 1 Score: 71.633 bits (174), Expect = 4.177e-13
Identity = 65/141 (46.10%), Postives = 75/141 (53.19%), Query Frame = 3

Query:  222 SQDMEKEEKNQNQKLCSGKPPE--LKWSKLKRSRCPRRVRDHGNSYQSYLDRVRRKITSPI-----LTTPSEKEISFLQTTRLSRNSEGVGLLQS--ENRKTGSGSSPEKEEDRNYARRGE-GADVNNINGKAGSRDGGGG 614
            S DMEKEE+NQ    C    PE  L+W   KR RC R VRD     +      RRKITS I      +  +EK+ S LQ+ R++RNSE   L  S  ENRK+   SSPEK EDR Y  RG  G D    NGK  S DG  G
Sbjct:    4 SIDMEKEERNQRAS-CKSLEPEFFLQWGNKKRLRCVR-VRDPQIISRRSDGVFRRKITSRIDRFVVSSATTEKDTSLLQSNRITRNSEAAVLRSSVAENRKS---SSPEK-EDRYYTTRGSVGLDE---NGKV-SMDGNNG 134

[Close]

BLAST of CV189858 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0019s05090.1 ()

HSP 1 Score: 71.633 bits (174), Expect = 4.177e-13
Identity = 65/141 (46.10%), Postives = 75/141 (53.19%), Query Frame = 3

Query:  222 SQDMEKEEKNQNQKLCSGKPPE--LKWSKLKRSRCPRRVRDHGNSYQSYLDRVRRKITSPI-----LTTPSEKEISFLQTTRLSRNSEGVGLLQS--ENRKTGSGSSPEKEEDRNYARRGE-GADVNNINGKAGSRDGGGG 614
            S DMEKEE+NQ    C    PE  L+W   KR RC R VRD     +      RRKITS I      +  +EK+ S LQ+ R++RNSE   L  S  ENRK+   SSPEK EDR Y  RG  G D    NGK  S DG  G
Sbjct:    4 SIDMEKEERNQRAS-CKSLEPEFFLQWGNKKRLRCVR-VRDPQIISRRSDGVFRRKITSRIDRFVVSSATTEKDTSLLQSNRITRNSEAAVLRSSVAENRKS---SSPEK-EDRYYTTRGSVGLDE---NGKV-SMDGNNG 134

[Close]

BLAST of CV189858 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0013s05410.1 ()

HSP 1 Score: 71.2478 bits (173), Expect = 5.455e-13
Identity = 63/138 (45.65%), Postives = 74/138 (53.62%), Query Frame = 3

Query:  228 DMEKEEKNQNQKLCSGKPPE--LKWSKLKRSRCPRRVRDHGNSYQSYLDRVRRKITSPI-----LTTPSEKEISFLQTTRLSRNSEGVGLLQS--ENRKTGSGSSPEKEEDRNYARRGEGADVNNINGKAGSRDGGGG 614
            DMEKEE+NQ +  C G  PE  L+W   KR RC R VRD     Q      RRK TS I      +  +EK+    Q+ RL+RNSE   L  S  ENRK+   SSPEK EDR Y  RG G  + + NGK  S DG  G
Sbjct:    6 DMEKEERNQ-RATCKGLEPEFFLQWGNKKRLRCVR-VRDPQIISQRSDGVFRRKTTSRIDRFVVSSATTEKDTYLPQSNRLTRNSEAAILRSSVTENRKS---SSPEK-EDRCYTTRGSG--ILDENGKV-SMDGNNG 134

[Close]

BLAST of CV189858 vs. P. persica 1.0 peptide
Match: ppa011271m ()

HSP 1 Score: 64.3142 bits (155), Expect = 4.720e-11
Identity = 55/126 (43.65%), Postives = 65/126 (51.59%), Query Frame = 3

Query:  231 MEKEEKNQNQKLCSGKPPELKWSKLKRSRCPRRVRDHGNSYQSYLDR-VRRKITSPIL----TTPSEKEISFLQTTRLSRNSEGVGLLQ--SENRKTGSGSSPEKEEDRNYARRGEGADVNNINGK 587
            ME EE+NQ     S     L+W   KR RC   VR  G+     L+  + RKITS  +     + SEKE S LQ+ RL+ NSEG  L     ENRK+   SSPEK EDR Y  RG      N NGK
Sbjct:    1 METEERNQRAPKASEPEFFLQWGNRKRLRC---VRVKGSEISERLNGGIFRKITSSRIHRFADSASEKENSHLQSNRLTMNSEGTMLRSGAGENRKS---SSPEK-EDRYYTTRGSVGVDENGNGK 119

[Close]

BLAST of CV189858 vs. P. persica 1.0 peptide
Match: ppa011287m ()

HSP 1 Score: 64.3142 bits (155), Expect = 4.720e-11
Identity = 55/126 (43.65%), Postives = 65/126 (51.59%), Query Frame = 3

Query:  231 MEKEEKNQNQKLCSGKPPELKWSKLKRSRCPRRVRDHGNSYQSYLDR-VRRKITSPIL----TTPSEKEISFLQTTRLSRNSEGVGLLQ--SENRKTGSGSSPEKEEDRNYARRGEGADVNNINGK 587
            ME EE+NQ     S     L+W   KR RC   VR  G+     L+  + RKITS  +     + SEKE S LQ+ RL+ NSEG  L     ENRK+   SSPEK EDR Y  RG      N NGK
Sbjct:    1 METEERNQRAPKASEPEFFLQWGNRKRLRC---VRVKGSEISERLNGGIFRKITSSRIHRFADSASEKENSHLQSNRLTMNSEGTMLRSGAGENRKS---SSPEK-EDRYYTTRGSVGVDENGNGK 119

[Close]

BLAST of CV189858 vs. TrEMBL
Match: D7TI71|D7TI71_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00033408001 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.474e-12
Identity = 60/137 (43.80%), Postives = 77/137 (56.20%), Query Frame = 3

Query:  231 MEKEEKNQNQKLCSGKPPE----LKWSKLKRSRCPRRVRDHGNSYQSYLDRVRRKITSPI---LTTPSEKEISFLQTTRLSRNSEGVGL--LQSENRKTGSGSSPEKEEDRNYARRGEGADVNNINGKAGSRDGGGG 614
            MEKEEK+Q     + K PE    L+W   KR RC R V+D   S +S    +RRKITS I   + T SEKE + LQ +R +RN+EG  L  + +ENRK+GS     ++EDR Y  RG      + NGK     GGGG
Sbjct:    1 MEKEEKSQR----TYKGPETDFFLQWGNRKRLRCVR-VKDPNVSVRSN-GAIRRKITSRIDRSVVTGSEKESAHLQPSRFTRNTEGATLRSVTNENRKSGS----SEKEDRYYTTRGSAG--MDDNGKVSVEGGGGG 125

[Close]

BLAST of CV189858 vs. TrEMBL
Match: A9PH88|A9PH88_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.552e-11
Identity = 63/138 (45.65%), Postives = 74/138 (53.62%), Query Frame = 3

Query:  228 DMEKEEKNQNQKLCSGKPPE--LKWSKLKRSRCPRRVRDHGNSYQSYLDRVRRKITSPI-----LTTPSEKEISFLQTTRLSRNSEGVGLLQS--ENRKTGSGSSPEKEEDRNYARRGEGADVNNINGKAGSRDGGGG 614
            DMEKEE+NQ +  C G  PE  L+W   KR RC R VRD     Q      RRK TS I      +  +EK+    Q+ RL+RNSE   L  S  ENRK+   SSPEK EDR Y  RG G  + + NGK  S DG  G
Sbjct:    6 DMEKEERNQ-RATCKGLEPEFFLQWGNKKRLRCVR-VRDPQIISQRSDGVFRRKTTSRIDRFVVSSATTEKDTYLPQSNRLTRNSEAAILRSSVTENRKS---SSPEK-EDRCYTTRGSG--ILDENGKV-SMDGNNG 134

[Close]

BLAST of CV189858 vs. TrEMBL
Match: B9IPQ6|B9IPQ6_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_573929 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.252e-10
Identity = 63/138 (45.65%), Postives = 73/138 (52.90%), Query Frame = 3

Query:  231 MEKEEKNQNQKLCSGKPPE--LKWSKLKRSRCPRRVRDHGNSYQSYLDRVRRKITSPI-----LTTPSEKEISFLQTTRLSRNSEGVGLLQS--ENRKTGSGSSPEKEEDRNYARRGE-GADVNNINGKAGSRDGGGG 614
            MEKEE+NQ    C    PE  L+W   KR RC R VRD     +      RRKITS I      +  +EK+ S LQ+ R++RNSE   L  S  ENRK+   SSPEK EDR Y  RG  G D    NGK  S DG  G
Sbjct:    1 MEKEERNQRAS-CKSLEPEFFLQWGNKKRLRCVR-VRDPQIISRRSDGVFRRKITSRIDRFVVSSATTEKDTSLLQSNRITRNSEAAVLRSSVAENRKS---SSPEK-EDRYYTTRGSVGLDE---NGKV-SMDGNNG 128

[Close]

BLAST of CV189858 vs. TrEMBL
Match: B9I5X5|B9I5X5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_571202 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.252e-10
Identity = 62/137 (45.26%), Postives = 73/137 (53.28%), Query Frame = 3

Query:  231 MEKEEKNQNQKLCSGKPPE--LKWSKLKRSRCPRRVRDHGNSYQSYLDRVRRKITSPI-----LTTPSEKEISFLQTTRLSRNSEGVGLLQS--ENRKTGSGSSPEKEEDRNYARRGEGADVNNINGKAGSRDGGGG 614
            MEKEE+NQ +  C G  PE  L+W   KR RC R VRD     Q      RRK TS I      +  +EK+    Q+ RL+RNSE   L  S  ENRK+   SSPEK EDR Y  RG G  + + NGK  S DG  G
Sbjct:    1 MEKEERNQ-RATCKGLEPEFFLQWGNKKRLRCVR-VRDPQIISQRSDGVFRRKTTSRIDRFVVSSATTEKDTYLPQSNRLTRNSEAAILRSSVTENRKS---SSPEK-EDRCYTTRGSG--ILDENGKV-SMDGNNG 128

[Close]

BLAST of CV189858 vs. TrEMBL
Match: B9SHF2|B9SHF2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1121490 PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.577e-7
Identity = 52/134 (38.81%), Postives = 68/134 (50.75%), Query Frame = 3

Query:  231 MEKEEKNQNQKLCSGKPPELKWSKLKRSRCPRRVRDHGNSYQSYLDRVRRKITSPI----LTTPSEKEISFLQTT-RLSRNSEGVGLLQSENRKTGSGSSPEKEEDRNYARRGEGADVN-NINGKAGSRDGGGG 614
            M+KEEK+Q           L+W   KR RC R VRD     Q      RRKIT+ I    +++ ++KE S  Q+  RL+RNSE   +L+S   +    +SPEK EDR Y  RG    V  + NGK  S D   G
Sbjct:    1 MDKEEKSQRVNKALEPDFFLQWGNKKRLRCVR-VRDPQIISQRSDGVFRRKITTRIDRRVISSTTDKETSHPQSNHRLTRNSEAAAILRSSVTENKKSASPEK-EDRYYTTRGSVVGVGVDENGKV-SWDANNG 131

[Close]

BLAST of CV189858 vs. Vitis vinifera peptide
Match: GSVIVT01033408001 (assembled CDS)

HSP 1 Score: 75.485 bits (184), Expect = 1.752e-14
Identity = 60/137 (43.80%), Postives = 77/137 (56.20%), Query Frame = 3

Query:  231 MEKEEKNQNQKLCSGKPPE----LKWSKLKRSRCPRRVRDHGNSYQSYLDRVRRKITSPI---LTTPSEKEISFLQTTRLSRNSEGVGL--LQSENRKTGSGSSPEKEEDRNYARRGEGADVNNINGKAGSRDGGGG 614
            MEKEEK+Q     + K PE    L+W   KR RC R V+D   S +S    +RRKITS I   + T SEKE + LQ +R +RN+EG  L  + +ENRK+GS     ++EDR Y  RG      + NGK     GGGG
Sbjct:    1 MEKEEKSQR----TYKGPETDFFLQWGNRKRLRCVR-VKDPNVSVRSN-GAIRRKITSRIDRSVVTGSEKESAHLQPSRFTRNTEGATLRSVTNENRKSGS----SEKEDRYYTTRGSAG--MDDNGKVSVEGGGGG 125

The following BLAST results are available for this feature:

BLAST of CV189858 vs. Populus trichocarpa peptide v2.0
BLAST of CV189858 vs. P. persica 1.0 peptide
BLAST of CV189858 vs. TrEMBL
BLAST of CV189858 vs. Vitis vinifera peptide

BLAST of CV189858 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 3


Match Name	E-value	Identity
POPTR_0019s05090.2	4.177e-13	46.10	[more]
POPTR_0019s05090.1	4.177e-13	46.10	[more]
POPTR_0013s05410.1	5.455e-13	45.65	[more]

BLAST of CV189858 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
ppa011271m	4.720e-11	43.65		[more]
ppa011287m	4.720e-11	43.65		[more]

BLAST of CV189858 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
D7TI71\|D7TI71_VITVI	3.474e-12	43.80	Whole genome shotgun sequence of line PN40024, sca...	[more]
A9PH88\|A9PH88_POPTR	6.552e-11	45.65	Putative uncharacterized protein OS=Populus tricho...	[more]
B9IPQ6\|B9IPQ6_POPTR	3.252e-10	45.65	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9I5X5\|B9I5X5_POPTR	3.252e-10	45.26	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9SHF2\|B9SHF2_RICCO	2.577e-7	38.81	Putative uncharacterized protein OS=Ricinus commun...	[more]

BLAST of CV189858 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1


Match Name	E-value	Identity	Description
GSVIVT01033408001	1.752e-14	43.80	assembled CDS	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 6..18 score: NAcoord: 46..57 score
None	No IPR available	SEG	seg	seg	coord: 68..86 score

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV189858 ID=CV189858; Name=CV189858; organism=Vaccinium corymbosum; type=EST; length=615bp
CGGGCTGCAGGAATCGGCACGAGGGAGAAAGTCTTTTGCTANGAGAGAGA
AGTCGGAGAAATTGCTAATCTGGGTTTTTCTTTGATTTGAAGGAAACAAG
AATGGTTCTTTCTTTTCTTCTTCGGAGAAAATCTCATCTTTCTGGCTTCT
CCGACGTGGAAAAGCTCATTTACTCAATTTTCTAGCAAGATTTGCTCTGG
ATTTCTTGCAAAAGCCGTAGATCTCAAGATATGGAGAAAGAAGAGAAGAA
TCAGAATCAAAAATTGTGTAGCGGCAAGCCACCAGAACTAAAGTGGAGTA
AACTGAAGAGAAGCAGGTGTCCTAGGAGAGTCAGAGACCACGGGAATTCC
TATCAATCCTACCTCGACAGAGTTCGCCGGAAAATCACATCTCCGATCCT
CACCACTCCCTCCGAGAAAGAGATCTCTTTTCTTCAAACCACTCGCCTCT
CCAGGAATTCTGAGGGGGTTGGTCTGCTACAATCAGAGAATCGGAAAACT
GGATCTGGGTCGTCGCCGGAGAAGGAGGAGGACAGAAATTATGCGAGGAG
AGGAGAGGGGGCGGATGTGAATAATATCAATGGCAAAGCAGGTTCAAGGG
ATGGAGGAGGTGGAG

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
noIPR	unintegrated