CV190386 | GDV

EST Overview


Name	CV190386
Unique Name	CV190386
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	663

Libraries


Library Name	Type
LIBEST_016374 Vco01	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Swissprot	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide	2011-02-10
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of CV190386 vs. DB:swissprot:display
Match: ORTH2_ARATH (E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana GN=ORTH2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.769e-26
Identity = 58/86 (67.44%), Postives = 68/86 (79.07%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEEADT 287
            +V+TLP+TTPCAHNFCKACLE  F G+T  RER S GGRTLRS+KNV+ CP C  DIS+FL+NPQVNRE+  VIE L  K +E DT
Sbjct:  523 QVLTLPVTTPCAHNFCKACLEAKFAGKTLVRER-STGGRTLRSRKNVLNCPCCPTDISDFLQNPQVNREVAEVIEKL--KTQEEDT 605

[Close]

BLAST of CV190386 vs. DB:swissprot:display
Match: ORTH1_ARATH (E3 ubiquitin-protein ligase ORTHRUS 1 OS=Arabidopsis thaliana GN=ORTH1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.922e-26
Identity = 54/85 (63.53%), Postives = 67/85 (78.82%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEEAD 284
            +V++LP+TTPCAHNFCKACLE  F G T  RER + GGR LR++KN+M CP CT D+SEFL+NPQVNRE+M +IE  +   EEAD
Sbjct:  500 EVLSLPVTTPCAHNFCKACLEAKFAGITQLRERSN-GGRKLRAKKNIMTCPCCTTDLSEFLQNPQVNREMMEIIENFKKSEEEAD 583

[Close]

BLAST of CV190386 vs. DB:swissprot:display
Match: ORTH3_ARATH (E3 ubiquitin-protein ligase ORTHRUS 3 OS=Arabidopsis thaliana GN=ORTH3 PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.167e-25
Identity = 56/83 (67.47%), Postives = 64/83 (77.11%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEE 278
            KVMT P+TTPCAHNFCKACLE  F G    RER S GGR LRSQK+VMKCP C  DI+EF++NPQVNRE+  VIE L+ + EE
Sbjct:  533 KVMTNPVTTPCAHNFCKACLESKFAGTALVRERGS-GGRKLRSQKSVMKCPCCPTDIAEFVQNPQVNREVAEVIEKLKKQEEE 614

[Close]

BLAST of CV190386 vs. DB:swissprot:display
Match: ORTH5_ARATH (E3 ubiquitin-protein ligase ORTHRUS 5 OS=Arabidopsis thaliana GN=ORTH5 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.212e-24
Identity = 52/85 (61.18%), Postives = 66/85 (77.65%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEEAD 284
            KV++LP+TTPCAHNFCKACLE  F G T  R+R + G R LR++KN+M CP CT D+SEFL+NPQVNRE+M +IE  +   EEA+
Sbjct:  503 KVLSLPVTTPCAHNFCKACLEAKFAGITQLRDRSN-GVRKLRAKKNIMTCPCCTTDLSEFLQNPQVNREMMEIIENFKKSEEEAE 586

[Close]

BLAST of CV190386 vs. DB:swissprot:display
Match: ORTH4_ARATH (Putative E3 ubiquitin-protein ligase ORTHRUS 4 OS=Arabidopsis thaliana GN=ORTH4 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.212e-24
Identity = 52/85 (61.18%), Postives = 66/85 (77.65%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEEAD 284
            KV++LP+TTPCAHNFCKACLE  F G T  R+R + G R LR++KN+M CP CT D+SEFL+NPQVNRE+M +IE  +   EEA+
Sbjct:  503 KVLSLPVTTPCAHNFCKACLEAKFAGITQLRDRSN-GVRKLRAKKNIMTCPCCTTDLSEFLQNPQVNREMMEIIENFKKSEEEAE 586

[Close]

BLAST of CV190386 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0001s12980.1 ()

HSP 1 Score: 129.798 bits (325), Expect = 1.467e-30
Identity = 63/83 (75.90%), Postives = 70/83 (84.34%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEE 278
            KVM  PITTPCAHNFCKACLEGAF GQ+F R+R   G RTLR QKNVMKCPSC +DI++FL+NPQVNRELM VIE LQ +AEE
Sbjct:  514 KVMVYPITTPCAHNFCKACLEGAFAGQSFTRQRGQ-GRRTLRVQKNVMKCPSCIIDIADFLQNPQVNRELMGVIESLQRQAEE 595

[Close]

BLAST of CV190386 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0003s16080.1 ()

HSP 1 Score: 129.798 bits (325), Expect = 1.467e-30
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEE 278
            KVM  PITTPCAHNFCKACLEGAF GQ+  R+R   G RTLR+QKNVMKCPSCT+DI++FL+NPQVNRELM VIE LQ +AE+
Sbjct:  513 KVMANPITTPCAHNFCKACLEGAFAGQSLTRQRGQ-GRRTLRAQKNVMKCPSCTIDIADFLQNPQVNRELMGVIESLQQQAEQ 594

[Close]

BLAST of CV190386 vs. P. persica 1.0 peptide
Match: ppa015406m ()

HSP 1 Score: 105.916 bits (263), Expect = 1.602e-23
Identity = 49/65 (75.38%), Postives = 56/65 (86.15%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQ 224
            +VMT PITTPCAHNFCK CLEGAF G++F RER + GGR+LRSQKNVM CPSC  DIS+FL+NPQ
Sbjct:  514 QVMTSPITTPCAHNFCKLCLEGAFAGKSFVRER-NRGGRSLRSQKNVMNCPSCPTDISDFLQNPQ 577

[Close]

BLAST of CV190386 vs. TrEMBL
Match: B9RG02|B9RG02_RICCO (Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1438390 PE=4 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.827e-28
Identity = 61/85 (71.76%), Postives = 70/85 (82.35%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEEAD 284
            KVMT P+TTPC HNFCKACLEGAF GQ+F R+R   G RTLR QKNVMKCPSCT DI+E+L+NPQVNRELM VIE LQ +  E++
Sbjct:  514 KVMTNPLTTPCGHNFCKACLEGAFAGQSFTRQRTCQGRRTLRVQKNVMKCPSCTNDIAEYLQNPQVNRELMGVIEALQRRNAESE 598

[Close]

BLAST of CV190386 vs. TrEMBL
Match: B9GZ20|B9GZ20_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_817505 PE=4 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.827e-28
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEE 278
            KVM  PITTPCAHNFCKACLEGAF GQ+  R+R   G RTLR+QKNVMKCPSCT+DI++FL+NPQVNRELM VIE LQ +AE+
Sbjct:  513 KVMANPITTPCAHNFCKACLEGAFAGQSLTRQRGQ-GRRTLRAQKNVMKCPSCTIDIADFLQNPQVNRELMGVIESLQQQAEQ 594

[Close]

BLAST of CV190386 vs. TrEMBL
Match: B9GMU0|B9GMU0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_847253 PE=4 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.827e-28
Identity = 63/83 (75.90%), Postives = 70/83 (84.34%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEE 278
            KVM  PITTPCAHNFCKACLEGAF GQ+F R+R   G RTLR QKNVMKCPSC +DI++FL+NPQVNRELM VIE LQ +AEE
Sbjct:  514 KVMVYPITTPCAHNFCKACLEGAFAGQSFTRQRGQ-GRRTLRVQKNVMKCPSCIIDIADFLQNPQVNRELMGVIESLQRQAEE 595

[Close]

BLAST of CV190386 vs. TrEMBL
Match: D7TFI9|D7TFI9_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_150.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00001091001 PE=4 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.184e-27
Identity = 60/83 (72.29%), Postives = 69/83 (83.13%), Query Frame = 3

Query:   33 VMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEEA 281
            VM LP+TTPCAHNFCK+CLEGAF+GQTF R+R   G RTLR+QKNVMKCPSC  DIS+FL+NPQVNRELM VI  LQ +  E+
Sbjct:  518 VMVLPLTTPCAHNFCKSCLEGAFSGQTFVRQRTCEGRRTLRAQKNVMKCPSCPNDISDFLQNPQVNRELMDVIVSLQRRTVES 600

[Close]

BLAST of CV190386 vs. TrEMBL
Match: B9SU90|B9SU90_RICCO (Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0571480 PE=4 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.309e-26
Identity = 63/116 (54.31%), Postives = 78/116 (67.24%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEEADTXXXXXXXXXXXXXGTCKRMRLDSIDDAGRK 377
            +VM  PITTPCAHNFCK+CLEGAFTG+T  RER S GGRTLR+QKN+M CP C  DIS+FL++P+VNRE+M VIE LQ + EE                       +DS+DD+G +
Sbjct:  523 QVMNQPITTPCAHNFCKSCLEGAFTGKTLMRER-SKGGRTLRAQKNIMHCPRCPTDISDFLQDPKVNREVMAVIESLQRQTEET----------------------VDSVDDSGEE 615

[Close]

BLAST of CV190386 vs. TrEMBL
Match: D7KT43|D7KT43_ARALY (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_676015 PE=4 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.497e-26
Identity = 56/86 (65.12%), Postives = 70/86 (81.40%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEEADT 287
            KV++ P+TTPCAHNFCKACLE  F G +  RER S GGRTLR++KN+M CP CT D+S+FL+NPQVNRE+M VIE L+ K EEA++
Sbjct:  503 KVLSFPVTTPCAHNFCKACLEAKFAGVSQVRER-SRGGRTLRAKKNIMTCPCCTTDLSDFLQNPQVNREMMEVIENLKKKEEEAES 587

[Close]

BLAST of CV190386 vs. TrEMBL
Match: D7KT42|D7KT42_ARALY (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_676014 PE=4 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.497e-26
Identity = 56/86 (65.12%), Postives = 70/86 (81.40%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEEADT 287
            KV++ P+TTPCAHNFCKACLE  F G +  RER S GGRTLR++KN+M CP CT D+S+FL+NPQVNRE+M VIE L+ K EEA++
Sbjct:  501 KVLSFPVTTPCAHNFCKACLEAKFAGVSQVRER-SRGGRTLRAKKNIMTCPCCTTDLSDFLQNPQVNREMMEVIENLKKKEEEAES 585

[Close]

BLAST of CV190386 vs. TrEMBL
Match: D7KYM7|D7KYM7_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_315436 PE=4 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.890e-25
Identity = 60/89 (67.42%), Postives = 69/89 (77.53%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQ----DKAEEAD 284
            +V+TLP+TTPCAHNFCKACLE  F G+T  RER S GGRTLR+QKNVM CP C  DIS+FL+NPQVNRE+M VIE L+    D AE  D
Sbjct:  520 QVLTLPVTTPCAHNFCKACLEAKFAGKTLVRER-SRGGRTLRAQKNVMNCPCCPTDISDFLQNPQVNREVMEVIERLKNQEVDNAEIVD 607

[Close]

BLAST of CV190386 vs. TrEMBL
Match: D7KYN1|D7KYN1_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_338526 PE=4 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 5.500e-25
Identity = 56/86 (65.12%), Postives = 69/86 (80.23%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEEADT 287
            +VMT P+TTPCAHNFCKAC+   F G+T  RER S GGRTLR+QKNVMKCP C  DI+EF++NPQVNRE+  VIE L+++ EE +T
Sbjct:  523 QVMTNPVTTPCAHNFCKACIVSKFAGKTLMRER-SRGGRTLRAQKNVMKCPCCPTDIAEFIQNPQVNREVAEVIEKLKNQEEEDNT 607

[Close]

BLAST of CV190386 vs. TrEMBL
Match: Q9FW25|Q9FW25_ORYSJ (Os05g0102600 protein OS=Oryza sativa subsp. japonica GN=P0036D10.17 PE=4 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.498e-22
Identity = 56/87 (64.37%), Postives = 65/87 (74.71%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKA-EEADT 287
            +VM  P+TTPCAHNFCK CL G +  Q+  RER S GGRTLR+QK V KCPSC  DI +FL NPQ+NRE+M +IE LQ KA EE DT
Sbjct:  510 QVMKEPLTTPCAHNFCKLCLVGTYGSQSSMRER-SRGGRTLRAQKIVKKCPSCPTDICDFLENPQINREMMDLIESLQRKAVEEGDT 595

[Close]

BLAST of CV190386 vs. Vitis vinifera peptide
Match: GSVIVT01001091001 (assembled CDS)

HSP 1 Score: 127.102 bits (318), Expect = 5.739e-30
Identity = 60/83 (72.29%), Postives = 69/83 (83.13%), Query Frame = 3

Query:   33 VMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEEA 281
            VM LP+TTPCAHNFCK+CLEGAF+GQTF R+R   G RTLR+QKNVMKCPSC  DIS+FL+NPQVNRELM VI  LQ +  E+
Sbjct:  518 VMVLPLTTPCAHNFCKSCLEGAFSGQTFVRQRTCEGRRTLRAQKNVMKCPSCPNDISDFLQNPQVNRELMDVIVSLQRRTVES 600

[Close]

BLAST of CV190386 vs. TAIR peptide
Match: AT1G57820.2 (| Symbols: VIM1, ORTH2 | Zinc finger (C3HC4-type RING finger) family protein | chr1:21414342-21417902 REVERSE LENGTH=642)

HSP 1 Score: 118.242 bits (295), Expect = 3.886e-27
Identity = 58/86 (67.44%), Postives = 68/86 (79.07%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEEADT 287
            +V+TLP+TTPCAHNFCKACLE  F G+T  RER S GGRTLRS+KNV+ CP C  DIS+FL+NPQVNRE+  VIE L  K +E DT
Sbjct:  520 QVLTLPVTTPCAHNFCKACLEAKFAGKTLVRER-STGGRTLRSRKNVLNCPCCPTDISDFLQNPQVNREVAEVIEKL--KTQEEDT 602

[Close]

BLAST of CV190386 vs. TAIR peptide
Match: AT1G57820.1 (| Symbols: VIM1, ORTH2 | Zinc finger (C3HC4-type RING finger) family protein | chr1:21414342-21417902 REVERSE LENGTH=645)

HSP 1 Score: 118.242 bits (295), Expect = 3.886e-27
Identity = 58/86 (67.44%), Postives = 68/86 (79.07%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEEADT 287
            +V+TLP+TTPCAHNFCKACLE  F G+T  RER S GGRTLRS+KNV+ CP C  DIS+FL+NPQVNRE+  VIE L  K +E DT
Sbjct:  523 QVLTLPVTTPCAHNFCKACLEAKFAGKTLVRER-STGGRTLRSRKNVLNCPCCPTDISDFLQNPQVNREVAEVIEKL--KTQEEDT 605

[Close]

BLAST of CV190386 vs. TAIR peptide
Match: AT5G39550.1 (| Symbols: VIM3, ORTH1 | Zinc finger (C3HC4-type RING finger) family protein | chr5:15837408-15840503 REVERSE LENGTH=617)

HSP 1 Score: 117.857 bits (294), Expect = 5.076e-27
Identity = 54/85 (63.53%), Postives = 67/85 (78.82%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEEAD 284
            +V++LP+TTPCAHNFCKACLE  F G T  RER + GGR LR++KN+M CP CT D+SEFL+NPQVNRE+M +IE  +   EEAD
Sbjct:  500 EVLSLPVTTPCAHNFCKACLEAKFAGITQLRERSN-GGRKLRAKKNIMTCPCCTTDLSEFLQNPQVNREMMEIIENFKKSEEEAD 583

[Close]

BLAST of CV190386 vs. TAIR peptide
Match: AT1G57800.1 (| Symbols: VIM5, ORTH3 | zinc finger (C3HC4-type RING finger) family protein | chr1:21408747-21412283 REVERSE LENGTH=660)

HSP 1 Score: 114.775 bits (286), Expect = 4.297e-26
Identity = 56/83 (67.47%), Postives = 64/83 (77.11%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEE 278
            KVMT P+TTPCAHNFCKACLE  F G    RER S GGR LRSQK+VMKCP C  DI+EF++NPQVNRE+  VIE L+ + EE
Sbjct:  533 KVMTNPVTTPCAHNFCKACLESKFAGTALVRERGS-GGRKLRSQKSVMKCPCCPTDIAEFVQNPQVNREVAEVIEKLKKQEEE 614

[Close]

BLAST of CV190386 vs. TAIR peptide
Match: AT1G66050.1 (| Symbols: VIM2, ORTH5 | Zinc finger (C3HC4-type RING finger) family protein | chr1:24589534-24592616 FORWARD LENGTH=623)

HSP 1 Score: 113.235 bits (282), Expect = 1.250e-25
Identity = 52/85 (61.18%), Postives = 66/85 (77.65%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEEAD 284
            KV++LP+TTPCAHNFCKACLE  F G T  R+R + G R LR++KN+M CP CT D+SEFL+NPQVNRE+M +IE  +   EEA+
Sbjct:  503 KVLSLPVTTPCAHNFCKACLEAKFAGITQLRDRSN-GVRKLRAKKNIMTCPCCTTDLSEFLQNPQVNREMMEIIENFKKSEEEAE 586

[Close]

BLAST of CV190386 vs. TAIR peptide
Match: AT1G66040.1 (| Symbols: VIM4, ORTH4 | Zinc finger (C3HC4-type RING finger) family protein | chr1:24583820-24586681 REVERSE LENGTH=622)

HSP 1 Score: 113.235 bits (282), Expect = 1.250e-25
Identity = 52/85 (61.18%), Postives = 66/85 (77.65%), Query Frame = 3

Query:   30 KVMTLPITTPCAHNFCKACLEGAFTGQTFERERKSLGGRTLRSQKNVMKCPSCTLDISEFLRNPQVNRELMVVIEGLQDKAEEAD 284
            KV++LP+TTPCAHNFCKACLE  F G T  R+R + G R LR++KN+M CP CT D+SEFL+NPQVNRE+M +IE  +   EEA+
Sbjct:  503 KVLSLPVTTPCAHNFCKACLEAKFAGITQLRDRSN-GVRKLRAKKNIMTCPCCTTDLSEFLQNPQVNREMMEIIENFKKSEEEAE 586

The following BLAST results are available for this feature:

BLAST of CV190386 vs. DB:swissprot:display
BLAST of CV190386 vs. Populus trichocarpa peptide v2.0
BLAST of CV190386 vs. P. persica 1.0 peptide
BLAST of CV190386 vs. TrEMBL
BLAST of CV190386 vs. Vitis vinifera peptide
BLAST of CV190386 vs. TAIR peptide

BLAST of CV190386 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 5


Match Name	E-value	Identity	Description
ORTH2_ARATH	3.769e-26	67.44	E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidops...	[more]
ORTH1_ARATH	4.922e-26	63.53	E3 ubiquitin-protein ligase ORTHRUS 1 OS=Arabidops...	[more]
ORTH3_ARATH	4.167e-25	67.47	E3 ubiquitin-protein ligase ORTHRUS 3 OS=Arabidops...	[more]
ORTH5_ARATH	1.212e-24	61.18	E3 ubiquitin-protein ligase ORTHRUS 5 OS=Arabidops...	[more]
ORTH4_ARATH	1.212e-24	61.18	Putative E3 ubiquitin-protein ligase ORTHRUS 4 OS=...	[more]

BLAST of CV190386 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
POPTR_0001s12980.1	1.467e-30	75.90		[more]
POPTR_0003s16080.1	1.467e-30	74.70		[more]

BLAST of CV190386 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
ppa015406m	1.602e-23	75.38		[more]

BLAST of CV190386 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
B9RG02\|B9RG02_RICCO	1.827e-28	71.76	Zinc finger protein, putative OS=Ricinus communis ...	[more]
B9GZ20\|B9GZ20_POPTR	1.827e-28	74.70	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9GMU0\|B9GMU0_POPTR	1.827e-28	75.90	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7TFI9\|D7TFI9_VITVI	1.184e-27	72.29	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9SU90\|B9SU90_RICCO	1.309e-26	54.31	Zinc finger protein, putative OS=Ricinus communis ...	[more]
D7KT43\|D7KT43_ARALY	6.497e-26	65.12	Predicted protein OS=Arabidopsis lyrata subsp. lyr...	[more]
D7KT42\|D7KT42_ARALY	6.497e-26	65.12	Predicted protein OS=Arabidopsis lyrata subsp. lyr...	[more]
D7KYM7\|D7KYM7_ARALY	1.890e-25	67.42	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
D7KYN1\|D7KYN1_ARALY	5.500e-25	65.12	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q9FW25\|Q9FW25_ORYSJ	1.498e-22	64.37	Os05g0102600 protein OS=Oryza sativa subsp. japoni...	[more]

BLAST of CV190386 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1


Match Name	E-value	Identity	Description
GSVIVT01001091001	5.739e-30	72.29	assembled CDS	[more]

BLAST of CV190386 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 6


Match Name	E-value	Identity	Description
AT1G57820.2	3.886e-27	67.44	\| Symbols: VIM1, ORTH2 \| Zinc finger (C3HC4-type R...	[more]
AT1G57820.1	3.886e-27	67.44	\| Symbols: VIM1, ORTH2 \| Zinc finger (C3HC4-type R...	[more]
AT5G39550.1	5.076e-27	63.53	\| Symbols: VIM3, ORTH1 \| Zinc finger (C3HC4-type R...	[more]
AT1G57800.1	4.297e-26	67.47	\| Symbols: VIM5, ORTH3 \| zinc finger (C3HC4-type R...	[more]
AT1G66050.1	1.250e-25	61.18	\| Symbols: VIM2, ORTH5 \| Zinc finger (C3HC4-type R...	[more]
AT1G66040.1	1.250e-25	61.18	\| Symbols: VIM4, ORTH4 \| Zinc finger (C3HC4-type R...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	no description	coord: 11..102 score: 1.9
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 20..29 score
None	No IPR available	PANTHER	PTHR14140	NUCLEAR PROTEIN 95	coord: 10..107 score: 2.2
None	No IPR available	PANTHER	PTHR14140:SF1	RING ZINC FINGER PROTEIN	coord: 10..107 score: 2.2
None	No IPR available	SEG	seg	seg	coord: 96..108 score
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 15..88 score: 4
None	No IPR available	SEG	seg	seg	coord: 73..88 score: NAcoord: 108..123 score
None	No IPR available	SEG	seg	seg	coord: 22..33 score: NAcoord: 53..77 score

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV190386 ID=CV190386; Name=CV190386; organism=Vaccinium corymbosum; type=EST; length=663bp
GGCAGGACTCTCCTGCCTTCTCTAGTGGAAAAGTGATGACTCTGCCTATC
ACAACACCCTGTGCTCACAACTTCTGCAAAGCTTGTTTGGAAGGTGCCTT
TACTGGGCAAACTTTTGAGAGGGAGCGAAAATCTCTGGGTGGACGCACCC
TTCGCTCCCAAAAGAATGTCATGAAGTGCCCTTCTTGCACGCTTGACATT
TCTGAATTCCTTAGAAATCCTCAGGTGAATCGGGAACTCATGGTGGTAAT
TGAAGGGCTCCAAGATAAGGCGGAAGAAGCGGACACTGTTGAGGTGTCTG
TTGAAAAAGAATCAGATTCCTCATCTGGGACATGTAAGCGCATGAGACTT
GATTCCATCGATGATGCTGGGAGAAAAAACGTAGGCGCTGAAGTAGCCGT
GGACGAAGGGATTGATTCGCCTTCAAGTCCTCTACATGTTCGATCAGACG
AGGATATCCAGTGACTCGTCTTTCAGTTGAAATAATTACGTTTTGTTTGG
ATCTTTGATTTGGAGAGGGAATCACTGAGGAAAGATTTGTGAAGCGAATT
TCTTTCTCAACCGGAAATTTCTCCACAAATCCAAGATCCAACCACAGCGT
AATGAATTTCGTAATCTTGAGTCTCATCTCCTAGCATTGCATTTCTATTT
TGGACTTATGACA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
noIPR	unintegrated