DW043442

EST Overview
NameDW043442
Unique NameDW043442
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length565
Libraries
Library NameType
LIBEST_018810 Subtracted cDNA library of Vaccinium corymbosumcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Homology
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BLAST of DW043442 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0002s05910.1 ()

HSP 1 Score: 52.373 bits (124), Expect = 2.242e-7
Identity = 29/55 (52.73%), Postives = 32/55 (58.18%), Query Frame = -3 
Query:  372 LSFQKEETSR*QAYLNVVSQRNDSVFFATIGAXXXXXXXXXXXXXXFTGYVLLFP 536
            L+  ++   R QAYLN VSQRNDSVFFATIGA               TGYV LFP
Sbjct:  132 LTVSQKRNIRRQAYLNQVSQRNDSVFFATIGAFIILPPIIILGIAILTGYVQLFP 186
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BLAST of DW043442 vs. P. persica 1.0 peptide
Match: ppa011966m ()

HSP 1 Score: 50.447 bits (119), Expect = 6.047e-7
Identity = 27/56 (48.21%), Postives = 33/56 (58.93%), Query Frame = -3 
Query:  372 KLSFQKEETSR*QAYLNVVSQRNDSVFFATIGAXXXXXXXXXXXXXXFTGYVLLFP 539
            +L+  ++   + QAYLN VS+RNDSVFFATIGA               TGYV LFP
Sbjct:  134 ELTISQKRNIKRQAYLNEVSKRNDSVFFATIGAFVLVPPLVILGIAILTGYVQLFP 189
[Close]
BLAST of DW043442 vs. Vitis vinifera peptide
Match: GSVIVT01020847001 (assembled CDS)

HSP 1 Score: 55.8398 bits (133), Expect = 1.234e-8
Identity = 34/60 (56.67%), Postives = 36/60 (60.00%), Query Frame = -3 
Query:  372 PRFLKLSFQKEETSR*QAYLNVVSQRNDSVFFATIGAXXXXXXXXXXXXXXFTGYVLLFP 551
            P+FL +S QK    R QAYLN VSQRNDSVFFATIGA               TGYV LFP
Sbjct:  133 PKFLTIS-QKRNIKR-QAYLNEVSQRNDSVFFATIGAFVILPPIIILGIAIITGYVQLFP 190
[Close]
BLAST of DW043442 vs. TAIR peptide
Match: AT2G42975.1 (| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; Has 32 Blast hits to 32 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:17873998-17874820 FORWARD LENGTH=187)

HSP 1 Score: 54.6842 bits (130), Expect = 3.983e-8
Identity = 33/60 (55.00%), Postives = 36/60 (60.00%), Query Frame = -3 
Query:  372 PRFLKLSFQKEETSR*QAYLNVVSQRNDSVFFATIGAXXXXXXXXXXXXXXFTGYVLLFP 551
            P+FL +S QK    R Q+YLN VSQRNDSVFFATIGA               TGYV LFP
Sbjct:  130 PKFLTIS-QKRNIKR-QSYLNEVSQRNDSVFFATIGAFVILPPLVILAIAILTGYVQLFP 187
The following BLAST results are available for this feature:
BLAST of DW043442 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
POPTR_0002s05910.12.242e-752.73[more]
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BLAST of DW043442 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
ppa011966m6.047e-748.21[more]
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BLAST of DW043442 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010208470011.234e-856.67assembled CDS[more]
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BLAST of DW043442 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G42975.13.983e-855.00| Symbols: | unknown protein; FUNCTIONS IN: molec... [more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 4..14
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>DW043442 ID=DW043442; Name=DW043442; organism=Vaccinium corymbosum; type=EST; length=565bp
ACAGCCCTTATACAGAGCGGCCGCCCAGGGCAGGTACTTATACATATAAA
TGTAAACAAATGCAAAATTACAGAGAAAAACCTCAACAGGCAACCCCGAG
CCCATAGGGATCCAGGGGAAAGGTTGGTCACACATGCAACTCATATAGAA
AGTGATTTAACAGAACGAAACAAGTAGATTAGTCAATAAATATGTTAAAA
TACTAGTAAAATTACGTGTAGCTGTATAAAATGGAATGTACCTGGCCTAC
GTATCTAAGGGAGGTCTAGGAAACCCTAGAGCAGATGCAGTAATAACATG
TAAACAAGTATAATGCTATATAAACAAGTGTGATCGATACCTGTATGAAT
ACTACTGATAGATATAGGTCATGGAAAAAGTAGAACATAACCAGTAAATA
TAGCGATAGCAAGTATGACAAGAGGCGGAAGAATTACAAATGCTCCGATA
GTGGCAAAGAAAACTGAGTCATTCCTCTGGGATACTACATTAAGGTAAGC
CTGTCATCTTGATGTTTCTTCTTTCTGAAAAGATAATTTAAGAAACCTTG
GGAAGTAACTTCTTT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated