DW043561

EST Overview
NameDW043561
Unique NameDW043561
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length560
Libraries
Library NameType
LIBEST_018810 Subtracted cDNA library of Vaccinium corymbosumcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Homology
BLAST of DW043561 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0005s04950.1 ()

HSP 1 Score: 53.5286 bits (127), Expect = 9.954e-8
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1
Query:  199 EDKTT*ADVMEDATEKLPGDKQATSENAEGVISAEMKNKPMM 324
            EDKT  +DV+ DAT KLP DK AT ++AEGV  AEM+N P +
Sbjct:  193 EDKTKLSDVLADATSKLPADKPATRKDAEGVTGAEMRNDPFL 234          
BLAST of DW043561 vs. P. persica 1.0 peptide
Match: ppa020371m ()

HSP 1 Score: 52.373 bits (124), Expect = 1.574e-7
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1
Query:  199 EDKTT*ADVMEDATEKLPGDKQATSENAEGVISAEMKNKPMM 324
            E+KT  AD++ DAT KLP DK AT  +AEGV  AEM+N P +
Sbjct:  200 EEKTKLADILADATSKLPADKPATRRDAEGVTGAEMRNDPFL 241          
BLAST of DW043561 vs. P. persica 1.0 peptide
Match: ppa019572m ()

HSP 1 Score: 50.447 bits (119), Expect = 5.983e-7
Identity = 23/42 (54.76%), Postives = 30/42 (71.43%), Query Frame = 1
Query:  199 EDKTT*ADVMEDATEKLPGDKQATSENAEGVISAEMKNKPMM 324
            +DK    DV+  ATEKLP DK AT ++AEG+ SAE++N P M
Sbjct:  178 QDKIKLTDVLSGATEKLPADKAATRQDAEGIASAELRNNPEM 219          
BLAST of DW043561 vs. Vitis vinifera peptide
Match: GSVIVT01021881001 (assembled CDS)

HSP 1 Score: 52.7582 bits (125), Expect = 1.033e-7
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:  199 EDKTT*ADVMEDATEKLPGDKQATSENAEGVISAEMKNKP 318
            EDKT  ADV+ DA+EKLP DK AT  +AEGV+ AE++N P
Sbjct:  194 EDKTKLADVLTDASEKLPRDKAATRRDAEGVVRAEVRNDP 233          
BLAST of DW043561 vs. Vitis vinifera peptide
Match: GSVIVT01001170001 (assembled CDS)

HSP 1 Score: 50.0618 bits (118), Expect = 6.698e-7
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1
Query:  199 EDKTT*ADVMEDATEKLPGDKQATSENAEGVISAEMKNKPMM 324
            E+KT  +D++ DAT KLP DK AT E+AE VI AE++N P M
Sbjct:  196 ENKTKLSDILTDATAKLPDDKPATREDAERVIGAELRNDPNM 237          
BLAST of DW043561 vs. TAIR peptide
Match: AT1G03120.1 (| Symbols: ATRAB28, RAB28 | responsive to abscisic acid 28 | chr1:752271-753140 FORWARD LENGTH=182)

HSP 1 Score: 50.447 bits (119), Expect = 7.431e-7
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1
Query:  193 SAEDKTT*ADVMEDATEKLPGDKQATSENAEGVISAEMKNKPMM 324
            S EDK   AD++ DA E+LPGDK  TSE+AE V+ AE+++   M
Sbjct:  118 SEEDKVNIADILTDAAERLPGDKVVTSEDAEAVVGAELRSSSEM 161          
The following BLAST results are available for this feature:
BLAST of DW043561 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
POPTR_0005s04950.19.954e-859.52[more]
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BLAST of DW043561 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
ppa020371m1.574e-757.14[more]
ppa019572m5.983e-754.76[more]
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BLAST of DW043561 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 2
Match NameE-valueIdentityDescription
GSVIVT010218810011.033e-762.50assembled CDS[more]
GSVIVT010011700016.698e-757.14assembled CDS[more]
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BLAST of DW043561 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G03120.17.431e-752.27| Symbols: ATRAB28, RAB28 | responsive to abscisic... [more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007011Seed maturation proteinPFAMPF04927SMPcoord: 2..55
score: 8.4
NoneNo IPR availableSEGsegsegcoord: 37..51
score
NoneNo IPR availableSEGsegsegcoord: 18..31
score
NoneNo IPR availableSEGsegsegcoord: 29..44
score
NoneNo IPR availableSEGsegsegcoord: 54..68
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>DW043561 ID=DW043561; Name=DW043561; organism=Vaccinium corymbosum; type=EST; length=560bp
CTCCNCTGCCGCCGTCAAAAGAACATAAAAACCCACTAACAACATAAAAA
AGAGAGACTTTAGTACTAAGCANCGAGTTATAAAAACGAATAACGCACCT
ATAACGANCGCGGCCGCACCGGGACNGGTAAACTACACGGGCGGAATTGG
TGCTGCATGCGCAGTCGGCAGCCACACACAATGACAGGTCACTCGGCTGA
GGACAAGACCACATAAGCCGATGTTATGGAGGATGCAACTGAAAAGCTAC
CGGGCGACAAACAAGCGACAAGTGAAAATGCAGAGGGGGTTATTAGTGCC
GAGATGAAGAACAAACCCATGATGGGTGCATATACCGGAGGCGTGGCAGA
TACAGTGGCCGCTGCTGCCAAGCAAAATATGCAGTAAAGCCGTACGGGCC
AGGAAATGATGTAATAAATGGCAGAAAGTTGGGGAATAGAAACTGAAACC
TGCTTAAACATAGTTATTTGCTTTCCCCTATGGGAGGGGTGGCTAGGTTT
TTGGTTTGGGGGNCCCGTCACCCCCAATTACATTTGTTTATGGTTGTTAA
ACCCGGNTTT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
IPR007011LEA_SMP_dom
noIPRunintegrated