HO054820

EST Overview
NameHO054820
Unique NameHO054820
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length319
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL2011-01-18
InterProScan analysis for Vaccinium corymbosum unigene v12011-01-18
Homology
BLAST of HO054820 vs. TrEMBL
Match: Q096D0|Q096D0_STIAU (ATP-dependent DNA helicase PcrA OS=Stigmatella aurantiaca DW4/3-1 GN=STIAU_3791 PE=4 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.471e-16
Identity = 47/98 (47.96%), Postives = 60/98 (61.22%), Query Frame = -3
Query:   24 RHVFVDEMLPESVLITTFTRKAAGELSSRLIDWGLGLAEHFRARAVASGDVASVAWLDGLDITSIRTGTLDSFCQEWLGTTKEVGSPSPVMLEQFAAD 317
            RHV VD +LPE ++ITTFTRKAA E+ +RLI+WG  L E   A      D    A+L  +DI    TGTLDS C+E L   +  G   PV++E FAA+
Sbjct:   56 RHVLVDRVLPERIMITTFTRKAAKEIRTRLIEWGTPLLEALLADRAGPLDADYRAFLRQVDINRFVTGTLDSLCEEALSGARGPGERLPVLVEAFAAN 153          
BLAST of HO054820 vs. TrEMBL
Match: D3E351|D3E351_METRM (ATP-dependent DNA helicase UvrD/REP family OS=Methanobrevibacter ruminantium (strain ATCC 35063 / DSM 1093 / JCM 13430 / M1) GN=mru_1111 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.675e-11
Identity = 38/106 (35.85%), Postives = 62/106 (58.49%), Query Frame = -3
Query:   18 RHVFVDEMLPESVLITTFTRKAAGELSSRLIDWGLGLAEH---FRARAVASGDVASVAWLD---GLDITSIRTGTLDSFCQEWLGTTKEVGSPSPVMLEQFAADFV 317
            + +FVD++ P+ +L TTFT+KAA EL SR++ WG  L +    F    V +G++A  + +D    +D   I  GT+DS   E L   ++ G+  P+++E F A+ V
Sbjct:   57 KFIFVDDVQPKEILATTFTKKAASELLSRILSWGDKLKKKIPVFIMDKVMNGEMADGSVVDKVRKIDFNQINVGTIDSIADELLRVHRDAGTSQPILIEDFVANSV 162          
BLAST of HO054820 vs. TrEMBL
Match: A5UJE0|A5UJE0_METS3 (DNA helicase OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_0113 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.824e-10
Identity = 34/99 (34.34%), Postives = 56/99 (56.57%), Query Frame = -3
Query:   33 RHVFVDEMLPESVLITTFTRKAAGELSSRLIDWGLGLAEHFRARAVASGDVASVAWLD----GLDITSIRTGTLDSFCQEWLGTTKEVGSPSPVMLEQF 317
            +++FVD++ P+ +L TTFTRKAA EL SR++ WG  +  +     V    V  +  +D     +D+  I  GT DS  ++ L   +E G+  P+++E F
Sbjct:   57 KYIFVDDIAPDEILATTFTRKAANELHSRILSWGDQIKNYLLDNIVEDDPVKEMELMDFIEKKIDLNKINIGTTDSVAEDLLRIHREPGTNQPLVIEDF 155          
BLAST of HO054820 vs. TrEMBL
Match: D2ZRJ7|D2ZRJ7_METSM (UvrD/REP helicase family protein OS=Methanobrevibacter smithii DSM 2374 GN=METSMIF1_03481 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.824e-10
Identity = 34/99 (34.34%), Postives = 56/99 (56.57%), Query Frame = -3
Query:   33 RHVFVDEMLPESVLITTFTRKAAGELSSRLIDWGLGLAEHFRARAVASGDVASVAWLD----GLDITSIRTGTLDSFCQEWLGTTKEVGSPSPVMLEQF 317
            +++FVD++ P+ +L TTFTRKAA EL SR++ WG  +  +     V    V  +  +D     +D+  I  GT DS  ++ L   +E G+  P+++E F
Sbjct:   61 KYIFVDDIAPDEILATTFTRKAANELHSRILSWGDQIKNYLLDNIVEDDPVKEMELMDFIEKKIDLNKINIGTTDSVAEDLLRIHREPGTNQPLVIEDF 159          
BLAST of HO054820 vs. TrEMBL
Match: B9AD39|B9AD39_METSM (Putative uncharacterized protein OS=Methanobrevibacter smithii DSM 2375 GN=METSMIALI_00261 PE=4 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.824e-10
Identity = 34/99 (34.34%), Postives = 56/99 (56.57%), Query Frame = -3
Query:   33 RHVFVDEMLPESVLITTFTRKAAGELSSRLIDWGLGLAEHFRARAVASGDVASVAWLD----GLDITSIRTGTLDSFCQEWLGTTKEVGSPSPVMLEQF 317
            +++FVD++ P+ +L TTFTRKAA EL SR++ WG  +  +     V    V  +  +D     +D+  I  GT DS  ++ L   +E G+  P+++E F
Sbjct:   61 KYIFVDDIAPDEILATTFTRKAANELHSRILSWGDQIKNYLLDNIVEDDPVKEMELMDFIEKKIDLNKINIGTTDSVAEDLLRIHREPGTNQPLVIEDF 159          
The following BLAST results are available for this feature:
BLAST of HO054820 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
Q096D0|Q096D0_STIAU6.471e-1647.96ATP-dependent DNA helicase PcrA OS=Stigmatella aur... [more]
D3E351|D3E351_METRM3.675e-1135.85ATP-dependent DNA helicase UvrD/REP family OS=Meth... [more]
A5UJE0|A5UJE0_METS31.824e-1034.34DNA helicase OS=Methanobrevibacter smithii (strain... [more]
D2ZRJ7|D2ZRJ7_METSM1.824e-1034.34UvrD/REP helicase family protein OS=Methanobreviba... [more]
B9AD39|B9AD39_METSM1.824e-1034.34Putative uncharacterized protein OS=Methanobreviba... [more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000212DNA helicase, UvrD/REP typePFAMPF00580UvrD-helicasecoord: 8..79
score: 8.8
NoneNo IPR availableGENE3D3.40.50.300no descriptioncoord: 66..85
score: 2.9

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>HO054820 ID=HO054820; Name=HO054820; organism=Vaccinium corymbosum; type=EST; length=319bp
GNNNACGNTTCGGNGGACACAAAATCAGCAGCGAACTGCTCAAGCATTAC
AGGCGATGGCGAGCCGACTTCTTTGGTCGTTCCAAGCCACTCCTGGCAGA
AGCTATCTAGTGTGCCGGTGCGGATCGAAGTGATGTCTAGTCCATCAAGC
CAGGCGACAGAGGCAACATCACCCGACGCTACAGCTCGAGCTCGAAAATG
CTCAGCGAGCCCAAGTCCCCAATCGATAAGACGACTTGAGAGCTCACCCG
CGGCTTTTCGTGTGAAGGTGGTGATGAGCACGCTCTCAGGTAGCATTTCG
TCGACGAAGACATGCCGGA
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0004003ATP-dependent DNA helicase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Vocabulary: INTERPRO
TermDefinition
IPR000212DNA_helicase_UvrD/REP
noIPRunintegrated