CF810968 | GDV

EST Overview


Name	CF810968
Unique Name	CF810968
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	632

Libraries


Library Name	Type
LIBEST_014530 cDNA cold acclimated Bluecrop library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Swissprot	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide	2011-02-10
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of CF810968 vs. DB:swissprot:display
Match: RNF13_CHICK (E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus GN=RNF13 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 3.850e-9
Identity = 35/93 (37.63%), Postives = 52/93 (55.91%), Query Frame = 2

Query:  263 NETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSDLVAMAGN 541
            N T +F+D+ A F   L   G  G L  + P +AC P++      N++    VLI R  C+F+ KV  AQ AG+KAAI+++    DL++M  N
Sbjct:   43 NGTQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIAPPPLRDNSSTAFIVLIRRLECNFDIKVLNAQRAGYKAAIVHNVDSDDLISMGSN 135

[Close]

BLAST of CF810968 vs. DB:swissprot:display
Match: RNF13_BOVIN (E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN=RNF13 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 6.567e-9
Identity = 34/93 (36.56%), Postives = 52/93 (55.91%), Query Frame = 2

Query:  263 NETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSDLVAMAGN 541
            N + +F+D+ A F   L   G  G L  + P +AC P+       N++    VLI R  C+F++KV  AQ AG+KAAI+++    DL++M  N
Sbjct:   43 NASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPVRDNSSGTFIVLIRRLDCNFDEKVLNAQRAGYKAAIVHNVDSDDLISMGSN 135

[Close]

BLAST of CF810968 vs. DB:swissprot:display
Match: RNF13_RAT (E3 ubiquitin-protein ligase RNF13 OS=Rattus norvegicus GN=Rnf13 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.120e-8
Identity = 35/93 (37.63%), Postives = 51/93 (54.84%), Query Frame = 2

Query:  263 NETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSDLVAMAGN 541
            N + +FED+ A F   L   G  G L  + P +AC P+       N++    VLI R  C+F+ KV  AQ AG+KAAI+++    DL++M  N
Sbjct:   43 NASQTFEDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAIVHNVDSDDLISMGSN 135

[Close]

BLAST of CF810968 vs. DB:swissprot:display
Match: RNF13_MOUSE (E3 ubiquitin-protein ligase RNF13 OS=Mus musculus GN=Rnf13 PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.120e-8
Identity = 35/93 (37.63%), Postives = 51/93 (54.84%), Query Frame = 2

Query:  263 NETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSDLVAMAGN 541
            N + +FED+ A F   L   G  G L  + P +AC P+       N++    VLI R  C+F+ KV  AQ AG+KAAI+++    DL++M  N
Sbjct:   43 NASQTFEDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPLKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAIVHNVDSDDLISMGSN 135

[Close]

BLAST of CF810968 vs. DB:swissprot:display
Match: ZNRF4_HUMAN (Zinc/RING finger protein 4 OS=Homo sapiens GN=ZNRF4 PE=2 SV=3)

HSP 1 Score: 58.9214 bits (141), Expect = 2.496e-8
Identity = 42/115 (36.52%), Postives = 61/115 (53.04%), Query Frame = 2

Query:  188 RKVLVCSFLSLMACVALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSDLVAM 532
            + +LV S L + A  A+   VL  N+ ++ F D+ A F   L   G  G L    P +AC P+ +     N +    VLI R  C+F+ KV  AQ AGF+AAI+++    DLV+M
Sbjct:   84 KALLVLSLLQVPA-QAVVRAVLEDNSSSVDFADLPALFGVPLAPEGIRGYLMEVKPANACHPI-EAPRLGNRSLGAIVLIRRYDCTFDLKVLNAQRAGFEAAIVHNVHSDDLVSM 196

[Close]

BLAST of CF810968 vs. DB:swissprot:display
Match: RNF13_PONAB (E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii GN=RNF13 PE=2 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.496e-8
Identity = 34/93 (36.56%), Postives = 51/93 (54.84%), Query Frame = 2

Query:  263 NETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSDLVAMAGN 541
            N + +F+D+ A F   L   G  G L  + P +AC P+       N++    VLI R  C+F+ KV  AQ AG+KAAI+++    DL++M  N
Sbjct:   43 NASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAIVHNVDSDDLISMGSN 135

[Close]

BLAST of CF810968 vs. DB:swissprot:display
Match: RNF13_HUMAN (E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens GN=RNF13 PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 2.496e-8
Identity = 34/93 (36.56%), Postives = 51/93 (54.84%), Query Frame = 2

Query:  263 NETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSDLVAMAGN 541
            N + +F+D+ A F   L   G  G L  + P +AC P+       N++    VLI R  C+F+ KV  AQ AG+KAAI+++    DL++M  N
Sbjct:   43 NASQTFDDLPARFGYRLPAEGLKGFLINSKPENACEPIVPPPVKDNSSGTFIVLIRRLDCNFDIKVLNAQRAGYKAAIVHNVDSDDLISMGSN 135

[Close]

BLAST of CF810968 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0013s11590.1 ()

HSP 1 Score: 140.969 bits (354), Expect = 1.860e-35
Identity = 78/134 (58.21%), Postives = 98/134 (73.13%), Query Frame = 2

Query:  191 KVLVCSFLSLMAC--VALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPL-SKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSDLVA---------MAGNSAGXK 556
            K +V   LSL++C  VA  NVVLIGNN T++F DIEANFAPA+KGSGECG L LA+P+DAC+ L +K +  +N++  P+VLI+RGGCSFE KVR+AQ AGFKAAI++DN    LVA         +AGNS G K
Sbjct:    2 KGIVVLLLSLLSCCLVASANVVLIGNNVTMAFNDIEANFAPAIKGSGECGVLSLAEPIDACTDLTNKAEKGLNSS-SPYVLIIRGGCSFEHKVRRAQKAGFKAAIVFDNEEGVLVASKTFSYVKIVAGNSVGVK 134

HSP 2 Score: 26.1794 bits (56), Expect = 1.860e-35
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 3

Query:  573 SKASGXKLPKYAGVTEMEL 629
            SK SG  L KYAG+T +EL
Sbjct:  141 SKKSGETLTKYAGLTGLEL 159

[Close]

BLAST of CF810968 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0019s11210.1 ()

HSP 1 Score: 143.28 bits (360), Expect = 1.178e-34
Identity = 73/113 (64.60%), Postives = 88/113 (77.88%), Query Frame = 2

Query:  197 LVCSFLSLMAC--VALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSDLVA 529
            +V   LSL++C  VA GNV+LIGNN T++F+DIEANFAPA+KGSGECG LYLA+P+DACS L+      +    PFVLI+R GCSFEDKVR+AQ AG+KAAIIYDN    LVA
Sbjct:    4 VVVLLLSLLSCCLVASGNVLLIGNNVTMAFDDIEANFAPAIKGSGECGVLYLAEPIDACSDLTNQAEKGSNCSSPFVLIIREGCSFEDKVRRAQKAGYKAAIIYDNEEGILVA 116

[Close]

BLAST of CF810968 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0005s11320.1 ()

HSP 1 Score: 83.5741 bits (205), Expect = 1.107e-16
Identity = 51/138 (36.96%), Postives = 81/138 (58.70%), Query Frame = 2

Query:  194 VLVCSFLSLMACVALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPL-SKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXS-DLVAMAGNSAGXKYMLYXFQGFGGKTPK 601
            +++  F ++M        VLI    ++ F D+ A  A +L GS  CG+L++A+PLDACSPL ++ +   +     F LIVRG C+FEDK++ AQ+AGF+AAI++D+  + +L+ M  N  G K        + G+  K
Sbjct:    7 LILSLFYAIMIIEGSSATVLI-KPSSIYFPDLPAKSALSLNGSSVCGSLHVANPLDACSPLRNRFEFNESGR---FALIVRGECAFEDKIKNAQSAGFRAAIVFDDKDNRNLIYMMVNPEGIKVHAVFVTKYAGEILK 140

[Close]

BLAST of CF810968 vs. P. persica 1.0 peptide
Match: ppa022081m ()

HSP 1 Score: 113.62 bits (283), Expect = 1.714e-28
Identity = 59/87 (67.82%), Postives = 71/87 (81.61%), Query Frame = 2

Query:  302 APALKGSGECGTLYLADPLDACSPL-SKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSD-LVAMAGNSAGXK 556
            APA+KGSGECG LYLA+P+DACS L +KV+   N +  PFVL++RGGCSFE+KVR+AQ AGFKAAI+YDN     LV+MAGNSAG K
Sbjct:    6 APAIKGSGECGVLYLAEPVDACSTLTNKVEKGTNYS-SPFVLLIRGGCSFEEKVRRAQKAGFKAAIVYDNEDGGVLVSMAGNSAGIK 91

HSP 2 Score: 29.6462 bits (65), Expect = 1.714e-28
Identity = 14/19 (73.68%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  573 SKASGXKLPKYAGVTEMEL 629
            SKASG  L KYAG+T MEL
Sbjct:   98 SKASGEVLKKYAGLTNMEL 116

[Close]

BLAST of CF810968 vs. P. persica 1.0 peptide
Match: ppa015768m ()

HSP 1 Score: 79.337 bits (194), Expect = 1.495e-15
Identity = 44/109 (40.37%), Postives = 60/109 (55.05%), Query Frame = 2

Query:  182 VRRKVLVCSFLSLMACVALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDN 508
            +R+  L    L     V L + +++       F D+ A FA A+  SG CG L ++DPLDACS L             F LIVRG C+F+DKV+ AQ AGF+ AI+YD+
Sbjct:    1 MRQAFLGLCLLVFAHLVQLTSAIVVLKPFAREFSDLPAKFAIAVNSSGICGALLISDPLDACSSLRNGLRPNETDKTRFALIVRGECAFKDKVQNAQNAGFRGAIVYDD 109

[Close]

BLAST of CF810968 vs. TrEMBL
Match: B9IQI2|B9IQI2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1108425 PE=4 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.642e-37
Identity = 83/137 (60.58%), Postives = 99/137 (72.26%), Query Frame = 2

Query:  197 LVCSFLSLMAC--VALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSDLVAMAGNSAGXKYMLYXFQGFGGKTPK 601
            +V   LSL++C  VA GNV+LIGNN T++F+DIEANFAPA+KGSGECG LYLA+P+DACS L+      +    PFVLI+R GCSFEDKVR+AQ AG+KAAIIYDN    LVAMAGNSAG            G+T K
Sbjct:    4 VVVLLLSLLSCCLVASGNVLLIGNNVTMAFDDIEANFAPAIKGSGECGVLYLAEPIDACSDLTNQAEKGSNCSSPFVLIIREGCSFEDKVRRAQKAGYKAAIIYDNEEGILVAMAGNSAGVTIPAVFVSKTSGETLK 140

[Close]

BLAST of CF810968 vs. TrEMBL
Match: D7SRI8|D7SRI8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_75.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00034782001 PE=4 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.396e-36
Identity = 79/113 (69.91%), Postives = 86/113 (76.11%), Query Frame = 2

Query:  221 MACVALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSD-LVAMAGNSAGXK 556
            MA VA  NVVLIGNN TLSF+DI+ANFA  +KGSGECG LY+A+PLDACSPL+     V     PFVLIVRGGC FEDKVR AQ AGF AAI+YDN     LVAMAGNSAG K
Sbjct:    1 MASVAFANVVLIGNNVTLSFDDIQANFAKPVKGSGECGILYVAEPLDACSPLTNAVEKVEGASSPFVLIVRGGCGFEDKVRNAQKAGFAAAIVYDNEDGGVLVAMAGNSAGIK 113

HSP 2 Score: 24.6386 bits (52), Expect = 1.396e-36
Identity = 12/19 (63.16%), Postives = 13/19 (68.42%), Query Frame = 3

Query:  573 SKASGXKLPKYAGVTEMEL 629
            SKASG  L  YAG  +MEL
Sbjct:  120 SKASGMVLQTYAGSPDMEL 138

[Close]

BLAST of CF810968 vs. TrEMBL
Match: A5BE59|A5BE59_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_014240 PE=4 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.818e-35
Identity = 74/117 (63.25%), Postives = 88/117 (75.21%), Query Frame = 2

Query:  194 VLVCSFLSLMACVALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSDLVAMAGNS 544
            +L C+FL+LMA VA  NVVLIGNN TLSF+DI+ANFA  +KGSGECG LY+A+PLDACSPL+     V     PFVLIVRGGC FEDKVR AQ AGF AAI+YDN    ++  +G +
Sbjct:    8 LLFCAFLNLMASVAFANVVLIGNNVTLSFDDIQANFAKPVKGSGECGILYVAEPLDACSPLTNAVEKVEGASSPFVLIVRGGCGFEDKVRNAQKAGFAAAIVYDNEDGGVLVASGKA 124

[Close]

BLAST of CF810968 vs. TrEMBL
Match: B9T6K7|B9T6K7_RICCO (Zinc finger protein, putative OS=Ricinus communis GN=RCOM_0261670 PE=4 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.025e-35
Identity = 80/138 (57.97%), Postives = 97/138 (70.29%), Query Frame = 2

Query:  194 VLVCSFLSLMACVALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPL-SKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSD-LVAMAGNSAGXKYMLYXFQGFGGKTPK 601
            V++  +LS    + L NVVLIG N TLSF+D+EA FAPA+K SGECG LYLA+P+DACS L +KV    +    PFVL++RGGCSFEDKVR+AQ AGFKAAI+YDN     LV+MAGNSAG K          G+T K
Sbjct:    9 VILLFYLSACCSMTLANVVLIGRNVTLSFDDVEATFAPAVKSSGECGQLYLAEPVDACSELTNKVVKPTSNVTSPFVLVIRGGCSFEDKVRRAQRAGFKAAIVYDNEDDGVLVSMAGNSAGIKIHAVFISKSSGETLK 146

[Close]

BLAST of CF810968 vs. TrEMBL
Match: B9NF93|B9NF93_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1120040 PE=4 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.286e-33
Identity = 78/134 (58.21%), Postives = 98/134 (73.13%), Query Frame = 2

Query:  191 KVLVCSFLSLMAC--VALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPL-SKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSDLVA---------MAGNSAGXK 556
            K +V   LSL++C  VA  NVVLIGNN T++F DIEANFAPA+KGSGECG L LA+P+DAC+ L +K +  +N++  P+VLI+RGGCSFE KVR+AQ AGFKAAI++DN    LVA         +AGNS G K
Sbjct:    2 KGIVVLLLSLLSCCLVASANVVLIGNNVTMAFNDIEANFAPAIKGSGECGVLSLAEPIDACTDLTNKAEKGLNSS-SPYVLIIRGGCSFEHKVRRAQKAGFKAAIVFDNEEGVLVASKTFSYVKIVAGNSVGVK 134

HSP 2 Score: 26.1794 bits (56), Expect = 2.286e-33
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 3

Query:  573 SKASGXKLPKYAGVTEMEL 629
            SK SG  L KYAG+T +EL
Sbjct:  141 SKKSGETLTKYAGLTGLEL 159

[Close]

BLAST of CF810968 vs. TrEMBL
Match: Q8VZ14|Q8VZ14_ARATH (Putative uncharacterized protein At1g71980 OS=Arabidopsis thaliana GN=At1g71980 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.220e-31
Identity = 73/127 (57.48%), Postives = 97/127 (76.38%), Query Frame = 2

Query:  182 VRRKVLVCSFLSLMACVALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPL-SKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNV-XSDLVAMAGNSAGXK 556
            + R +++  ++  ++C+A   V+L+ NN TLSF+DIEANFAP++KG+GE G +Y+A+PLDAC  L +K + + N T P FVLIVRGGCSFE+KVRKAQ AGFKAAIIYDN     L+AMAGNS G +
Sbjct:    1 MNRALVLLLYVCTVSCLASSKVILMRNNITLSFDDIEANFAPSVKGTGEIGVVYVAEPLDACQNLMNKPEQSSNETSP-FVLIVRGGCSFEEKVRKAQRAGFKAAIIYDNEDRGTLIAMAGNSGGIR 126

[Close]

BLAST of CF810968 vs. TrEMBL
Match: D7KZ84|D7KZ84_ARALY (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_676731 PE=4 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.717e-31
Identity = 73/127 (57.48%), Postives = 97/127 (76.38%), Query Frame = 2

Query:  182 VRRKVLVCSFLSLMACVALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPL-SKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNV-XSDLVAMAGNSAGXK 556
            + R +++  ++  ++C+A   V+L+ NN TLSF+DIEANFAP++KG+GE G +Y+A+PLDAC  L +K + + N T P FVLIVRGGCSFE+KVRKAQ AGFKAAII+DN     L+AMAGNS G K
Sbjct:    1 MNRALVLLLYVYTVSCLASSKVILMRNNITLSFDDIEANFAPSVKGTGEIGLVYVAEPLDACQNLMNKPEQSSNETSP-FVLIVRGGCSFEEKVRKAQRAGFKAAIIFDNEDRGTLIAMAGNSGGIK 126

[Close]

BLAST of CF810968 vs. TrEMBL
Match: C5YB45|C5YB45_SORBI (Putative uncharacterized protein Sb06g034040 OS=Sorghum bicolor GN=Sb06g034040 PE=4 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.004e-30
Identity = 69/122 (56.56%), Postives = 92/122 (75.41%), Query Frame = 2

Query:  188 RKVLVCSFLSLMACVALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSD-LVAMAGNSAG 550
            R + +C+   LMA +   NVVL+GNN TLSF+DIEA+F+P +KGSG  G +Y ++PL+ACSPL+    TVN    PF LI+RGGC+F++KV+ AQ AGFKAAI+YDN  S  LV+MAG+S+G
Sbjct:    5 RFLFLCAMFCLMARLGAANVVLMGNNLTLSFDDIEASFSPGVKGSGVSGVVYASEPLNACSPLT--IKTVNGPPSPFALIIRGGCTFDEKVKNAQDAGFKAAIVYDNKNSGVLVSMAGSSSG 124

[Close]

BLAST of CF810968 vs. TrEMBL
Match: Q9M621|Q9M621_ARATH (ReMembR-H2 protein JR702 (Fragment) OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.491e-29
Identity = 70/118 (59.32%), Postives = 90/118 (76.27%), Query Frame = 2

Query:  209 FLSLMACVALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPL-SKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNV-XSDLVAMAGNSAGXK 556
            ++  ++C+A   V+L+ NN TLSF+DIEAN AP++KG+GE G +Y+A+ LDAC  L +K + + N T P FVLIVRGGCSFE+KVRKAQ AGFKAAIIYDN     L+AMAGNS G +
Sbjct:    6 YVCTVSCLASSKVILMRNNITLSFDDIEANIAPSVKGTGEIGVVYVAEXLDACQNLMNKXEQSSNETSP-FVLIVRGGCSFEEKVRKAQRAGFKAAIIYDNEDRGTLIAMAGNSGGIR 122

[Close]

BLAST of CF810968 vs. TrEMBL
Match: C0HFT2|C0HFT2_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 6.783e-29
Identity = 64/124 (51.61%), Postives = 86/124 (69.35%), Query Frame = 2

Query:  182 VRRKVLVCSFLSLMACVALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSD-LVAMAGNSAG 550
            +R  +++C    LMA +   NVVL+ NN TLSF+D+EA F PA+KGSG  G LY  +P+DACSPL      +  +  PF L++RGGC F+DKVR AQ AGFKAA++YD   +  LV+MAG+S+G
Sbjct:   12 LRSFLMIC----LMAQLGASNVVLMANNTTLSFDDVEAIFTPAVKGSGVNGVLYAVEPMDACSPLK--TKAIGGSVSPFALVIRGGCHFDDKVRNAQNAGFKAAVVYDTEDNGVLVSMAGSSSG 129

HSP 2 Score: 26.9498 bits (58), Expect = 6.783e-29
Identity = 12/19 (63.16%), Postives = 15/19 (78.95%), Query Frame = 3

Query:  573 SKASGXKLPKYAGVTEMEL 629
            SKASG +L KY+G T+ EL
Sbjct:  138 SKASGEELKKYSGQTDAEL 156

[Close]

BLAST of CF810968 vs. Vitis vinifera peptide
Match: GSVIVT01034782001 (assembled CDS)

HSP 1 Score: 153.295 bits (386), Expect = 6.953e-39
Identity = 79/113 (69.91%), Postives = 86/113 (76.11%), Query Frame = 2

Query:  221 MACVALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSD-LVAMAGNSAGXK 556
            MA VA  NVVLIGNN TLSF+DI+ANFA  +KGSGECG LY+A+PLDACSPL+     V     PFVLIVRGGC FEDKVR AQ AGF AAI+YDN     LVAMAGNSAG K
Sbjct:    1 MASVAFANVVLIGNNVTLSFDDIQANFAKPVKGSGECGILYVAEPLDACSPLTNAVEKVEGASSPFVLIVRGGCGFEDKVRNAQKAGFAAAIVYDNEDGGVLVAMAGNSAGIK 113

HSP 2 Score: 24.6386 bits (52), Expect = 6.953e-39
Identity = 12/19 (63.16%), Postives = 13/19 (68.42%), Query Frame = 3

Query:  573 SKASGXKLPKYAGVTEMEL 629
            SKASG  L  YAG  +MEL
Sbjct:  120 SKASGMVLQTYAGSPDMEL 138

[Close]

BLAST of CF810968 vs. Vitis vinifera peptide
Match: GSVIVT01018761001 (assembled CDS)

HSP 1 Score: 87.4261 bits (215), Expect = 4.695e-18
Identity = 50/111 (45.05%), Postives = 64/111 (57.66%), Query Frame = 2

Query:  275 SFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDN-VXSDLVAMAGNSAGXKYMLYXFQGFGGKTPKV 604
            SF D  A FA ++  +G CG L+LADPL+ACS L     +       F LI+RG C+FEDKVR AQ AGF A I+YD+    +LV+M GNS G            G+T K+
Sbjct:   93 SFIDAPARFAVSVNSTGICGALHLADPLEACSSLLNRFRSQEIDTIKFALIIRGKCAFEDKVRNAQDAGFHAVIVYDDRDKGNLVSMIGNSQGIWVPAVFVSKAAGETLKI 203

[Close]

BLAST of CF810968 vs. TAIR peptide
Match: AT1G71980.1 (| Symbols: | Protease-associated (PA) RING/U-box zinc finger family protein | chr1:27098250-27099881 FORWARD LENGTH=448)

HSP 1 Score: 140.198 bits (352), Expect = 8.780e-34
Identity = 73/127 (57.48%), Postives = 97/127 (76.38%), Query Frame = 2

Query:  182 VRRKVLVCSFLSLMACVALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPL-SKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNV-XSDLVAMAGNSAGXK 556
            + R +++  ++  ++C+A   V+L+ NN TLSF+DIEANFAP++KG+GE G +Y+A+PLDAC  L +K + + N T P FVLIVRGGCSFE+KVRKAQ AGFKAAIIYDN     L+AMAGNS G +
Sbjct:    1 MNRALVLLLYVCTVSCLASSKVILMRNNITLSFDDIEANFAPSVKGTGEIGVVYVAEPLDACQNLMNKPEQSSNETSP-FVLIVRGGCSFEEKVRKAQRAGFKAAIIYDNEDRGTLIAMAGNSGGIR 126

[Close]

BLAST of CF810968 vs. TAIR peptide
Match: AT4G09560.1 (| Symbols: | Protease-associated (PA) RING/U-box zinc finger family protein | chr4:6041652-6043681 REVERSE LENGTH=448)

HSP 1 Score: 124.02 bits (310), Expect = 1.502e-29
Identity = 65/127 (51.18%), Postives = 89/127 (70.08%), Query Frame = 2

Query:  179 MVRRKVLVCSFLSLMACVALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNAT--CPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYD-NVXSDLVAMAGNSAG 550
            M+R  +++ S L L++ +    V+LIGN+ +LSF+D+EA F P +K S + G LY+A+PLDACS L    +  N T   PP+VLI+RGGCSFEDK+R AQ AG+KAAI+YD      LV+MAGN +G
Sbjct:    1 MIRSSIVILSLL-LISHLVSAKVLLIGNSTSLSFDDVEATFTPMIKRSDQGGVLYVAEPLDACSDLVNTVNVKNGTTVSPPYVLIIRGGCSFEDKIRNAQKAGYKAAIVYDYEDFGFLVSMAGNPSG 126

HSP 2 Score: 23.0978 bits (48), Expect = 1.502e-29
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 3

Query:  573 SKASGXKLPKYAGVTEMEL 629
            SKA+G  L +YAG T+ E+
Sbjct:  135 SKATGEVLKEYAGRTDFEV 153

[Close]

BLAST of CF810968 vs. TAIR peptide
Match: AT1G35630.1 (| Symbols: | Protease-associated (PA) RING/U-box zinc finger family protein | chr1:13163041-13164484 REVERSE LENGTH=318)

HSP 1 Score: 118.242 bits (295), Expect = 3.573e-27
Identity = 62/113 (54.87%), Postives = 80/113 (70.80%), Query Frame = 2

Query:  218 LMAC-VALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIY-DNVXSDLVAMAGNSAG 550
            L+ C +A   VVLIG N  LSF+D+EA F P ++ SGECG LY+A+PL+ACS ++ +    +     +VLIV GGCSFE+KVRKAQ AG+KAAI+Y D     LV MAGNS+G
Sbjct:   12 LVICKLASAKVVLIGKNTILSFDDVEATFTPIVRNSGECGILYVAEPLEACSDITNMAEKRSKYRSSYVLIVLGGCSFEEKVRKAQKAGYKAAIVYNDGYDELLVPMAGNSSG 124

[Close]

BLAST of CF810968 vs. TAIR peptide
Match: AT1G22670.1 (| Symbols: | Protease-associated (PA) RING/U-box zinc finger family protein | chr1:8021854-8023516 REVERSE LENGTH=422)

HSP 1 Score: 98.5969 bits (244), Expect = 6.931e-22
Identity = 55/110 (50.00%), Postives = 73/110 (66.36%), Query Frame = 2

Query:  230 VALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPLSKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXSD-LVAMAGNSAGXK 556
            V  G V+L+ +N T SF D+EA+F+P++  + E G +Y+A+PL+AC  L            P VLI+RGGCSFE KVR AQ +GFKAAI+YDNV  + L AM G+S G K
Sbjct:   20 VDAGQVILVDSNITRSFVDMEADFSPSVT-TVETGVVYVAEPLNACRNLRNKPEQSPYGTSPLVLIIRGGCSFEYKVRNAQRSGFKAAIVYDNVDRNFLSAMGGDSDGIK 128

HSP 2 Score: 22.7126 bits (47), Expect = 6.931e-22
Identity = 10/18 (55.56%), Postives = 12/18 (66.67%), Query Frame = 3

Query:  576 KASGXKLPKYAGVTEMEL 629
            K +G  L KYAG  EME+
Sbjct:  136 KRAGEMLKKYAGSEEMEV 153

[Close]

BLAST of CF810968 vs. TAIR peptide
Match: AT5G66160.1 (| Symbols: ATRMR1, RMR1 | receptor homology region transmembrane domain ring H2 motif protein 1 | chr5:26445198-26446878 FORWARD LENGTH=310)

HSP 1 Score: 92.4337 bits (228), Expect = 2.099e-19
Identity = 52/119 (43.70%), Postives = 73/119 (61.34%), Query Frame = 2

Query:  194 VLVCSFLSLMACVALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPL--SKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXS-DLVAMAGN 541
            ++   FLS +  V+L  VVL  N+ + SF D+ A F  ++  +G CG LY+ADPLD CSPL  +   +        F LI+RG CSFEDK+  AQ +GF+A I+YDN+ + DL+ M  N
Sbjct:   10 LVAAPFLSSLLRVSLATVVL--NSISASFADLPAKFDGSVTKNGICGALYVADPLDGCSPLLHAAASNWTQHRTTKFALIIRGECSFEDKLLNAQNSGFQAVIVYDNIDNEDLIVMKVN 126

[Close]

BLAST of CF810968 vs. TAIR peptide
Match: AT5G66160.2 (| Symbols: RMR1 | receptor homology region transmembrane domain ring H2 motif protein 1 | chr5:26445198-26446722 FORWARD LENGTH=290)

HSP 1 Score: 92.4337 bits (228), Expect = 2.099e-19
Identity = 52/119 (43.70%), Postives = 73/119 (61.34%), Query Frame = 2

Query:  194 VLVCSFLSLMACVALGNVVLIGNNETLSFEDIEANFAPALKGSGECGTLYLADPLDACSPL--SKVDSTVNATCPPFVLIVRGGCSFEDKVRKAQAAGFKAAIIYDNVXS-DLVAMAGN 541
            ++   FLS +  V+L  VVL  N+ + SF D+ A F  ++  +G CG LY+ADPLD CSPL  +   +        F LI+RG CSFEDK+  AQ +GF+A I+YDN+ + DL+ M  N
Sbjct:   10 LVAAPFLSSLLRVSLATVVL--NSISASFADLPAKFDGSVTKNGICGALYVADPLDGCSPLLHAAASNWTQHRTTKFALIIRGECSFEDKLLNAQNSGFQAVIVYDNIDNEDLIVMKVN 126

The following BLAST results are available for this feature:

BLAST of CF810968 vs. DB:swissprot:display
BLAST of CF810968 vs. Populus trichocarpa peptide v2.0
BLAST of CF810968 vs. P. persica 1.0 peptide
BLAST of CF810968 vs. TrEMBL
BLAST of CF810968 vs. Vitis vinifera peptide
BLAST of CF810968 vs. TAIR peptide

BLAST of CF810968 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 7


Match Name	E-value	Identity	Description
RNF13_CHICK	3.850e-9	37.63	E3 ubiquitin-protein ligase RNF13 OS=Gallus gallus...	[more]
RNF13_BOVIN	6.567e-9	36.56	E3 ubiquitin-protein ligase RNF13 OS=Bos taurus GN...	[more]
RNF13_RAT	1.120e-8	37.63	E3 ubiquitin-protein ligase RNF13 OS=Rattus norveg...	[more]
RNF13_MOUSE	1.120e-8	37.63	E3 ubiquitin-protein ligase RNF13 OS=Mus musculus ...	[more]
ZNRF4_HUMAN	2.496e-8	36.52	Zinc/RING finger protein 4 OS=Homo sapiens GN=ZNRF...	[more]
RNF13_PONAB	2.496e-8	36.56	E3 ubiquitin-protein ligase RNF13 OS=Pongo abelii ...	[more]
RNF13_HUMAN	2.496e-8	36.56	E3 ubiquitin-protein ligase RNF13 OS=Homo sapiens ...	[more]

BLAST of CF810968 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 3


Match Name	E-value	Identity
POPTR_0013s11590.1	1.860e-35	58.21	[more]
POPTR_0019s11210.1	1.178e-34	64.60	[more]
POPTR_0005s11320.1	1.107e-16	36.96	[more]

BLAST of CF810968 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
ppa022081m	1.714e-28	67.82		[more]
ppa015768m	1.495e-15	40.37		[more]

BLAST of CF810968 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
B9IQI2\|B9IQI2_POPTR	9.642e-37	60.58	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7SRI8\|D7SRI8_VITVI	1.396e-36	69.91	Whole genome shotgun sequence of line PN40024, sca...	[more]
A5BE59\|A5BE59_VITVI	1.818e-35	63.25	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9T6K7\|B9T6K7_RICCO	9.025e-35	57.97	Zinc finger protein, putative OS=Ricinus communis ...	[more]
B9NF93\|B9NF93_POPTR	2.286e-33	58.21	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q8VZ14\|Q8VZ14_ARATH	1.220e-31	57.48	Putative uncharacterized protein At1g71980 OS=Arab...	[more]
D7KZ84\|D7KZ84_ARALY	2.717e-31	57.48	Predicted protein OS=Arabidopsis lyrata subsp. lyr...	[more]
C5YB45\|C5YB45_SORBI	3.004e-30	56.56	Putative uncharacterized protein Sb06g034040 OS=So...	[more]
Q9M621\|Q9M621_ARATH	1.491e-29	59.32	ReMembR-H2 protein JR702 (Fragment) OS=Arabidopsis...	[more]
C0HFT2\|C0HFT2_MAIZE	6.783e-29	51.61	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]

BLAST of CF810968 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 2


Match Name	E-value	Identity	Description
GSVIVT01034782001	6.953e-39	69.91	assembled CDS	[more]
GSVIVT01018761001	4.695e-18	45.05	assembled CDS	[more]

BLAST of CF810968 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 6


Match Name	E-value	Identity	Description
AT1G71980.1	8.780e-34	57.48	\| Symbols: \| Protease-associated (PA) RING/U-box ...	[more]
AT4G09560.1	1.502e-29	51.18	\| Symbols: \| Protease-associated (PA) RING/U-box ...	[more]
AT1G35630.1	3.573e-27	54.87	\| Symbols: \| Protease-associated (PA) RING/U-box ...	[more]
AT1G22670.1	6.931e-22	50.00	\| Symbols: \| Protease-associated (PA) RING/U-box ...	[more]
AT5G66160.1	2.099e-19	43.70	\| Symbols: ATRMR1, RMR1 \| receptor homology region...	[more]
AT5G66160.2	2.099e-19	43.70	\| Symbols: RMR1 \| receptor homology region transme...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003137	Protease-associated domain, PA	PFAM	PF02225	PA	coord: 81..134 score: 1.5
None	No IPR available	GENE3D	3.50.30.30	no description	coord: 102..138 score: 9.1
None	No IPR available	PANTHER	PTHR22765	RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING	coord: 10..145 score: 2.8
None	No IPR available	PANTHER	PTHR22765:SF1	SPERIZIN, RING ZINC FINGER PROTEIN 4	coord: 10..145 score: 2.8
None	No IPR available	SUPERFAMILY	52025	PA domain	coord: 102..135 score: 5.4

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF810968 ID=CF810968; Name=CF810968; organism=Vaccinium corymbosum; type=EST; length=632bp
GAAACGCTTCAAAATCTCCCAATCACGCGCCGAGACGGAAGAGGGCATCA
AATTCGAATCCAAGACATGGAAGCTGATGTTTCCATTCTCAAAAACCCTA
ACTTGCTCTCTCTAAATTAGACATCTGTATTTTCTCGTGTGGTTGTTTTG
TATTTGGTATTGTCGGATTGAATCAGAGATGGTGAGGCGTAAGGTGCTGG
TCTGCAGTTTTCTCTCTTTGATGGCTTGTGTGGCTCTTGGCAACGTGGTA
TTGATTGGCAACAACGAAACCTTGTCGTTTGAGGACATCGAAGCTAATTT
TGCTCCTGCATTGAAAGGGTCTGGGGAATGTGGCACATTGTATTTAGCAG
ATCCTTTGGATGCATGCTCGCCTTTAAGCAAGGTTGATTCAACTGTTAAT
GCCACTTGTCCGCCATTTGTATTGATTGTTAGAGGAGGATGTAGCTTTGA
GGATAAAGTGAGAAAAGCGCAAGCTGCTGGTTTCAAAGCAGCCATTATCT
ATGACAACGTANACAGTGATTTGGTTGCAATGGCAGGGAATTCAGCTGGT
ATNAAATACATGCTGTATTGNTTCCAAGGCTTCGGGGGNAAAACTCCCAA
AGTATGCTGGNGTTACGGAAATGGAACTGTGB

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR003137	PA_domain
noIPR	unintegrated