CV090599 | GDV

EST Overview


Name	CV090599
Unique Name	CV090599
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	826

Libraries


Library Name	Type
LIBEST_014530 cDNA cold acclimated Bluecrop library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of CV090599 vs. P. persica 1.0 peptide
Match: ppa023355m ()

HSP 1 Score: 53.1434 bits (126), Expect = 1.744e-7
Identity = 31/89 (34.83%), Postives = 48/89 (53.93%), Query Frame = 2

Query:  509 DRIXRLPDEXXXXXXXXXXXXEAARTSILSSRWSYLWTFFTGSMDFDGTETLLETRWKESRLNLKALDS*SGESILRSHQGISVDELKV 775
            D+I +LPD             EAART +LS RW +LW   T +++FD  + L + + K  R  +K   S +   +L+ HQG S+DE ++
Sbjct:   34 DQISQLPDAILISILSLLGIREAARTCVLSKRWVFLWKQIT-TLNFDDIDALSKPQKKRKR--VKTTSSYNWVKVLQLHQGPSLDEFQI 119

[Close]

BLAST of CV090599 vs. TrEMBL
Match: B9RI98|B9RI98_RICCO (Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1577330 PE=4 SV=1)

HSP 1 Score: 62.003 bits (149), Expect = 7.325e-8
Identity = 35/100 (35.00%), Postives = 56/100 (56.00%), Query Frame = 2

Query:  494 DNNSGDRIXRLPDEXXXXXXXXXXXXEAARTSILSSRWSYLWTFFTGSMDFDGTETLLETRWKESRLNLKALDS*SG------ESILRSHQGISVDELKV 775
            + N  + I +LP++            EAARTSILS+RW +LWT++TG MDFD + T+    + +  L  K+LD            +LRSH+G +++ L++
Sbjct:   28 NGNISEHISQLPEDVLLNILSRLTMKEAARTSILSTRWRHLWTYYTGIMDFDASLTMW---YLQLGLGSKSLDMERHSFVSWVNQVLRSHEGPTMEGLRI 124

The following BLAST results are available for this feature:

BLAST of CV090599 vs. P. persica 1.0 peptide
BLAST of CV090599 vs. TrEMBL

BLAST of CV090599 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
ppa023355m	1.744e-7	34.83		[more]

BLAST of CV090599 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 1


Match Name	E-value	Identity	Description
B9RI98\|B9RI98_RICCO	7.325e-8	35.00	Ubiquitin-protein ligase, putative OS=Ricinus comm...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022364	F-box domain, Skp2-like	SUPERFAMILY	81383	F-box domain	coord: 37..77 score: 2.4
None	No IPR available	GENE3D	1.20.1280.50	no description	coord: 36..75 score: 2.7
None	No IPR available	SEG	seg	seg	coord: 49..60 score
None	No IPR available	SEG	seg	seg	coord: 32..48 score

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV090599 ID=CV090599; Name=CV090599; organism=Vaccinium corymbosum; type=EST; length=826bp
TGTGGCTCTATCACTATCCGCACCGACGAACCACAACTGCTCTGTCTCTC
GCTTGTAAGAGGGAGAGGAATCGTTCANAGCCGCAGCCAAAGGTTTCAGC
TGGATCACTTTCAGCAAGCAGACGAAGTCAATCTAGATTGGCACTGTACA
TGAGCCGAACCCCAAAACCAGAGTTGGACACGATGGCCGGAACCCGTGGC
CGTAGTGTGAGATCGGTCGATATCCTCTTTCACTTGACATATATCTGTTC
CTGATGATTTTGGTTGCTTTGATTTGGAGACCGCGGATCTCTGTGCGATT
GTTTCTGGCGAANTCGGATCGAGGAAGAGATGATGTGTTGAAGAGAACAT
AGCTTCGGTTTATTTATTATCTATTTATGCTTATAAATTAAGTCGCANGT
GTGGAACGTGCCAAAGTTCTTGTCTTTCTGATAAAGATGGGGAAAGCAGT
TCGATTATCATCTGAATTTGGGCTGANAAAGTGTTACAAGACCGATAATA
ATTCCGGGGATCGAATTANTCGATTGCCTGATGAAATCTTGGTGATTATC
CTCTCTGGCTTGTCGATTGNTGAAGCGGCTAGAACTAGCATCCTCTCGAG
CAGATGGAGCTATTTGTGGACATTTTTCACCGGCAGTATGGACTTTGATG
GTACTGAGACACTGCTTGAAACGAGATGGAAGGAAAGTCGCTTGAACTTG
AAAGCACTAGATTCGTAATCGGGTGAATCAATTTTAAGATCACATCAGGG
CATATCTGTNGATGAACTCAAGGTTGGTTTACCTTGGATACAGCTGGAAG
TCCGACATTGATAGCTGGATAGACTT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR022364	F-box domain, Skp2-like
noIPR	unintegrated