CV190538 | GDV

EST Overview


Name	CV190538
Unique Name	CV190538
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	496

Libraries


Library Name	Type
LIBEST_016374 Vco01	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide	2011-02-10
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of CV190538 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0019s07830.1 ()

HSP 1 Score: 100.523 bits (249), Expect = 8.988e-29
Identity = 64/164 (39.02%), Postives = 82/164 (50.00%), Query Frame = 3

Query:   63 EHTCPTCRAPVAPPENGTSTT----GSWADAHQQGTATPSTPSQSSNGDGEGNDIVRQHQARLQXXXXXXSIYGRSFVYPSVNTFMGAP------------------SNFGGQSLTGQSQQHPFVIPDGAANLGNTQFPHCSFVPFLAPGSDVNDCEKFGSTLN 488
            +HTCPTCRA V PPEN  S +    G+  D HQQ T T ++ ++ S G G  +D + ++Q RLQ      S+Y +SF YPS NT M +P                     G Q + GQ +   F I  G  NL   Q PHC FVP  APG+ V   E+  ST N
Sbjct:  323 QHTCPTCRALVVPPENSVSASGAQHGAQPDTHQQETGTATSATRISAG-GVADDSLSRNQVRLQAAAAAASVYEKSFTYPSANTIMWSPGYALLPQVQRPLADSTNMEPSGDQGVVGQPRLQ-FSIQGGPPNLTLPQLPHCVFVPIQAPGACVYQGERACSTPN 484

HSP 2 Score: 43.5134 bits (101), Expect = 8.988e-29
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:    4 KRLRCGHLFHVQCLRSWLER 63
            K+L CGHLFHV CLRSWLER
Sbjct:  303 KKLLCGHLFHVHCLRSWLER 322

[Close]

BLAST of CV190538 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0013s09710.1 ()

HSP 1 Score: 48.521 bits (114), Expect = 3.013e-13
Identity = 22/35 (62.86%), Postives = 24/35 (68.57%), Query Frame = 3

Query:   63 EHTCPTCRAPVAPPENGTSTT----GSWADAHQQG 155
            +HTCPTCRA V PPENG ST     G+  D HQQG
Sbjct:  145 QHTCPTCRALVVPPENGASTAGGQHGAQPDTHQQG 179

HSP 2 Score: 43.1282 bits (100), Expect = 3.013e-13
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:    4 KRLRCGHLFHVQCLRSWLER 63
            K+L CGHLFHV CLRSWLER
Sbjct:  125 KKLICGHLFHVHCLRSWLER 144

[Close]

BLAST of CV190538 vs. P. persica 1.0 peptide
Match: ppa003806m ()

HSP 1 Score: 100.523 bits (249), Expect = 3.983e-22
Identity = 69/170 (40.59%), Postives = 85/170 (50.00%), Query Frame = 3

Query:   27 VPCAVSSFVVRAEHTCPTCRAPVAPPENGTSTT----GSWADAHQQGTATPSTPSQSSNGDGEGNDIVRQHQARLQXXXXXXSIYGRSFVYPSVNTFMGAPSNFGGQSLTGQSQQ----------HP-FVIPDGAANLGNTQFPHCSFVPFLAPGSDVNDCEKFGSTLNM 491
            VPC + S++ R +HTCPTCRA V PPENG  T     GS +DAHQQGT T  T        G   D + QH+ARL+      SIY +S VYPS N  + +P       +  Q             HP    P G +NL + QFPH  FVPF  P  DV   E+ G   N+
Sbjct:  313 VPC-LRSWLER-QHTCPTCRALVEPPENGAGTAGGHRGSRSDAHQQGTGT--TAQGGGVAGGVAGDNLSQHEARLRAAAAAASIYEKSHVYPSANRLVWSPGYVALPQVQRQMADSANTESSGVLHPQLATPGGPSNLSSPQFPHYMFVPFEVP--DVAYEERLGGDPNI 476

[Close]

BLAST of CV190538 vs. TrEMBL
Match: B9S201|B9S201_RICCO (Protein binding protein, putative OS=Ricinus communis GN=RCOM_1324630 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.189e-26
Identity = 64/163 (39.26%), Postives = 81/163 (49.69%), Query Frame = 3

Query:   63 EHTCPTCRAPVAPPENGTSTT-----GSWADAHQQGTATPSTPSQSSNGDGEGNDIVRQHQARLQXXXXXXSIYGRSFVYPSVNTFMGAPS--------------NFGGQSLTGQSQQHPFVIPDGAANLGNTQFPHCSFVPFLAPGSDVNDCEKFGSTLNMP 494
            +HTCPTCRA V PP      T     GS ++AH+QGT   +  +Q S G G  +D + +HQAR+Q      S+Y +SFVYPS NT + +P                 G Q+  GQSQ  P     G +NL   QFP C FVPF  P       E+ G   NMP
Sbjct:  323 QHTCPTCRALVVPPTQHDINTAGGQHGSQSEAHRQGTGAANPGTQGSIG-GIADDNLSRHQARIQAAAAAASLYEKSFVYPSANTLVWSPGYALLPQAQRPLADPTGGEQAFVGQSQPQP-AFHAGPSNLTLPQFPQCVFVPFQVPNDSGAQGERLG---NMP 480

HSP 2 Score: 43.5134 bits (101), Expect = 1.189e-26
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:    4 KRLRCGHLFHVQCLRSWLER 63
            K+L CGHLFHV CLRSWLER
Sbjct:  303 KKLLCGHLFHVHCLRSWLER 322

[Close]

BLAST of CV190538 vs. TrEMBL
Match: B9I5H4|B9I5H4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_774007 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.187e-21
Identity = 44/88 (50.00%), Postives = 53/88 (60.23%), Query Frame = 3

Query:   63 EHTCPTCRAPVAPPENGTSTT----GSWADAHQQGTATPSTPSQSSNG----DGEGNDIVRQHQARLQXXXXXXSIYGRSFVYPSVNT 302
            +HTCPTCRA V PPENG ST     G+  D HQQG  T +T +Q S G    DG  +D + Q+Q RLQ      S+Y +SF YPS NT
Sbjct:  323 QHTCPTCRALVVPPENGASTAGGQHGAQPDTHQQGIGTATTAAQISAGGVADDGVADDSLIQNQVRLQAAAAAASLYEKSFTYPSANT 410

HSP 2 Score: 43.1282 bits (100), Expect = 2.187e-21
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:    4 KRLRCGHLFHVQCLRSWLER 63
            K+L CGHLFHV CLRSWLER
Sbjct:  303 KKLICGHLFHVHCLRSWLER 322

[Close]

BLAST of CV190538 vs. TrEMBL
Match: D7L5K2|D7L5K2_ARALY (Zinc finger family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_897909 PE=4 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.328e-20
Identity = 43/103 (41.75%), Postives = 59/103 (57.28%), Query Frame = 3

Query:   63 EHTCPTCRAPVAPPENGTSTTGSWADAHQ---QGTATPSTP-SQSSNGDGEGNDIVRQHQARLQXXXXXXSIYGRSFVYPSVNTFMGAPSNFGGQSLTGQSQQ 359
            + TCPTCRA V PPEN TS        HQ   QGT++ +   S++S+  G  ND + +H ARLQ      S+YG+S VYPS NT   +PS  G + ++ +  Q
Sbjct:  323 QQTCPTCRALVVPPENATSAAAGQRGLHQGSQQGTSSSNNQGSEASSAAGVSNDNLSRHHARLQAAASAASMYGKSMVYPSANTVAWSPSIPGTEQVSTEPHQ 425

HSP 2 Score: 43.1282 bits (100), Expect = 2.328e-20
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:    4 KRLRCGHLFHVQCLRSWLER 63
            K+L CGHLFHV CLRSWLER
Sbjct:  303 KKLICGHLFHVHCLRSWLER 322

[Close]

BLAST of CV190538 vs. TrEMBL
Match: B9NBT4|B9NBT4_POPTR (Predicted protein (Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_280784 PE=4 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.492e-19
Identity = 39/86 (45.35%), Postives = 52/86 (60.47%), Query Frame = 3

Query:   63 EHTCPTCRAPVAPPENGTSTT----GSWADAHQQGTATPSTPSQSSNGDGEGNDIVRQHQARLQXXXXXXSIYGRSFVYPSVNTFM 308
            +HTCPTCRA V PPEN  S +    G+  D HQQ T T ++ ++ S G G  +D + ++Q RLQ      S+Y +SF YPS NT M
Sbjct:  323 QHTCPTCRALVVPPENSVSASGAQHGAQPDTHQQETGTATSATRISAG-GVADDSLSRNQVRLQAAAAAASVYEKSFTYPSANTIM 407

HSP 2 Score: 43.5134 bits (101), Expect = 2.492e-19
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:    4 KRLRCGHLFHVQCLRSWLER 63
            K+L CGHLFHV CLRSWLER
Sbjct:  303 KKLLCGHLFHVHCLRSWLER 322

[Close]

BLAST of CV190538 vs. TrEMBL
Match: D7T7R2|D7T7R2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_39.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00024416001 PE=4 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 9.303e-19
Identity = 42/89 (47.19%), Postives = 53/89 (59.55%), Query Frame = 3

Query:   63 EHTCPTCRAPVAPPENGTSTTGSW----ADAHQQGTATPSTPSQSSNGDGEGNDIVRQHQARLQXXXXXXSIYGRSFVYPSVNTFMGAP 317
            +HTCPTCRA V PPENGT+T G      +D HQ  T+T     Q   GD   +D +  H+ARLQ      +IY +SFVYPS NT + +P
Sbjct:  179 QHTCPTCRALVVPPENGTTTAGGQHGPRSDFHQASTST-----QGLTGD-VADDNLNWHRARLQAAASAAAIYEKSFVYPSPNTLVWSP 261

HSP 2 Score: 41.9726 bits (97), Expect = 9.303e-19
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:    4 KRLRCGHLFHVQCLRSWLER 63
            K+L CGHLFH+ CLRSWLER
Sbjct:  159 KKLICGHLFHMHCLRSWLER 178

[Close]

BLAST of CV190538 vs. TrEMBL
Match: Q9LW77|Q9LW77_ARATH (Putative zinc finger protein OS=Arabidopsis thaliana GN=At3g16090/MSL1_13 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.032e-18
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 3

Query:   63 EHTCPTCRAPVAPPENGTSTTGSWADAHQ---QGTATPSTP-SQSSNGDGEGNDIVRQHQARLQXXXXXXSIYGRSFVYPSVNTFMGAPSNFGGQSLTGQSQQ 359
            + TCPTCRA V PPEN TS      + HQ   QGT++     S+ S+  G  N+ + +H ARLQ      S+YG+S VYPS NT   +    G + ++ +  Q
Sbjct:  323 QQTCPTCRALVVPPENATSAAPGQRELHQGSQQGTSSSGNQGSEISSSAGVSNNSLSRHHARLQAAASAASVYGKSMVYPSANTVAWSSGVPGTEQVSTEPDQ 425

HSP 2 Score: 43.1282 bits (100), Expect = 2.032e-18
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:    4 KRLRCGHLFHVQCLRSWLER 63
            K+L CGHLFHV CLRSWLER
Sbjct:  303 KKLICGHLFHVHCLRSWLER 322

[Close]

BLAST of CV190538 vs. TrEMBL
Match: Q9SS55|Q9SS55_ARATH (F16G16.4 protein OS=Arabidopsis thaliana GN=F16G16.4 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.641e-18
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 3

Query:   63 EHTCPTCRAPVAPPENGTSTT----GSWADAHQQGTATPSTPSQSSNGDGEGNDIVRQHQARLQXXXXXXSIYGRSFVYP-SVNTFMGAPSN 323
            ++TCPTCRA V P EN TST     G   ++ QQGT T S+  Q S+     ++ + +H+AR Q      SIYGRS VYP S NT + +  N
Sbjct:  359 QNTCPTCRALVVPAENATSTASGNRGPHQESLQQGTGTSSSDGQGSSVSAAASENMSRHEARFQAAASAASIYGRSIVYPSSANTLVWSQGN 450

HSP 2 Score: 43.1282 bits (100), Expect = 2.641e-18
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:    4 KRLRCGHLFHVQCLRSWLER 63
            K+L CGHLFHV CLRSWLER
Sbjct:  339 KKLVCGHLFHVHCLRSWLER 358

[Close]

BLAST of CV190538 vs. TrEMBL
Match: Q6NPT7|Q6NPT7_ARATH (At1g65040 OS=Arabidopsis thaliana GN=At HRD1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.646e-18
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 3

Query:   63 EHTCPTCRAPVAPPENGTSTT----GSWADAHQQGTATPSTPSQSSNGDGEGNDIVRQHQARLQXXXXXXSIYGRSFVYP-SVNTFMGAPSN 323
            ++TCPTCRA V P EN TST     G   ++ QQGT T S+  Q S+     ++ + +H+AR Q      SIYGRS VYP S NT + +  N
Sbjct:  323 QNTCPTCRALVVPAENATSTASGNRGPHQESLQQGTGTSSSDGQGSSVSAAASENMSRHEARFQAAASAASIYGRSIVYPSSANTLVWSQGN 414

HSP 2 Score: 43.1282 bits (100), Expect = 2.646e-18
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:    4 KRLRCGHLFHVQCLRSWLER 63
            K+L CGHLFHV CLRSWLER
Sbjct:  303 KKLVCGHLFHVHCLRSWLER 322

[Close]

BLAST of CV190538 vs. TrEMBL
Match: B3H675|B3H675_ARATH (Uncharacterized protein At1g65040.3 OS=Arabidopsis thaliana GN=At1g65040 PE=4 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.656e-18
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 3

Query:   63 EHTCPTCRAPVAPPENGTSTT----GSWADAHQQGTATPSTPSQSSNGDGEGNDIVRQHQARLQXXXXXXSIYGRSFVYP-SVNTFMGAPSN 323
            ++TCPTCRA V P EN TST     G   ++ QQGT T S+  Q S+     ++ + +H+AR Q      SIYGRS VYP S NT + +  N
Sbjct:  252 QNTCPTCRALVVPAENATSTASGNRGPHQESLQQGTGTSSSDGQGSSVSAAASENMSRHEARFQAAASAASIYGRSIVYPSSANTLVWSQGN 343

HSP 2 Score: 43.1282 bits (100), Expect = 2.656e-18
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:    4 KRLRCGHLFHVQCLRSWLER 63
            K+L CGHLFHV CLRSWLER
Sbjct:  232 KKLVCGHLFHVHCLRSWLER 251

[Close]

BLAST of CV190538 vs. TrEMBL
Match: Q27GM7|Q27GM7_ARATH (Uncharacterized protein At1g65040.1 OS=Arabidopsis thaliana GN=At1g65040 PE=4 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.678e-18
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 3

Query:   63 EHTCPTCRAPVAPPENGTSTT----GSWADAHQQGTATPSTPSQSSNGDGEGNDIVRQHQARLQXXXXXXSIYGRSFVYP-SVNTFMGAPSN 323
            ++TCPTCRA V P EN TST     G   ++ QQGT T S+  Q S+     ++ + +H+AR Q      SIYGRS VYP S NT + +  N
Sbjct:  144 QNTCPTCRALVVPAENATSTASGNRGPHQESLQQGTGTSSSDGQGSSVSAAASENMSRHEARFQAAASAASIYGRSIVYPSSANTLVWSQGN 235

HSP 2 Score: 43.1282 bits (100), Expect = 2.678e-18
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:    4 KRLRCGHLFHVQCLRSWLER 63
            K+L CGHLFHV CLRSWLER
Sbjct:  124 KKLVCGHLFHVHCLRSWLER 143

[Close]

BLAST of CV190538 vs. Vitis vinifera peptide
Match: GSVIVT01024416001 (assembled CDS)

HSP 1 Score: 75.0998 bits (183), Expect = 5.602e-21
Identity = 42/89 (47.19%), Postives = 53/89 (59.55%), Query Frame = 3

Query:   63 EHTCPTCRAPVAPPENGTSTTGSW----ADAHQQGTATPSTPSQSSNGDGEGNDIVRQHQARLQXXXXXXSIYGRSFVYPSVNTFMGAP 317
            +HTCPTCRA V PPENGT+T G      +D HQ  T+T     Q   GD   +D +  H+ARLQ      +IY +SFVYPS NT + +P
Sbjct:  179 QHTCPTCRALVVPPENGTTTAGGQHGPRSDFHQASTST-----QGLTGD-VADDNLNWHRARLQAAASAAAIYEKSFVYPSPNTLVWSP 261

HSP 2 Score: 41.9726 bits (97), Expect = 5.602e-21
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:    4 KRLRCGHLFHVQCLRSWLER 63
            K+L CGHLFH+ CLRSWLER
Sbjct:  159 KKLICGHLFHMHCLRSWLER 178

[Close]

BLAST of CV190538 vs. TAIR peptide
Match: AT3G16090.1 (| Symbols: | RING/U-box superfamily protein | chr3:5456513-5458694 FORWARD LENGTH=492)

HSP 1 Score: 72.7886 bits (177), Expect = 1.733e-20
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 3

Query:   63 EHTCPTCRAPVAPPENGTSTTGSWADAHQ---QGTATPSTP-SQSSNGDGEGNDIVRQHQARLQXXXXXXSIYGRSFVYPSVNTFMGAPSNFGGQSLTGQSQQ 359
            + TCPTCRA V PPEN TS      + HQ   QGT++     S+ S+  G  N+ + +H ARLQ      S+YG+S VYPS NT   +    G + ++ +  Q
Sbjct:  323 QQTCPTCRALVVPPENATSAAPGQRELHQGSQQGTSSSGNQGSEISSSAGVSNNSLSRHHARLQAAASAASVYGKSMVYPSANTVAWSSGVPGTEQVSTEPDQ 425

HSP 2 Score: 43.1282 bits (100), Expect = 1.733e-20
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:    4 KRLRCGHLFHVQCLRSWLER 63
            K+L CGHLFHV CLRSWLER
Sbjct:  303 KKLICGHLFHVHCLRSWLER 322

[Close]

BLAST of CV190538 vs. TAIR peptide
Match: AT1G65040.2 (| Symbols: | RING/U-box superfamily protein | chr1:24160105-24163365 REVERSE LENGTH=460)

HSP 1 Score: 72.4034 bits (176), Expect = 2.257e-20
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 3

Query:   63 EHTCPTCRAPVAPPENGTSTT----GSWADAHQQGTATPSTPSQSSNGDGEGNDIVRQHQARLQXXXXXXSIYGRSFVYP-SVNTFMGAPSN 323
            ++TCPTCRA V P EN TST     G   ++ QQGT T S+  Q S+     ++ + +H+AR Q      SIYGRS VYP S NT + +  N
Sbjct:  323 QNTCPTCRALVVPAENATSTASGNRGPHQESLQQGTGTSSSDGQGSSVSAAASENMSRHEARFQAAASAASIYGRSIVYPSSANTLVWSQGN 414

HSP 2 Score: 43.1282 bits (100), Expect = 2.257e-20
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:    4 KRLRCGHLFHVQCLRSWLER 63
            K+L CGHLFHV CLRSWLER
Sbjct:  303 KKLVCGHLFHVHCLRSWLER 322

[Close]

BLAST of CV190538 vs. TAIR peptide
Match: AT1G65040.3 (| Symbols: | RING/U-box superfamily protein | chr1:24160105-24163365 REVERSE LENGTH=389)

HSP 1 Score: 72.4034 bits (176), Expect = 2.265e-20
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 3

Query:   63 EHTCPTCRAPVAPPENGTSTT----GSWADAHQQGTATPSTPSQSSNGDGEGNDIVRQHQARLQXXXXXXSIYGRSFVYP-SVNTFMGAPSN 323
            ++TCPTCRA V P EN TST     G   ++ QQGT T S+  Q S+     ++ + +H+AR Q      SIYGRS VYP S NT + +  N
Sbjct:  252 QNTCPTCRALVVPAENATSTASGNRGPHQESLQQGTGTSSSDGQGSSVSAAASENMSRHEARFQAAASAASIYGRSIVYPSSANTLVWSQGN 343

HSP 2 Score: 43.1282 bits (100), Expect = 2.265e-20
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:    4 KRLRCGHLFHVQCLRSWLER 63
            K+L CGHLFHV CLRSWLER
Sbjct:  232 KKLVCGHLFHVHCLRSWLER 251

[Close]

BLAST of CV190538 vs. TAIR peptide
Match: AT1G65040.1 (| Symbols: | RING/U-box superfamily protein | chr1:24160105-24161992 REVERSE LENGTH=281)

HSP 1 Score: 72.4034 bits (176), Expect = 2.282e-20
Identity = 40/92 (43.48%), Postives = 53/92 (57.61%), Query Frame = 3

Query:   63 EHTCPTCRAPVAPPENGTSTT----GSWADAHQQGTATPSTPSQSSNGDGEGNDIVRQHQARLQXXXXXXSIYGRSFVYP-SVNTFMGAPSN 323
            ++TCPTCRA V P EN TST     G   ++ QQGT T S+  Q S+     ++ + +H+AR Q      SIYGRS VYP S NT + +  N
Sbjct:  144 QNTCPTCRALVVPAENATSTASGNRGPHQESLQQGTGTSSSDGQGSSVSAAASENMSRHEARFQAAASAASIYGRSIVYPSSANTLVWSQGN 235

HSP 2 Score: 43.1282 bits (100), Expect = 2.282e-20
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:    4 KRLRCGHLFHVQCLRSWLER 63
            K+L CGHLFHV CLRSWLER
Sbjct:  124 KKLVCGHLFHVHCLRSWLER 143

The following BLAST results are available for this feature:

BLAST of CV190538 vs. Populus trichocarpa peptide v2.0
BLAST of CV190538 vs. P. persica 1.0 peptide
BLAST of CV190538 vs. TrEMBL
BLAST of CV190538 vs. Vitis vinifera peptide
BLAST of CV190538 vs. TAIR peptide

BLAST of CV190538 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
POPTR_0019s07830.1	8.988e-29	39.02		[more]
POPTR_0013s09710.1	3.013e-13	62.86		[more]

BLAST of CV190538 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
ppa003806m	3.983e-22	40.59		[more]

BLAST of CV190538 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
B9S201\|B9S201_RICCO	1.189e-26	39.26	Protein binding protein, putative OS=Ricinus commu...	[more]
B9I5H4\|B9I5H4_POPTR	2.187e-21	50.00	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7L5K2\|D7L5K2_ARALY	2.328e-20	41.75	Zinc finger family protein OS=Arabidopsis lyrata s...	[more]
B9NBT4\|B9NBT4_POPTR	2.492e-19	45.35	Predicted protein (Fragment) OS=Populus trichocarp...	[more]
D7T7R2\|D7T7R2_VITVI	9.303e-19	47.19	Whole genome shotgun sequence of line PN40024, sca...	[more]
Q9LW77\|Q9LW77_ARATH	2.032e-18	38.83	Putative zinc finger protein OS=Arabidopsis thalia...	[more]
Q9SS55\|Q9SS55_ARATH	2.641e-18	43.48	F16G16.4 protein OS=Arabidopsis thaliana GN=F16G16...	[more]
Q6NPT7\|Q6NPT7_ARATH	2.646e-18	43.48	At1g65040 OS=Arabidopsis thaliana GN=At HRD1 PE=2 ...	[more]
B3H675\|B3H675_ARATH	2.656e-18	43.48	Uncharacterized protein At1g65040.3 OS=Arabidopsis...	[more]
Q27GM7\|Q27GM7_ARATH	2.678e-18	43.48	Uncharacterized protein At1g65040.1 OS=Arabidopsis...	[more]

BLAST of CV190538 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1


Match Name	E-value	Identity	Description
GSVIVT01024416001	5.602e-21	47.19	assembled CDS	[more]

BLAST of CV190538 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 4


Match Name	E-value	Identity	Description
AT3G16090.1	1.733e-20	38.83	\| Symbols: \| RING/U-box superfamily protein \| chr...	[more]
AT1G65040.2	2.257e-20	43.48	\| Symbols: \| RING/U-box superfamily protein \| chr...	[more]
AT1G65040.3	2.265e-20	43.48	\| Symbols: \| RING/U-box superfamily protein \| chr...	[more]
AT1G65040.1	2.282e-20	43.48	\| Symbols: \| RING/U-box superfamily protein \| chr...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	no description	coord: 3..22 score: 0.0
None	No IPR available	PANTHER	PTHR12477	SYNOVIOLIN-RELATED	coord: 2..21 score: 1.7
None	No IPR available	PANTHER	PTHR12477:SF10	SYNOVIOLIN-RELATED	coord: 2..21 score: 1.7
None	No IPR available	SEG	seg	seg	coord: 31..45 score
None	No IPR available	PANTHER	PTHR12477	SYNOVIOLIN-RELATED	coord: 23..100 score: 1.1
None	No IPR available	PANTHER	PTHR12477:SF10	SYNOVIOLIN-RELATED	coord: 23..100 score: 1.1
None	No IPR available	SEG	seg	seg	coord: 81..86 score

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV190538 ID=CV190538; Name=CV190538; organism=Vaccinium corymbosum; type=EST; length=496bp
GGAAAGAGACTACGTTGCGGGCATCTGTTCCATGTGCAGTGTCTTCGTTC
GTGGTTAGAGCGGAGCACACGTGTCCAACTTGTAGGGCCCCTGTTGCACC
ACCTGAAAATGGGACTAGTACTACTGGGTCATGGGCAGATGCTCATCAAC
AAGGAACAGCAACACCAAGTACACCTTCTCAGAGTTCAAATGGAGATGGT
GAGGGAAATGACATTGTTAGGCAGCATCAGGCCAGACTACAAGCTGCTGC
TGCGGCCGCCTCAATATATGGAAGATCTTTCGTTTATCCTTCTGTAAATA
CATTTATGGGGGCCCCTTCCAACTTTGGTGGACAATCTTTGACTGGACAG
TCGCAACAGCATCCATTTGTAATTCCAGATGGAGCTGCCAACTTGGGCAA
TACTCAATTTCCACATTGCAGTTTTGTCCCTTTCTTGGCTCCTGGATCAG
ATGTGAACGACTGTGAGAAATTTGGCAGCACTCTAAATATGCCAGA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
noIPR	unintegrated