CV191380

EST Overview
NameCV191380
Unique NameCV191380
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length638
Libraries
Library NameType
LIBEST_016374 Vco01cdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide2011-01-18
InterProScan analysis for Vaccinium corymbosum unigene v12011-01-18
Homology
[Close]
BLAST of CV191380 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0017s02430.1 ()

HSP 1 Score: 53.1434 bits (126), Expect = 1.631e-7
Identity = 34/73 (46.58%), Postives = 42/73 (57.53%), Query Frame = 3 
Query:    9 DQIKSSRGSRLNLINRELGFEQP---------ARKISGTERVVNGIRDLSKCMIIHPDN---RKWSDFNLILA 191
            D+IKSSRGSR NLI +E G              RK+S  E V+NGIR +S   +IHPDN   R W+ F L+ A
Sbjct:   31 DRIKSSRGSRFNLIEKEFGLVNNNGSSSMTSWRRKLS-RESVINGIRYVSSGFVIHPDNRWYRAWTKFILLWA 102
[Close]
BLAST of CV191380 vs. P. persica 1.0 peptide
Match: ppa001431m ()

HSP 1 Score: 51.2174 bits (121), Expect = 4.436e-7
Identity = 30/67 (44.78%), Postives = 41/67 (61.19%), Query Frame = 3 
Query:    9 DQIKSSRGSRLNLINRELGFEQPARKI---SGTERVVNGIRDLSKCMIIHPDN---RKWSDFNLILA 191
            D+IKSSRGSR NLI  ELG +  +  I      + ++NG++ LS   +IHPDN   R W+ F L+ A
Sbjct:   29 DRIKSSRGSRFNLIKNELGLDDDSSSILRRFSRQSLINGVKGLSH-GVIHPDNWWYRAWTKFILVWA 94
The following BLAST results are available for this feature:
BLAST of CV191380 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
POPTR_0017s02430.11.631e-746.58[more]
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BLAST of CV191380 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
ppa001431m4.436e-744.78[more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 10..19
score: NAcoord: 30..45
score
NoneNo IPR availableSEGsegsegcoord: 20..46
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CV191380 ID=CV191380; Name=CV191380; organism=Vaccinium corymbosum; type=EST; length=638bp
ACGAGGGAGATCAAATCAAGTCGTCGCGAGGAAGCCGATTGAATCTGATC
AACAGGGAGTTAGGATTCGAGCAGCCGGCTCGTAAGATATCCGGCACAGA
AAGGGTCGTCAATGGCATCAGAGACCTCTCTAAATGCATGATCATCCATC
CTGATAACAGAAAATGGTCGGATTTTAACCTGATACTCGCCGGGAAATGG
ACGGAAATTGTACAGTGCCGAAATCTGGATCTGAGACGGGTTTGATCTCA
CACTGGCTGGAAATCACACCGCCATGCCGGAAAATCGCACACCCATGAGC
GGGAAATCGCACACCCATGGCCGGAAATCGCACAGCCATCCCGTTCCGTA
CCTGTCCCACACCAGGCCCATCTTCTTCACTTCATCTTCTTGTTTGGGTG
TACACAGAGAAAAGAAACCGCTACAGCAACACTACTTCATCGATTTTCCA
TTTTCCAGATCGTGAAAATAGAGACAGAGAAAGAGTAAAGTGAGAGAGAG
AGAGAGAGAGAGCAATAGGGAAACTGGGAAAGACAAAGGGCAATAGTAGT
AATCCAAGGTGGCCCCTGCCTTGTGTGTACATGTCAAGATGAACTATTCA
TGAACAGGTACAAAAACCGCATGTTACCGGAAGTTTGT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated