DW043380 | GDV

EST Overview


Name	DW043380
Unique Name	DW043380
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	585

Libraries


Library Name	Type
LIBEST_018810 Subtracted cDNA library of Vaccinium corymbosum	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Swissprot	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide	2011-02-10
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of DW043380 vs. DB:swissprot:display
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.212e-21
Identity = 46/60 (76.67%), Postives = 53/60 (88.33%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGPA 201
            YKEKHPNNKSVA VGKAGGDKWKQ++ AEKAP+ +KAEKRK EY KN++AYN+KQA G A
Sbjct:   54 YKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGAA 113

[Close]

BLAST of DW043380 vs. DB:swissprot:display
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.990e-18
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            + ++HP NK+V+AVGKA G KWK MS AEKAPY AK+EKRK EY KN+ AYN+KQAEGP
Sbjct:   62 FNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGP 120

[Close]

BLAST of DW043380 vs. DB:swissprot:display
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.536e-14
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQA 189
            +KEK+P NKSVAAVGKA GD+WK +S ++KAPY AKA K K EYNK I AYN+ ++
Sbjct:   59 FKEKNPKNKSVAAVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGES 114

[Close]

BLAST of DW043380 vs. DB:swissprot:display
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.421e-14
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGPA 201
            +K+K+P NKSVAAVGKA G++WK +S +EKAPY AKA K K EYNK I AYN+ ++   A
Sbjct:   60 FKQKNPKNKSVAAVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAA 119

[Close]

BLAST of DW043380 vs. DB:swissprot:display
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.452e-13
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEK 183
            +YK+ HPNNKSVAAVGKA G++WK +S  EKAPY  +A K+K EY   ++AYN+K
Sbjct:   62 QYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKK 116

[Close]

BLAST of DW043380 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0002s01000.2 ()

HSP 1 Score: 99.3673 bits (246), Expect = 1.715e-21
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            +YK++HP NKSVAAVGKAGGDKWK +S AEKAPY AKA+KRK EY K ++AYN++QAEGP
Sbjct:   60 QYKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKADKRKVEYEKKMKAYNKEQAEGP 119

[Close]

BLAST of DW043380 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0002s01000.1 ()

HSP 1 Score: 99.3673 bits (246), Expect = 1.715e-21
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            +YK++HP NKSVAAVGKAGGDKWK +S AEKAPY AKA+KRK EY K ++AYN++QAEGP
Sbjct:   60 QYKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKADKRKVEYEKKMKAYNKEQAEGP 119

[Close]

BLAST of DW043380 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0005s10440.1 ()

HSP 1 Score: 97.4413 bits (241), Expect = 6.516e-21
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEG 195
            +YKE HPNNKSVAAVGKAGGDKWK +S AEKAPY AKAEKRK EYNK++ AYN++ A G
Sbjct:   56 QYKESHPNNKSVAAVGKAGGDKWKSLSEAEKAPYAAKAEKRKFEYNKDMAAYNKRLAGG 114

[Close]

BLAST of DW043380 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0005s27390.1 ()

HSP 1 Score: 97.0561 bits (240), Expect = 8.510e-21
Identity = 43/60 (71.67%), Postives = 52/60 (86.67%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            +YK +HP NKSVAAVGKAGGDKWK +S AEKAP+ AKA+KRK EY K ++AYN++QAEGP
Sbjct:   61 QYKREHPKNKSVAAVGKAGGDKWKSLSEAEKAPFVAKADKRKVEYEKKMKAYNKEQAEGP 120

[Close]

BLAST of DW043380 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0010s19720.1 ()

HSP 1 Score: 85.1149 bits (209), Expect = 3.346e-17
Identity = 37/55 (67.27%), Postives = 48/55 (87.27%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQ 186
            YK++HPN K+V+AVGKAGG+KWK +S AEKAPY+AKA KRK++Y K + AYN+KQ
Sbjct:   74 YKQEHPNVKAVSAVGKAGGEKWKSLSAAEKAPYEAKAAKRKSDYEKLMTAYNKKQ 128

[Close]

BLAST of DW043380 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0008s06730.2 ()

HSP 1 Score: 80.4925 bits (197), Expect = 8.243e-16
Identity = 35/55 (63.64%), Postives = 47/55 (85.45%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQ 186
            YK++HPN K+V+AVGKAGG+KWK MS AEKAPY+AKA  +K++Y K + AY++KQ
Sbjct:   74 YKQEHPNMKAVSAVGKAGGEKWKSMSAAEKAPYEAKAAIKKSDYGKLMTAYSKKQ 128

[Close]

BLAST of DW043380 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0008s06730.1 ()

HSP 1 Score: 80.4925 bits (197), Expect = 8.243e-16
Identity = 35/55 (63.64%), Postives = 47/55 (85.45%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQ 186
            YK++HPN K+V+AVGKAGG+KWK MS AEKAPY+AKA  +K++Y K + AY++KQ
Sbjct:   74 YKQEHPNMKAVSAVGKAGGEKWKSMSAAEKAPYEAKAAIKKSDYGKLMTAYSKKQ 128

[Close]

BLAST of DW043380 vs. P. persica 1.0 peptide
Match: ppa012962m ()

HSP 1 Score: 106.686 bits (265), Expect = 7.715e-24
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            +YK++HPNNKSVAAVGKAGGDKWK +S AEKAPY AKAEKRK EYNKNI+AYN++ AEGP
Sbjct:   55 KYKKEHPNNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYNKNIQAYNKRLAEGP 114

[Close]

BLAST of DW043380 vs. P. persica 1.0 peptide
Match: ppa012955m ()

HSP 1 Score: 106.686 bits (265), Expect = 7.715e-24
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            +YK++HPNNKSVAAVGKAGGDKWK +S AEKAPY AKAEKRK EYNKNI+AYN++ AEGP
Sbjct:   55 KYKKEHPNNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYNKNIQAYNKRLAEGP 114

[Close]

BLAST of DW043380 vs. P. persica 1.0 peptide
Match: ppa011662m ()

HSP 1 Score: 106.686 bits (265), Expect = 7.715e-24
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            +YK++HPNNKSVAAVGKAGGDKWK +S AEKAPY AKAEKRK EYNKNI+AYN++ AEGP
Sbjct:  112 KYKKEHPNNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYNKNIQAYNKRLAEGP 171

[Close]

BLAST of DW043380 vs. P. persica 1.0 peptide
Match: ppa011596m ()

HSP 1 Score: 106.686 bits (265), Expect = 7.715e-24
Identity = 48/60 (80.00%), Postives = 55/60 (91.67%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            +YK++HPNNKSVAAVGKAGGDKWK +S AEKAPY AKAEKRK EYNKNI+AYN++ AEGP
Sbjct:  112 KYKKEHPNNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYNKNIQAYNKRLAEGP 171

[Close]

BLAST of DW043380 vs. P. persica 1.0 peptide
Match: ppa012972m ()

HSP 1 Score: 101.293 bits (251), Expect = 3.242e-22
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEG 195
            +YK++HPNNKSVAAVGKAGGDKWK +S AEKAPY AKAEKRKTEYNK ++AYN+  AEG
Sbjct:   55 KYKKEHPNNKSVAAVGKAGGDKWKSLSDAEKAPYVAKAEKRKTEYNKTMQAYNKSIAEG 113

[Close]

BLAST of DW043380 vs. P. persica 1.0 peptide
Match: ppa012331m ()

HSP 1 Score: 98.9821 bits (245), Expect = 1.609e-21
Identity = 44/55 (80.00%), Postives = 51/55 (92.73%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEK 183
            +YK++HPNNKSVAAVGKAGGDKWK +S AEKAPY AKAEKRK EYNKNI+AYN++
Sbjct:  112 KYKKEHPNNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYNKNIQAYNKR 166

[Close]

BLAST of DW043380 vs. P. persica 1.0 peptide
Match: ppa013451m ()

HSP 1 Score: 96.6709 bits (239), Expect = 7.984e-21
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNE 180
            +YK++HPNNKSVAAVGKAGGDKWK +S AEKAPY AKAEKRKTEYNK ++AYN+
Sbjct:   55 KYKKEHPNNKSVAAVGKAGGDKWKSLSDAEKAPYVAKAEKRKTEYNKTMQAYNK 108

[Close]

BLAST of DW043380 vs. P. persica 1.0 peptide
Match: ppa013567m ()

HSP 1 Score: 96.6709 bits (239), Expect = 7.984e-21
Identity = 43/54 (79.63%), Postives = 50/54 (92.59%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNE 180
            +YK++HPNNKSVAAVGKAGGDKWK +S AEKAPY AKAEKRKTEYNK ++AYN+
Sbjct:   55 KYKKEHPNNKSVAAVGKAGGDKWKSLSDAEKAPYVAKAEKRKTEYNKTMQAYNK 108

[Close]

BLAST of DW043380 vs. P. persica 1.0 peptide
Match: ppa007518m ()

HSP 1 Score: 87.0409 bits (214), Expect = 6.326e-18
Identity = 39/58 (67.24%), Postives = 48/58 (82.76%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEG 195
            +K+++PN K VAAVGKAGGDKWK +S AEKAPY+AKA KRK EY K ++AYN+KQ  G
Sbjct:  257 FKKENPNVKGVAAVGKAGGDKWKSLSDAEKAPYEAKAAKRKAEYEKQMKAYNKKQESG 314

[Close]

BLAST of DW043380 vs. P. persica 1.0 peptide
Match: ppa012424m ()

HSP 1 Score: 86.2705 bits (212), Expect = 1.079e-17
Identity = 38/57 (66.67%), Postives = 49/57 (85.96%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAE 192
            YK++HPN K+V+AVGKAGG+KWK MS AEKAPY+AKA KRK+EY K ++AYN K+ +
Sbjct:   75 YKQEHPNVKAVSAVGKAGGEKWKSMSHAEKAPYEAKAAKRKSEYEKLMKAYNNKEED 131

[Close]

BLAST of DW043380 vs. TrEMBL
Match: O49948|O49948_SOLTU (High mobility group protein OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.012e-21
Identity = 48/60 (80.00%), Postives = 52/60 (86.67%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGPA 201
            YKEKHPNNKSVA VGKAGGDKWKQ+S  EKAPYQAKAEKRK EY KN++AYN+K A G A
Sbjct:   54 YKEKHPNNKSVAVVGKAGGDKWKQLSDEEKAPYQAKAEKRKAEYQKNMDAYNKKLAAGDA 113

[Close]

BLAST of DW043380 vs. TrEMBL
Match: D7UDB2|D7UDB2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_122.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00013385001 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.367e-20
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEG 195
            +YKEKHP+NKSV+ VGKAGGDKWK MS AEKAPY AKAEKRK EY KN++AYN+KQAEG
Sbjct:   61 QYKEKHPSNKSVSVVGKAGGDKWKSMSEAEKAPYVAKAEKRKVEYEKNMKAYNKKQAEG 119

[Close]

BLAST of DW043380 vs. TrEMBL
Match: D7U469|D7U469_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_44.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00026642001 PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.367e-20
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            +YKEKHP NKSV+ VGKAGGDKWK +S AEKAPY AKAEKRKTEYNK+++AYN++ AEGP
Sbjct:   62 QYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKSMQAYNKRMAEGP 121

[Close]

BLAST of DW043380 vs. TrEMBL
Match: O04692|O04692_TOBAC (DNA-binding protein OS=Nicotiana tabacum GN=T231 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.785e-20
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQA 189
            YKEKHPNNKSVAAVGKAGGD WK++S AEKAPYQAKAEKRK EY KN++AYN KQA
Sbjct:   54 YKEKHPNNKSVAAVGKAGGDAWKKLSEAEKAPYQAKAEKRKAEYQKNMDAYNRKQA 109

[Close]

BLAST of DW043380 vs. TrEMBL
Match: Q4ZH67|Q4ZH67_CUCSA (High mobility group protein OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.859e-20
Identity = 46/59 (77.97%), Postives = 54/59 (91.53%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEG 195
            +YK++HPNNKSVAAVGKAGGDKWK MS AEKAPY  KAEKRKTEYNK+++AYN++ AEG
Sbjct:   55 QYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEG 113

[Close]

BLAST of DW043380 vs. TrEMBL
Match: B9GQ02|B9GQ02_POPTR (High mobility group family OS=Populus trichocarpa GN=HMGB901 PE=4 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.973e-19
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            +YK++HP NKSVAAVGKAGGDKWK +S AEKAPY AKA+KRK EY K ++AYN++QAEGP
Sbjct:   60 QYKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKADKRKVEYEKKMKAYNKEQAEGP 119

[Close]

BLAST of DW043380 vs. TrEMBL
Match: A9PHM9|A9PHM9_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.973e-19
Identity = 44/60 (73.33%), Postives = 53/60 (88.33%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            +YK++HP NKSVAAVGKAGGDKWK +S AEKAPY AKA+KRK EY K ++AYN++QAEGP
Sbjct:   60 QYKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKADKRKVEYEKKMKAYNKEQAEGP 119

[Close]

BLAST of DW043380 vs. TrEMBL
Match: Q40094|Q40094_IPONI (High mobility group protein 2 HMG2 OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.366e-19
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQA 189
            YKEKHPNNKSVAAVGKAGGDKWKQ++ AEKAP+ AKAEKRK EY K+++AYN KQA
Sbjct:   54 YKEKHPNNKSVAAVGKAGGDKWKQLTDAEKAPFIAKAEKRKQEYEKSMQAYNRKQA 109

[Close]

BLAST of DW043380 vs. TrEMBL
Match: B9H672|B9H672_POPTR (High mobility group family OS=Populus trichocarpa GN=HMGB915 PE=4 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.499e-19
Identity = 45/59 (76.27%), Postives = 51/59 (86.44%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEG 195
            +YKE HPNNKSVAAVGKAGGDKWK +S AEKAPY AKAEKRK EYNK++ AYN++ A G
Sbjct:   56 QYKESHPNNKSVAAVGKAGGDKWKSLSEAEKAPYAAKAEKRKFEYNKDMAAYNKRLAGG 114

[Close]

BLAST of DW043380 vs. TrEMBL
Match: Q9LM85|Q9LM85_ARATH (F2D10.18 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.279e-18
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            YKE+HP NKSVAAVGKAGG+KWK +S +EKAPY AKA+KRK EY KN++AYN+K  EGP
Sbjct:  574 YKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGP 632

HSP 2 Score: 90.8929 bits (224), Expect = 7.019e-17
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            +K+++P NKSVA VGKA GDKWK +S +EKAPY AKAEKRK EY KNI+AYN+K  EGP
Sbjct:  433 FKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGP 491

[Close]

BLAST of DW043380 vs. Vitis vinifera peptide
Match: GSVIVT01026642001 (assembled CDS)

HSP 1 Score: 103.219 bits (256), Expect = 7.305e-23
Identity = 46/60 (76.67%), Postives = 54/60 (90.00%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            +YKEKHP NKSV+ VGKAGGDKWK +S AEKAPY AKAEKRKTEYNK+++AYN++ AEGP
Sbjct:   62 QYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKSMQAYNKRMAEGP 121

[Close]

BLAST of DW043380 vs. Vitis vinifera peptide
Match: GSVIVT01013385001 (assembled CDS)

HSP 1 Score: 103.219 bits (256), Expect = 7.305e-23
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 1

Query:   19 RYKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEG 195
            +YKEKHP+NKSV+ VGKAGGDKWK MS AEKAPY AKAEKRK EY KN++AYN+KQAEG
Sbjct:   61 QYKEKHPSNKSVSVVGKAGGDKWKSMSEAEKAPYVAKAEKRKVEYEKNMKAYNKKQAEG 119

[Close]

BLAST of DW043380 vs. Vitis vinifera peptide
Match: GSVIVT01033966001 (assembled CDS)

HSP 1 Score: 78.9518 bits (193), Expect = 1.475e-15
Identity = 34/55 (61.82%), Postives = 47/55 (85.45%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQ 186
            +K+++PN K+V+AVGKAGG++WK +S AEKAPY+AKA K+K EY K + AYN+KQ
Sbjct:   74 FKKENPNVKAVSAVGKAGGERWKSLSEAEKAPYEAKAAKKKAEYEKIMNAYNKKQ 128

[Close]

BLAST of DW043380 vs. Vitis vinifera peptide
Match: GSVIVT01034361001 (assembled CDS)

HSP 1 Score: 64.6994 bits (156), Expect = 2.879e-11
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAE 192
            YKE +P++K+V+ V K GG+KWK M+  EK PY  KA + K EY+K +E YN +  E
Sbjct:  117 YKESNPDSKNVSVVAKEGGEKWKSMTDEEKKPYVDKAAELKAEYDKAMETYNAENGE 173

[Close]

BLAST of DW043380 vs. TAIR peptide
Match: AT1G20696.3 (| Symbols: HMGB3, NFD3, NFD03 | high mobility group B3 | chr1:7179825-7181170 FORWARD LENGTH=140)

HSP 1 Score: 96.6709 bits (239), Expect = 9.796e-21
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            YKE+HP NKSVAAVGKAGG+KWK +S +EKAPY AKA+KRK EY KN++AYN+K  EGP
Sbjct:   53 YKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGP 111

[Close]

BLAST of DW043380 vs. TAIR peptide
Match: AT1G20696.1 (| Symbols: HMGB3, NFD3, NFD03 | high mobility group B3 | chr1:7179825-7181174 FORWARD LENGTH=141)

HSP 1 Score: 96.6709 bits (239), Expect = 9.796e-21
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            YKE+HP NKSVAAVGKAGG+KWK +S +EKAPY AKA+KRK EY KN++AYN+K  EGP
Sbjct:   53 YKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGP 111

[Close]

BLAST of DW043380 vs. TAIR peptide
Match: AT1G20693.3 (| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mobility group B2 | chr1:7177282-7178487 FORWARD LENGTH=143)

HSP 1 Score: 90.8929 bits (224), Expect = 5.375e-19
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            +K+++P NKSVA VGKA GDKWK +S +EKAPY AKAEKRK EY KNI+AYN+K  EGP
Sbjct:   56 FKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGP 114

[Close]

BLAST of DW043380 vs. TAIR peptide
Match: AT1G20696.2 (| Symbols: HMGB3, NFD3, NFD03 | high mobility group B3 | chr1:7179825-7181193 FORWARD LENGTH=147)

HSP 1 Score: 90.8929 bits (224), Expect = 5.375e-19
Identity = 40/54 (74.07%), Postives = 48/54 (88.89%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEK 183
            YKE+HP NKSVAAVGKAGG+KWK +S +EKAPY AKA+KRK EY KN++AYN+K
Sbjct:   53 YKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKK 106

[Close]

BLAST of DW043380 vs. TAIR peptide
Match: AT1G20693.2 (| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mobility group B2 | chr1:7177282-7178487 FORWARD LENGTH=142)

HSP 1 Score: 90.8929 bits (224), Expect = 5.375e-19
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            +K+++P NKSVA VGKA GDKWK +S +EKAPY AKAEKRK EY KNI+AYN+K  EGP
Sbjct:   56 FKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGP 114

[Close]

BLAST of DW043380 vs. TAIR peptide
Match: AT1G20693.1 (| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mobility group B2 | chr1:7177282-7178487 FORWARD LENGTH=144)

HSP 1 Score: 90.8929 bits (224), Expect = 5.375e-19
Identity = 41/59 (69.49%), Postives = 49/59 (83.05%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEGP 198
            +K+++P NKSVA VGKA GDKWK +S +EKAPY AKAEKRK EY KNI+AYN+K  EGP
Sbjct:   56 FKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGP 114

[Close]

BLAST of DW043380 vs. TAIR peptide
Match: AT3G51880.4 (| Symbols: HMGB1 | high mobility group B1 | chr3:19247241-19248491 REVERSE LENGTH=161)

HSP 1 Score: 80.8777 bits (198), Expect = 5.563e-16
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEG 195
            +K+++PN K+V+AVGKAGG KWK MS AEKAPY+ KA KRK EY K ++AYN+   EG
Sbjct:   71 FKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEG 128

[Close]

BLAST of DW043380 vs. TAIR peptide
Match: AT3G51880.3 (| Symbols: HMGB1, NFD1 | high mobility group B1 | chr3:19247241-19248491 REVERSE LENGTH=178)

HSP 1 Score: 80.8777 bits (198), Expect = 5.563e-16
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEG 195
            +K+++PN K+V+AVGKAGG KWK MS AEKAPY+ KA KRK EY K ++AYN+   EG
Sbjct:   71 FKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEG 128

[Close]

BLAST of DW043380 vs. TAIR peptide
Match: AT3G51880.2 (| Symbols: HMGB1, NFD1 | high mobility group B1 | chr3:19247241-19248491 REVERSE LENGTH=185)

HSP 1 Score: 80.8777 bits (198), Expect = 5.563e-16
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEG 195
            +K+++PN K+V+AVGKAGG KWK MS AEKAPY+ KA KRK EY K ++AYN+   EG
Sbjct:   71 FKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEG 128

[Close]

BLAST of DW043380 vs. TAIR peptide
Match: AT3G51880.1 (| Symbols: HMGB1, NFD1 | high mobility group B1 | chr3:19247241-19248491 REVERSE LENGTH=178)

HSP 1 Score: 80.8777 bits (198), Expect = 5.563e-16
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 1

Query:   22 YKEKHPNNKSVAAVGKAGGDKWKQMSTAEKAPYQAKAEKRKTEYNKNIEAYNEKQAEG 195
            +K+++PN K+V+AVGKAGG KWK MS AEKAPY+ KA KRK EY K ++AYN+   EG
Sbjct:   71 FKKENPNVKAVSAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEG 128

The following BLAST results are available for this feature:

BLAST of DW043380 vs. DB:swissprot:display
BLAST of DW043380 vs. Populus trichocarpa peptide v2.0
BLAST of DW043380 vs. P. persica 1.0 peptide
BLAST of DW043380 vs. TrEMBL
BLAST of DW043380 vs. Vitis vinifera peptide
BLAST of DW043380 vs. TAIR peptide

BLAST of DW043380 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 5


Match Name	E-value	Identity	Description
HMGL_IPONI	2.212e-21	76.67	HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1	[more]
HMGL_SOYBN	2.990e-18	69.49	HMG1/2-like protein OS=Glycine max PE=2 SV=1	[more]
MNB1B_MAIZE	1.536e-14	64.29	DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=...	[more]
HMGL_WHEAT	3.421e-14	60.00	HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1	[more]
HMGL_VICFA	6.452e-13	60.00	HMG1/2-like protein OS=Vicia faba PE=2 SV=1	[more]

BLAST of DW043380 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 7


Match Name	E-value	Identity
POPTR_0002s01000.2	1.715e-21	73.33	[more]
POPTR_0002s01000.1	1.715e-21	73.33	[more]
POPTR_0005s10440.1	6.516e-21	76.27	[more]
POPTR_0005s27390.1	8.510e-21	71.67	[more]
POPTR_0010s19720.1	3.346e-17	67.27	[more]
POPTR_0008s06730.2	8.243e-16	63.64	[more]
POPTR_0008s06730.1	8.243e-16	63.64	[more]

BLAST of DW043380 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 10


Match Name	E-value	Identity
ppa012962m	7.715e-24	80.00	[more]
ppa012955m	7.715e-24	80.00	[more]
ppa011662m	7.715e-24	80.00	[more]
ppa011596m	7.715e-24	80.00	[more]
ppa012972m	3.242e-22	77.97	[more]
ppa012331m	1.609e-21	80.00	[more]
ppa013451m	7.984e-21	79.63	[more]
ppa013567m	7.984e-21	79.63	[more]
ppa007518m	6.326e-18	67.24	[more]
ppa012424m	1.079e-17	66.67	[more]

BLAST of DW043380 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
O49948\|O49948_SOLTU	8.012e-21	80.00	High mobility group protein OS=Solanum tuberosum P...	[more]
D7UDB2\|D7UDB2_VITVI	1.367e-20	79.66	Whole genome shotgun sequence of line PN40024, sca...	[more]
D7U469\|D7U469_VITVI	1.367e-20	76.67	Whole genome shotgun sequence of line PN40024, sca...	[more]
O04692\|O04692_TOBAC	1.785e-20	83.93	DNA-binding protein OS=Nicotiana tabacum GN=T231 P...	[more]
Q4ZH67\|Q4ZH67_CUCSA	8.859e-20	77.97	High mobility group protein OS=Cucumis sativus PE=...	[more]
B9GQ02\|B9GQ02_POPTR	1.973e-19	73.33	High mobility group family OS=Populus trichocarpa ...	[more]
A9PHM9\|A9PHM9_POPTR	1.973e-19	73.33	Putative uncharacterized protein OS=Populus tricho...	[more]
Q40094\|Q40094_IPONI	3.366e-19	80.36	High mobility group protein 2 HMG2 OS=Ipomoea nil ...	[more]
B9H672\|B9H672_POPTR	7.499e-19	76.27	High mobility group family OS=Populus trichocarpa ...	[more]
Q9LM85\|Q9LM85_ARATH	1.279e-18	72.88	F2D10.18 OS=Arabidopsis thaliana PE=4 SV=1	[more]

BLAST of DW043380 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 4


Match Name	E-value	Identity	Description
GSVIVT01026642001	7.305e-23	76.67	assembled CDS	[more]
GSVIVT01013385001	7.305e-23	79.66	assembled CDS	[more]
GSVIVT01033966001	1.475e-15	61.82	assembled CDS	[more]
GSVIVT01034361001	2.879e-11	49.12	assembled CDS	[more]

BLAST of DW043380 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT1G20696.3	9.796e-21	72.88	\| Symbols: HMGB3, NFD3, NFD03 \| high mobility grou...	[more]
AT1G20696.1	9.796e-21	72.88	\| Symbols: HMGB3, NFD3, NFD03 \| high mobility grou...	[more]
AT1G20693.3	5.375e-19	69.49	\| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 \| high m...	[more]
AT1G20696.2	5.375e-19	74.07	\| Symbols: HMGB3, NFD3, NFD03 \| high mobility grou...	[more]
AT1G20693.2	5.375e-19	69.49	\| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 \| high m...	[more]
AT1G20693.1	5.375e-19	69.49	\| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 \| high m...	[more]
AT3G51880.4	5.563e-16	62.07	\| Symbols: HMGB1 \| high mobility group B1 \| chr3:1...	[more]
AT3G51880.3	5.563e-16	62.07	\| Symbols: HMGB1, NFD1 \| high mobility group B1 \| ...	[more]
AT3G51880.2	5.563e-16	62.07	\| Symbols: HMGB1, NFD1 \| high mobility group B1 \| ...	[more]
AT3G51880.1	5.563e-16	62.07	\| Symbols: HMGB1, NFD1 \| high mobility group B1 \| ...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000910	High mobility group, HMG1/HMG2	GENE3D	1.10.30.10	no description	coord: 7..58 score: 1.8
IPR000910	High mobility group, HMG1/HMG2	PFAM	PF00505	HMG_box	coord: 8..59 score: 3.6
IPR000910	High mobility group, HMG1/HMG2	SMART	SM00398	no description	coord: 4..60 score: 7.8
IPR000910	High mobility group, HMG1/HMG2	PROFILE	PS50118	HMG_BOX_2	coord: 1..59 score: 13
IPR009071	High mobility group, superfamily	SUPERFAMILY	47095	HMG-box	coord: 7..58 score: 6.1
None	No IPR available	PANTHER	PTHR13711	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	coord: 7..64 score: 4.7
None	No IPR available	SEG	seg	seg	coord: 68..93 score
None	No IPR available	SEG	seg	seg	coord: 49..64 score
None	No IPR available	SEG	seg	seg	coord: 20..39 score

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DW043380 ID=DW043380; Name=DW043380; organism=Vaccinium corymbosum; type=EST; length=585bp
TCGAGCGGCCGCCCGGGCAGGTACAAAGAAAAGCATCCCAACAACAAATC
CGTTGCTGCCGTTGGGAAAGCTGGAGGAGATAAATGGAAGCAAATGTCTA
CAGCTGAAAAAGCTCCCTATCAGGCGAAAGCAGAGAAAAGGAAGACTGAA
TATAACAAGAACATTGAAGCTTATAATGAGAAACAGGCTGAGGGACCAGC
TGAGGATGAAGAATCTGACAAGTCTGTGGTGAATGACGAGGATGACGATG
AGAGTGGAGAGGAGGAAGATGATGACGAGTAGGTGGAATGTAGTTAGGGT
GCAGTTTGAGTTGAAAGACTGGGGCAAACTCTCGTATGATTTTCTAGAAT
ATTGTGGCTATTCAATTTTGCCTCCAGTCCCACTTGATAATAGTTGTCTC
GTTTTTAATTCGGTAAGTTAAAAACAAAGCAGTTTCAGGTACACATAACA
CAACAAAGACCCCCACCAAAAGTCACCATGAAACACCATGGGCAACTTTA
TTTTAGGAAGACCCAGCAAGAAGAAGCTTCTTAATACAAATTTAAAGAAC
CTCCCATTACCACCAAACCCAGGACCCGAAAACTT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR000910	High mobility group, HMG1/HMG2
IPR009071	HMG_box_dom
noIPR	unintegrated