CV090471

EST Overview
NameCV090471
Unique NameCV090471
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length794
Libraries
Library NameType
LIBEST_014530 cDNA cold acclimated Bluecrop librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL2011-01-18
InterProScan analysis for Vaccinium corymbosum unigene v12011-01-18
Homology
BLAST of CV090471 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0018s10030.1 ()

HSP 1 Score: 60.4622 bits (145), Expect = 1.455e-9
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2
Query:  422 LTNLEH--LIVRIFDDESLLGLTSLLEAAPSLRKFTLELRPYXXXXXXXXXXXXXXXXXXXXXXPHQCLKDVEMLGFVGGASDLEIVMYLLQNTINLEKIVIDPHE 733
            L NL+   L + +FD+E LL   SL+EA+PSL + +L+LRP                        HQ LK VE++GF     DLE+ + L++  ++L+K++IDP +
Sbjct:  191 LNNLKQMQLTLDVFDEEGLLYSRSLIEASPSLHRLSLQLRP------RPKEMFGEMTWRSIGGQKHQSLKVVEIVGFTDLTCDLELALDLVKYAMSLQKLIIDPRQ 290          
BLAST of CV090471 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0004s23350.1 ()

HSP 1 Score: 53.9138 bits (128), Expect = 1.362e-7
Identity = 37/109 (33.94%), Postives = 57/109 (52.29%), Query Frame = -2
Query:  431 IQVPQLTNLEHL--IVRIFD-DESLLGLTSLLEAAPSLRKFTLELRPYXXXXXXXXXXXXXXXXXXXXXXPHQCLKDVEMLGFVGGASDLEIVMYLLQNTINLEKIVID 748
            ++VP LTNL+ L  I  + D D + L +TSL+EAA  L++F  ++                         PHQ LK VE+L F G A  +E+ +Y+++N + LE I+ D
Sbjct:    5 LEVPVLTNLKQLKFIADVIDRDPTFLAITSLIEAASFLQRFIFQV----------LVLKLLTFGEENKRCPHQHLKVVEILEFTGEAVKVELALYIIENAVVLENIIFD 103          
BLAST of CV090471 vs. TrEMBL
Match: B9RAY0|B9RAY0_RICCO (Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1509630 PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.350e-8
Identity = 40/107 (37.38%), Postives = 58/107 (54.21%), Query Frame = -2
Query:  422 PQLTNLEHLIVRI-FDDESLLGLTSLLEAAPSLRKFTLELRPYXXXXXXXXXXXXXXXXXXXXXXPHQCLKDVEMLGFVGGASDLEIVMYLLQNTINLEKIVIDPHE 739
            P+LTNL HL  +  +D  S+L +  L++++P L KFTLEL                         PHQ LK VE++GF+GGA + E +M+ L N   LEKI++ P +
Sbjct:  323 PELTNLRHLGFKTEYDICSILAVRLLIKSSPLLNKFTLELAD-------GSRCQIKRRVRTGINCPHQNLKVVEIVGFIGGAVEYEFIMFFLDNASALEKIILRPRD 422          
BLAST of CV090471 vs. TrEMBL
Match: B9ILZ1|B9ILZ1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_779433 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.989e-7
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = -2
Query:  422 LTNLEH--LIVRIFDDESLLGLTSLLEAAPSLRKFTLELRPYXXXXXXXXXXXXXXXXXXXXXXPHQCLKDVEMLGFVGGASDLEIVMYLLQNTINLEKIVIDPHE 733
            L NL+   L + +FD+E LL   SL+EA+PSL + +L+LRP                        HQ LK VE++GF     DLE+ + L++  ++L+K++IDP +
Sbjct:  191 LNNLKQMQLTLDVFDEEGLLYSRSLIEASPSLHRLSLQLRP------RPKEMFGEMTWRSIGGQKHQSLKVVEIVGFTDLTCDLELALDLVKYAMSLQKLIIDPRQ 290          
The following BLAST results are available for this feature:
BLAST of CV090471 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
POPTR_0018s10030.11.455e-934.91[more]
POPTR_0004s23350.11.362e-733.94[more]
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BLAST of CV090471 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
B9RAY0|B9RAY0_RICCO2.350e-837.38Ubiquitin-protein ligase, putative OS=Ricinus comm... [more]
B9ILZ1|B9ILZ1_POPTR1.989e-734.91Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013596FBDPFAMPF08387FBDcoord: 80..120
score: 6.4
NoneNo IPR availableSEGsegsegcoord: 61..83
score: NAcoord: 127..143
score: NAcoord: 146..159
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CV090471 ID=CV090471; Name=CV090471; organism=Vaccinium corymbosum; type=EST; length=794bp
TGATCCCATCAAAAGAGGACGCTCATTGTGATCAAACTTGTCCAAATTAT
CCACTGTTCCAGAACAAAAACATATATAGGAGATAAAAACAGGAAATTAG
TTTCCGAAGCACCAAAAAAAAAGATAAAAACAGGAAATCATGGGGCCCAT
CACAACACCAATGTCGTAACAGGGGCCACCTCCCGCAGATCAAAAGAAAC
CATGAACTGTAAATTCAGATCTCAGTCTAACTGCAAACTAGTAAGGTAGT
ACAATAATTAACTGCCACAAGAAAATAATTAGACACGAGACTTTTGCGAT
AACTCATACAGTACTAAAGAACAACTAATTTAACTCCAGGAGGTAATTTT
ACTTCAAGCTGGTGAGCACGCTTTCGTGCTGCCTCTTTCTCCTTGCTTTC
CTTACGTCTCGATTCTAATGACTCGTGAGGATCAATGACTATCTTCTCAA
GATTGATGGTATTTTGAAGTAGATACATCACAATCTCTAGATCAGAGGCA
CCCCCAACAAAGCCTAACATTTCCACATCCTTGAGGCATTGATGGGGACG
ACGAGGCTTCAAAACCTTTGGCCTTCTTACCATCAAAGACCGCCTTCTTA
CCATCAAAGACCGATACGGACGCAACTCCAATGTAAATTTACGCAACGAC
GGAGCTGCTTCTAATAGAGAAGTAAGACCAAGAAGGCTTTCATCATCAAA
AATCCTCACTATTAGATGCTCAAGATTTGTTAACTGAGGAACTTGGATCT
CACTGNTCCCCTGCAAGTACATCTCCNATTCAAGAGTCTCTATC
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
IPR013596FBD
noIPRunintegrated