CV090497 | GDV

EST Overview


Name	CV090497
Unique Name	CV090497
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	504

Libraries


Library Name	Type
LIBEST_014530 cDNA cold acclimated Bluecrop library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Swissprot	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide	2011-02-10
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18
KEGG analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of CV090497 vs. DB:swissprot:display
Match: LSM3_MOUSE (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3 PE=2 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 8.913e-25
Identity = 56/89 (62.92%), Postives = 65/89 (73.03%), Query Frame = 3

Query:   24 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLR 290
            + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG                    ++ KR IP LFVRGDGV+LV+PPLR
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of CV090497 vs. DB:swissprot:display
Match: LSM3_HUMAN (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 8.913e-25
Identity = 56/89 (62.92%), Postives = 65/89 (73.03%), Query Frame = 3

Query:   24 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLR 290
            + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG                    ++ KR IP LFVRGDGV+LV+PPLR
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of CV090497 vs. DB:swissprot:display
Match: LSM3_DICDI (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 8.913e-25
Identity = 59/97 (60.82%), Postives = 65/97 (67.01%), Query Frame = 3

Query:    6 MGSEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLRTA 296
            M   E+  V+EPLDLIRLSLDERI+VK+R DRELRGKLHAYDQHLNMIL                     R  KR I  LFVRGDGVIL+SPPLRT+
Sbjct:    1 MDKREEGTVEEPLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETDEEIIRNIKRNIKMLFVRGDGVILISPPLRTS 97

[Close]

BLAST of CV090497 vs. DB:swissprot:display
Match: LSM3_BOVIN (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3 PE=3 SV=3)

HSP 1 Score: 112.849 bits (281), Expect = 8.913e-25
Identity = 56/89 (62.92%), Postives = 65/89 (73.03%), Query Frame = 3

Query:   24 SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLR 290
            + V+EPLDLIRLSLDERIYVK+R+DRELRG+LHAYDQHLNMILG                    ++ KR IP LFVRGDGV+LV+PPLR
Sbjct:   12 NTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of CV090497 vs. DB:swissprot:display
Match: LSM3_SCHPO (Probable U6 snRNA-associated Sm-like protein LSm3 OS=Schizosaccharomyces pombe GN=lsm3 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.628e-18
Identity = 46/90 (51.11%), Postives = 56/90 (62.22%), Query Frame = 3

Query:   15 EEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPP 284
            E   AV EPLDL+RLSLDE +YVKLR DREL G+LHAYD+HLNM+LG                    +  ++    LFVRGD VIL++PP
Sbjct:    2 ESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPP 91

[Close]

BLAST of CV090497 vs. DB:swissprot:display
Match: LSM3_YEAST (U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces cerevisiae GN=LSM3 PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.995e-8
Identity = 31/85 (36.47%), Postives = 46/85 (54.12%), Query Frame = 3

Query:   30 VKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPP 284
            ++ PLDL++L+LDER+Y+KLR  R L G L A+D H N++L                       ++R    +F+RGD V L+S P
Sbjct:    1 METPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLS------DAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTP 79

[Close]

BLAST of CV090497 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0002s06940.1 ()

HSP 1 Score: 138.272 bits (347), Expect = 2.474e-33
Identity = 72/97 (74.23%), Postives = 75/97 (77.32%), Query Frame = 3

Query:    6 MGSEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLRTA 296
            M SEE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG                    RA +RT+PFLFVRGDGVILVSPPLRTA
Sbjct:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRATRRTVPFLFVRGDGVILVSPPLRTA 97

[Close]

BLAST of CV090497 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0005s21380.1 ()

HSP 1 Score: 136.732 bits (343), Expect = 7.198e-33
Identity = 71/97 (73.20%), Postives = 74/97 (76.29%), Query Frame = 3

Query:    6 MGSEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLRTA 296
            M SEE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG                    R  +RT+PFLFVRGDGVILVSPPLRTA
Sbjct:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97

[Close]

BLAST of CV090497 vs. P. persica 1.0 peptide
Match: ppa013901m ()

HSP 1 Score: 135.961 bits (341), Expect = 8.906e-33
Identity = 71/97 (73.20%), Postives = 73/97 (75.26%), Query Frame = 3

Query:    6 MGSEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLRTA 296
            M SEE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG                    R  KR +PFLFVRGDGVILVSPPLRTA
Sbjct:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTSIEIDDETYEEIVRTTKRNVPFLFVRGDGVILVSPPLRTA 97

[Close]

BLAST of CV090497 vs. P. persica 1.0 peptide
Match: ppa014013m ()

HSP 1 Score: 97.4413 bits (241), Expect = 3.510e-21
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 3

Query:    6 MGSEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG 155
            M SEE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG
Sbjct:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG 50

[Close]

BLAST of CV090497 vs. P. persica 1.0 peptide
Match: ppa014009m ()

HSP 1 Score: 97.4413 bits (241), Expect = 3.510e-21
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 3

Query:    6 MGSEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG 155
            M SEE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG
Sbjct:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG 50

[Close]

BLAST of CV090497 vs. P. persica 1.0 peptide
Match: ppa013907m ()

HSP 1 Score: 97.4413 bits (241), Expect = 3.510e-21
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 3

Query:    6 MGSEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG 155
            M SEE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG
Sbjct:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG 50

[Close]

BLAST of CV090497 vs. TrEMBL
Match: B9GTJ5|B9GTJ5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_643482 PE=4 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.469e-31
Identity = 72/97 (74.23%), Postives = 75/97 (77.32%), Query Frame = 3

Query:    6 MGSEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLRTA 296
            M SEE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG                    RA +RT+PFLFVRGDGVILVSPPLRTA
Sbjct:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRATRRTVPFLFVRGDGVILVSPPLRTA 97

[Close]

BLAST of CV090497 vs. TrEMBL
Match: C6SWG5|C6SWG5_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.182e-31
Identity = 71/97 (73.20%), Postives = 74/97 (76.29%), Query Frame = 3

Query:    6 MGSEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLRTA 296
            M +EE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG                    R  KRT+PFLFVRGDGVILVSPPLRTA
Sbjct:    1 MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTA 97

[Close]

BLAST of CV090497 vs. TrEMBL
Match: B9T2G3|B9T2G3_RICCO (Snrnp sm protein, putative OS=Ricinus communis GN=RCOM_0453880 PE=4 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.182e-31
Identity = 71/97 (73.20%), Postives = 74/97 (76.29%), Query Frame = 3

Query:    6 MGSEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLRTA 296
            M +EE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG                    R  KRT+PFLFVRGDGVILVSPPLRTA
Sbjct:    1 MATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRTA 97

[Close]

BLAST of CV090497 vs. TrEMBL
Match: B9H7R8|B9H7R8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_831544 PE=4 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.182e-31
Identity = 71/97 (73.20%), Postives = 74/97 (76.29%), Query Frame = 3

Query:    6 MGSEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLRTA 296
            M SEE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG                    R  +RT+PFLFVRGDGVILVSPPLRTA
Sbjct:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA 97

[Close]

BLAST of CV090497 vs. TrEMBL
Match: C6SZU6|C6SZU6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.729e-30
Identity = 70/97 (72.16%), Postives = 73/97 (75.26%), Query Frame = 3

Query:    6 MGSEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLRTA 296
            M +EE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG                    R  KRT+PFLFVRGDGVILVSPPLR A
Sbjct:    1 MSTEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRAA 97

[Close]

BLAST of CV090497 vs. TrEMBL
Match: B8LNL7|B8LNL7_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 7.941e-30
Identity = 68/97 (70.10%), Postives = 74/97 (76.29%), Query Frame = 3

Query:    6 MGSEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLRTA 296
            M +EEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG                    + +KR +P+LFVRGDGVILVSPPLRT+
Sbjct:    1 MATEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITTVEIDDETYEEIVKTSKRVVPYLFVRGDGVILVSPPLRTS 97

[Close]

BLAST of CV090497 vs. TrEMBL
Match: Q5N9F1|Q5N9F1_ORYSJ (Os01g0866700 protein OS=Oryza sativa subsp. japonica GN=P0505D12.39 PE=4 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.037e-29
Identity = 70/95 (73.68%), Postives = 72/95 (75.79%), Query Frame = 3

Query:   12 SEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLRTA 296
            +EE+ AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG                    R  KRTIPFLFVRGDGVILVSPPLRTA
Sbjct:   10 AEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA 104

[Close]

BLAST of CV090497 vs. TrEMBL
Match: C5XQM8|C5XQM8_SORBI (Putative uncharacterized protein Sb03g040930 OS=Sorghum bicolor GN=Sb03g040930 PE=4 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.037e-29
Identity = 70/95 (73.68%), Postives = 72/95 (75.79%), Query Frame = 3

Query:   12 SEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLRTA 296
            +EE+ AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG                    R  KRTIPFLFVRGDGVILVSPPLRTA
Sbjct:    4 AEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA 98

[Close]

BLAST of CV090497 vs. TrEMBL
Match: B4FPJ2|B4FPJ2_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.037e-29
Identity = 70/95 (73.68%), Postives = 72/95 (75.79%), Query Frame = 3

Query:   12 SEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLRTA 296
            +EE+ AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG                    R  KRTIPFLFVRGDGVILVSPPLRTA
Sbjct:    4 AEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVEIDDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA 98

[Close]

BLAST of CV090497 vs. TrEMBL
Match: A2WXB5|A2WXB5_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_04561 PE=4 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.037e-29
Identity = 70/95 (73.68%), Postives = 72/95 (75.79%), Query Frame = 3

Query:   12 SEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLRTA 296
            +EE+ AVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG                    R  KRTIPFLFVRGDGVILVSPPLRTA
Sbjct:   10 AEEEIAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTIPFLFVRGDGVILVSPPLRTA 104

[Close]

BLAST of CV090497 vs. Vitis vinifera peptide
Match: GSVIVT01034520001 (assembled CDS)

HSP 1 Score: 97.4413 bits (241), Expect = 3.018e-21
Identity = 48/50 (96.00%), Postives = 49/50 (98.00%), Query Frame = 3

Query:    6 MGSEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG 155
            M SEE+SAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG
Sbjct:    1 MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILG 50

[Close]

BLAST of CV090497 vs. TAIR peptide
Match: AT1G76860.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr1:28854594-28855637 REVERSE LENGTH=98)

HSP 1 Score: 128.257 bits (321), Expect = 2.263e-30
Identity = 67/97 (69.07%), Postives = 71/97 (73.20%), Query Frame = 3

Query:    6 MGSEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLRTA 296
            M  EE++ V+EPLDLIRLSLDERIYVKLRSDRELRGKLHA+DQHLNMILG                    R  KRTI FLFVRGDGVILVSPPLRTA
Sbjct:    1 MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRTA 97

[Close]

BLAST of CV090497 vs. TAIR peptide
Match: AT1G21190.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr1:7419989-7420856 REVERSE LENGTH=97)

HSP 1 Score: 127.872 bits (320), Expect = 2.955e-30
Identity = 65/96 (67.71%), Postives = 71/96 (73.96%), Query Frame = 3

Query:    6 MGSEEDSAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGXXXXXXXXXXXXXXXXXXXXRANKRTIPFLFVRGDGVILVSPPLRT 293
            M  EED+ V+EPLDLIRLS++ERIYVKLRSDRELRGKLHA+DQHLNMILG                    R  KRT+PFLFVRGDGVILVSPPLRT
Sbjct:    1 MSVEEDATVREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLRT 96

The following BLAST results are available for this feature:

BLAST of CV090497 vs. DB:swissprot:display
BLAST of CV090497 vs. Populus trichocarpa peptide v2.0
BLAST of CV090497 vs. P. persica 1.0 peptide
BLAST of CV090497 vs. TrEMBL
BLAST of CV090497 vs. Vitis vinifera peptide
BLAST of CV090497 vs. TAIR peptide

BLAST of CV090497 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 6


Match Name	E-value	Identity	Description
LSM3_MOUSE	8.913e-25	62.92	U6 snRNA-associated Sm-like protein LSm3 OS=Mus mu...	[more]
LSM3_HUMAN	8.913e-25	62.92	U6 snRNA-associated Sm-like protein LSm3 OS=Homo s...	[more]
LSM3_DICDI	8.913e-25	60.82	Probable U6 snRNA-associated Sm-like protein LSm3 ...	[more]
LSM3_BOVIN	8.913e-25	62.92	U6 snRNA-associated Sm-like protein LSm3 OS=Bos ta...	[more]
LSM3_SCHPO	1.628e-18	51.11	Probable U6 snRNA-associated Sm-like protein LSm3 ...	[more]
LSM3_YEAST	1.995e-8	36.47	U6 snRNA-associated Sm-like protein LSm3 OS=Saccha...	[more]

BLAST of CV090497 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
POPTR_0002s06940.1	2.474e-33	74.23		[more]
POPTR_0005s21380.1	7.198e-33	73.20		[more]

BLAST of CV090497 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 4


Match Name	E-value	Identity
ppa013901m	8.906e-33	73.20	[more]
ppa014013m	3.510e-21	96.00	[more]
ppa014009m	3.510e-21	96.00	[more]
ppa013907m	3.510e-21	96.00	[more]

BLAST of CV090497 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
B9GTJ5\|B9GTJ5_POPTR	2.469e-31	74.23	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
C6SWG5\|C6SWG5_SOYBN	7.182e-31	73.20	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9T2G3\|B9T2G3_RICCO	7.182e-31	73.20	Snrnp sm protein, putative OS=Ricinus communis GN=...	[more]
B9H7R8\|B9H7R8_POPTR	7.182e-31	73.20	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
C6SZU6\|C6SZU6_SOYBN	2.729e-30	72.16	Putative uncharacterized protein OS=Glycine max PE...	[more]
B8LNL7\|B8LNL7_PICSI	7.941e-30	70.10	Putative uncharacterized protein OS=Picea sitchens...	[more]
Q5N9F1\|Q5N9F1_ORYSJ	1.037e-29	73.68	Os01g0866700 protein OS=Oryza sativa subsp. japoni...	[more]
C5XQM8\|C5XQM8_SORBI	1.037e-29	73.68	Putative uncharacterized protein Sb03g040930 OS=So...	[more]
B4FPJ2\|B4FPJ2_MAIZE	1.037e-29	73.68	Putative uncharacterized protein OS=Zea mays PE=4 ...	[more]
A2WXB5\|A2WXB5_ORYSI	1.037e-29	73.68	Putative uncharacterized protein OS=Oryza sativa s...	[more]

BLAST of CV090497 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1


Match Name	E-value	Identity	Description
GSVIVT01034520001	3.018e-21	96.00	assembled CDS	[more]

BLAST of CV090497 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT1G76860.1	2.263e-30	69.07	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]
AT1G21190.1	2.955e-30	67.71	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	Like-Sm ribonucleoprotein (LSM) domain	PFAM	PF01423	LSM	coord: 18..93 score: 3.4
IPR006649	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	SMART	SM00651	no description	coord: 15..93 score: 5.8
IPR010920	Like-Sm ribonucleoprotein (LSM)-related domain	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 11..94 score: 2.2
None	No IPR available	GENE3D	2.30.30.100	no description	coord: 12..94 score: 1.6
None	No IPR available	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 1..97 score: 1.3
None	No IPR available	SEG	seg	seg	coord: 52..71 score
None	No IPR available	SEG	seg	seg	coord: 47..61 score

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV090497 ID=CV090497; Name=CV090497; organism=Vaccinium corymbosum; type=EST; length=504bp
AGAGAATGGGGAGCGAAGAAGATAGCGCAGTGAAAGAACCGCTCGATCTC
ATCAGACTCAGTCTCGATGAGAGAATCTACGTCAAGCTTCGTTCTGATCG
GGAACTCCGTGGAAAGCTCCACGCGTACGACCAGCATTTAAATATGATAC
TAGGAGATGTTGAAGAAGTTGTAACCACGGTGGAGATTGATGATGAGACC
TATGAGGAGATAGTTCGGGCAAACAAGCGGACAATCCCTTTTCTTTTCGT
ACGGGGAGATGGGGTGATACTGGTTTCTCCACCTCTGCGGACAGCTTAAC
GTAGACAATCAGTGCACATTTGGCTGGATGGTATCATGTTTGCATCAAAT
GTTAGGCTCTTGCTGTTATTAGTTGGTTTACAATGATTTCCTTTGACTTA
AGATTATGTATTAATAGACTGTAAAGCAACTCGAATACTGAATTGCAGCT
TAGTGTGTTTCTGTAAGGGTGAAAGCCTTTATAATTGTTGCAGGCTCTTT
TAGC

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **KEGG ORTHOLOGY**
Term	Definition
K12622	LSM3; U6 snRNA-associated Sm-like protein LSm3

Vocabulary: **KEGG PATHWAY**
Term	Definition
ko03020	RNA polymerase

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	Sm_dom_euk/arc
IPR006649	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type
IPR010920	LSM_dom_sf
noIPR	unintegrated