HO054813
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of HO054813 vs. DB:swissprot:display
Match: HB2D_MOUSE (H-2 class II histocompatibility antigen, A-D beta chain OS=Mus musculus GN=H2-Ab1 PE=1 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 4.600e-8 Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = -2 Query: 72 NFQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG-----TRDRLPPAKLYPNFYSQPHIQERKRAGVDTS 284 +F QFK CY+TNGT R+RLV I+NR++ +D++ G T P A+ + SQP I ER RA VDT+ Sbjct: 33 HFVVQFKGECYYTNGTQRIRLVTRYIYNREEYVRYDSDVGEYRAVTELGRPDAEYW---NSQPEILERTRAEVDTA 105
BLAST of HO054813 vs. DB:swissprot:display
Match: DQB1_HUMAN (HLA class II histocompatibility antigen, DQ beta 1 chain OS=Homo sapiens GN=HLA-DQB1 PE=1 SV=2) HSP 1 Score: 55.0694 bits (131), Expect = 1.338e-7 Identity = 33/74 (44.59%), Postives = 42/74 (56.76%), Query Frame = -2 Query: 75 NFQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNN----RGTRDRLPPAKLYPNFYSQPHIQERKRAGVDT 284 +F QFKA CYFTNGT+RVR V I+NR++ D++ R PP Y N SQ + ER RA +DT Sbjct: 38 DFVYQFKAMCYFTNGTERVRYVTRYIYNREEYARFDSDVEVYRAVTPLGPPDAEYWN--SQKEVLERTRAELDT 109
BLAST of HO054813 vs. DB:swissprot:display
Match: HB2A_MOUSE (H-2 class II histocompatibility antigen, A beta chain OS=Mus musculus GN=H2-Ab1 PE=1 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 8.675e-7 Identity = 31/74 (41.89%), Postives = 41/74 (55.41%), Query Frame = -2 Query: 75 NFQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRGTRDRLP----PAKLYPNFYSQPHIQERKRAGVDT 284 +F QF CYFTNGT R+R V I+NR++ +D++ G + P Y N SQP I ER RA +DT Sbjct: 33 HFVYQFMGECYFTNGTQRIRYVTRYIYNREEYVRYDSDVGEHRAVTELGRPDAEYWN--SQPEILERTRAELDT 104
BLAST of HO054813 vs. TrEMBL
Match: Q671K8|Q671K8_9CHAR (MHC class II antigen B (Fragment) OS=Gallinago media PE=4 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 2.637e-9 Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = -2 Query: 75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG--TRDRLPPAKLYPNFYSQPHIQERKRAGVDT 281 FQ QFK CYF+NGT+RVRLV LI+NR+Q D++ G D F SQP + ERKRA VDT Sbjct: 2 FQFQFKGDCYFSNGTERVRLVARLIYNREQYAHFDSDLGYFVADTPLGKPTADYFNSQPEVLERKRAAVDT 72
BLAST of HO054813 vs. TrEMBL
Match: Q671K6|Q671K6_9CHAR (MHC class II antigen B (Fragment) OS=Gallinago media PE=4 SV=1) HSP 1 Score: 65.0846 bits (157), Expect = 2.637e-9 Identity = 37/71 (52.11%), Postives = 43/71 (60.56%), Query Frame = -2 Query: 75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG--TRDRLPPAKLYPNFYSQPHIQERKRAGVDT 281 FQ QFKA CYF+NGT+RVRLV I+NR+Q D++ G D F SQP I ERKRA VDT Sbjct: 2 FQFQFKADCYFSNGTERVRLVARYIYNREQYAHFDSDLGHYVADTPLGKPTADYFNSQPEILERKRAAVDT 72
BLAST of HO054813 vs. TrEMBL
Match: Q6IVH5|Q6IVH5_9CHAR (MHC class II antigen B (Fragment) OS=Gallinago media PE=4 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 3.444e-9 Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = -2 Query: 75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG--TRDRLPPAKLYPNFYSQPHIQERKRAGVDT 281 FQ QFKA CYF+NGT+RVRLV I+NR+Q D++ G D F SQP + ERKRA VDT Sbjct: 2 FQFQFKADCYFSNGTERVRLVARYIYNREQYAHFDSDLGHYVADTPLGKPTADYFNSQPEVLERKRAAVDT 72
BLAST of HO054813 vs. TrEMBL
Match: C1JEL7|C1JEL7_9AVES (MHC class II antigen (Fragment) OS=Pachyptila belcheri GN=Pabe-DAB1 PE=4 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 3.444e-9 Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = -2 Query: 75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG--TRDRLPPAKLYPNFYSQPHIQERKRAGVDT 281 FQ+ FK CYFTNGT+RVRLVV I+NRQQ D++ G D + ++ SQ I ERKRA VDT Sbjct: 2 FQDMFKGDCYFTNGTERVRLVVRYIYNRQQYAHFDSDVGHFVADTPLGESIAKSWNSQTDIVERKRAAVDT 72
BLAST of HO054813 vs. TrEMBL
Match: C1JEJ5|C1JEJ5_9AVES (MHC class II antigen (Fragment) OS=Pachyptila belcheri GN=Pabe-DAB1 PE=4 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 4.499e-9 Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = -2 Query: 75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG--TRDRLPPAKLYPNFYSQPHIQERKRAGVDT 281 FQ+ FK CYFTNGT+RVRLVV I+NRQQ D++ G D + ++ SQ I ERKRA VDT Sbjct: 2 FQDMFKGDCYFTNGTERVRLVVRYIYNRQQYVHFDSDVGHFVADTPLGESIAKSWNSQTDIVERKRAAVDT 72
BLAST of HO054813 vs. TrEMBL
Match: Q6IVH7|Q6IVH7_9CHAR (MHC class II antigen B (Fragment) OS=Gallinago media PE=4 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 5.875e-9 Identity = 38/74 (51.35%), Postives = 45/74 (60.81%), Query Frame = -2 Query: 75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG-----TRDRLPPAKLYPNFYSQPHIQERKRAGVDT 281 FQ QFKA CYF+NGT+RVRLV I+NR+Q D++ G T P A F SQP + ERKRA VDT Sbjct: 2 FQFQFKADCYFSNGTERVRLVARYIYNREQYAHFDSDLGHFVADTPLGKPDADY---FNSQPEVLERKRAAVDT 72
BLAST of HO054813 vs. TrEMBL
Match: Q8SND9|Q8SND9_9CHAR (MHC class II antigen B (Fragment) OS=Gallinago media PE=4 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 7.673e-9 Identity = 36/71 (50.70%), Postives = 42/71 (59.15%), Query Frame = -2 Query: 75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG--TRDRLPPAKLYPNFYSQPHIQERKRAGVDT 281 FQ QFK CYF+NGT+RVRLV I+NR+Q D++ G D F SQP I ERKRA VDT Sbjct: 2 FQFQFKGDCYFSNGTERVRLVARYIYNREQYAHFDSDLGHYVADTPLGKPTADYFNSQPEILERKRAAVDT 72
BLAST of HO054813 vs. TrEMBL
Match: Q671K1|Q671K1_9CHAR (MHC class II antigen B (Fragment) OS=Gallinago media PE=4 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 7.673e-9 Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = -2 Query: 75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG--TRDRLPPAKLYPNFY-SQPHIQERKRAGVDT 281 FQ QFK CYF+NGT+RVRLV LI+NR+Q D++ G D P K +++ SQP I ERKRA VDT Sbjct: 2 FQVQFKGDCYFSNGTERVRLVARLIYNREQYAHFDSDLGHFVAD-TPLGKPDADYWNSQPEILERKRAEVDT 72
BLAST of HO054813 vs. TrEMBL
Match: Q6IVI3|Q6IVI3_9CHAR (MHC class II antigen B (Fragment) OS=Gallinago media PE=4 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 1.002e-8 Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = -2 Query: 75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRGTR-DRLPPAKLYPNFY-SQPHIQERKRAGVDT 281 FQ QFKA CYF+NGT+RVRLV I+NR+Q D++ G P K +++ SQP + ERKRA VDT Sbjct: 2 FQFQFKADCYFSNGTERVRLVARYIYNREQYAHFDSDLGHYVADTPLGKPDADYWNSQPEVLERKRAAVDT 72
BLAST of HO054813 vs. TrEMBL
Match: Q671I6|Q671I6_9CHAR (MHC class II antigen B (Fragment) OS=Gallinago media PE=4 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 1.002e-8 Identity = 35/71 (49.30%), Postives = 42/71 (59.15%), Query Frame = -2 Query: 75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG--TRDRLPPAKLYPNFYSQPHIQERKRAGVDT 281 FQ QFK CYF+NGT+RVRLV I+NR+Q D++ G D F SQP + ERKRA VDT Sbjct: 2 FQFQFKGDCYFSNGTERVRLVARYIYNREQYAHFDSDLGYFVADTPLGKPTADYFNSQPEVLERKRAAVDT 72 The following BLAST results are available for this feature:
BLAST of HO054813 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot) Total hits: 3
BLAST of HO054813 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL) Total hits: 10
InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >HO054813 ID=HO054813; Name=HO054813; organism=Vaccinium corymbosum; type=EST; length=390bpback to top Annotated Terms
The
following terms have been associated with
this EST:
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