HO054813

EST Overview
NameHO054813
Unique NameHO054813
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length390
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Swissprot2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL2011-01-18
InterProScan analysis for Vaccinium corymbosum unigene v12011-01-18
Homology
BLAST of HO054813 vs. DB:swissprot:display
Match: HB2D_MOUSE (H-2 class II histocompatibility antigen, A-D beta chain OS=Mus musculus GN=H2-Ab1 PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 4.600e-8
Identity = 33/76 (43.42%), Postives = 45/76 (59.21%), Query Frame = -2
Query:   72 NFQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG-----TRDRLPPAKLYPNFYSQPHIQERKRAGVDTS 284
            +F  QFK  CY+TNGT R+RLV   I+NR++   +D++ G     T    P A+ +    SQP I ER RA VDT+
Sbjct:   33 HFVVQFKGECYYTNGTQRIRLVTRYIYNREEYVRYDSDVGEYRAVTELGRPDAEYW---NSQPEILERTRAEVDTA 105          
BLAST of HO054813 vs. DB:swissprot:display
Match: DQB1_HUMAN (HLA class II histocompatibility antigen, DQ beta 1 chain OS=Homo sapiens GN=HLA-DQB1 PE=1 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 1.338e-7
Identity = 33/74 (44.59%), Postives = 42/74 (56.76%), Query Frame = -2
Query:   75 NFQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNN----RGTRDRLPPAKLYPNFYSQPHIQERKRAGVDT 284
            +F  QFKA CYFTNGT+RVR V   I+NR++    D++    R      PP   Y N  SQ  + ER RA +DT
Sbjct:   38 DFVYQFKAMCYFTNGTERVRYVTRYIYNREEYARFDSDVEVYRAVTPLGPPDAEYWN--SQKEVLERTRAELDT 109          
BLAST of HO054813 vs. DB:swissprot:display
Match: HB2A_MOUSE (H-2 class II histocompatibility antigen, A beta chain OS=Mus musculus GN=H2-Ab1 PE=1 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 8.675e-7
Identity = 31/74 (41.89%), Postives = 41/74 (55.41%), Query Frame = -2
Query:   75 NFQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRGTRDRLP----PAKLYPNFYSQPHIQERKRAGVDT 284
            +F  QF   CYFTNGT R+R V   I+NR++   +D++ G    +     P   Y N  SQP I ER RA +DT
Sbjct:   33 HFVYQFMGECYFTNGTQRIRYVTRYIYNREEYVRYDSDVGEHRAVTELGRPDAEYWN--SQPEILERTRAELDT 104          
BLAST of HO054813 vs. TrEMBL
Match: Q671K8|Q671K8_9CHAR (MHC class II antigen B (Fragment) OS=Gallinago media PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.637e-9
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = -2
Query:   75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG--TRDRLPPAKLYPNFYSQPHIQERKRAGVDT 281
            FQ QFK  CYF+NGT+RVRLV  LI+NR+Q    D++ G    D          F SQP + ERKRA VDT
Sbjct:    2 FQFQFKGDCYFSNGTERVRLVARLIYNREQYAHFDSDLGYFVADTPLGKPTADYFNSQPEVLERKRAAVDT 72          
BLAST of HO054813 vs. TrEMBL
Match: Q671K6|Q671K6_9CHAR (MHC class II antigen B (Fragment) OS=Gallinago media PE=4 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 2.637e-9
Identity = 37/71 (52.11%), Postives = 43/71 (60.56%), Query Frame = -2
Query:   75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG--TRDRLPPAKLYPNFYSQPHIQERKRAGVDT 281
            FQ QFKA CYF+NGT+RVRLV   I+NR+Q    D++ G    D          F SQP I ERKRA VDT
Sbjct:    2 FQFQFKADCYFSNGTERVRLVARYIYNREQYAHFDSDLGHYVADTPLGKPTADYFNSQPEILERKRAAVDT 72          
BLAST of HO054813 vs. TrEMBL
Match: Q6IVH5|Q6IVH5_9CHAR (MHC class II antigen B (Fragment) OS=Gallinago media PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.444e-9
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = -2
Query:   75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG--TRDRLPPAKLYPNFYSQPHIQERKRAGVDT 281
            FQ QFKA CYF+NGT+RVRLV   I+NR+Q    D++ G    D          F SQP + ERKRA VDT
Sbjct:    2 FQFQFKADCYFSNGTERVRLVARYIYNREQYAHFDSDLGHYVADTPLGKPTADYFNSQPEVLERKRAAVDT 72          
BLAST of HO054813 vs. TrEMBL
Match: C1JEL7|C1JEL7_9AVES (MHC class II antigen (Fragment) OS=Pachyptila belcheri GN=Pabe-DAB1 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.444e-9
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = -2
Query:   75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG--TRDRLPPAKLYPNFYSQPHIQERKRAGVDT 281
            FQ+ FK  CYFTNGT+RVRLVV  I+NRQQ    D++ G    D      +  ++ SQ  I ERKRA VDT
Sbjct:    2 FQDMFKGDCYFTNGTERVRLVVRYIYNRQQYAHFDSDVGHFVADTPLGESIAKSWNSQTDIVERKRAAVDT 72          
BLAST of HO054813 vs. TrEMBL
Match: C1JEJ5|C1JEJ5_9AVES (MHC class II antigen (Fragment) OS=Pachyptila belcheri GN=Pabe-DAB1 PE=4 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.499e-9
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = -2
Query:   75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG--TRDRLPPAKLYPNFYSQPHIQERKRAGVDT 281
            FQ+ FK  CYFTNGT+RVRLVV  I+NRQQ    D++ G    D      +  ++ SQ  I ERKRA VDT
Sbjct:    2 FQDMFKGDCYFTNGTERVRLVVRYIYNRQQYVHFDSDVGHFVADTPLGESIAKSWNSQTDIVERKRAAVDT 72          
BLAST of HO054813 vs. TrEMBL
Match: Q6IVH7|Q6IVH7_9CHAR (MHC class II antigen B (Fragment) OS=Gallinago media PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.875e-9
Identity = 38/74 (51.35%), Postives = 45/74 (60.81%), Query Frame = -2
Query:   75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG-----TRDRLPPAKLYPNFYSQPHIQERKRAGVDT 281
            FQ QFKA CYF+NGT+RVRLV   I+NR+Q    D++ G     T    P A     F SQP + ERKRA VDT
Sbjct:    2 FQFQFKADCYFSNGTERVRLVARYIYNREQYAHFDSDLGHFVADTPLGKPDADY---FNSQPEVLERKRAAVDT 72          
BLAST of HO054813 vs. TrEMBL
Match: Q8SND9|Q8SND9_9CHAR (MHC class II antigen B (Fragment) OS=Gallinago media PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.673e-9
Identity = 36/71 (50.70%), Postives = 42/71 (59.15%), Query Frame = -2
Query:   75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG--TRDRLPPAKLYPNFYSQPHIQERKRAGVDT 281
            FQ QFK  CYF+NGT+RVRLV   I+NR+Q    D++ G    D          F SQP I ERKRA VDT
Sbjct:    2 FQFQFKGDCYFSNGTERVRLVARYIYNREQYAHFDSDLGHYVADTPLGKPTADYFNSQPEILERKRAAVDT 72          
BLAST of HO054813 vs. TrEMBL
Match: Q671K1|Q671K1_9CHAR (MHC class II antigen B (Fragment) OS=Gallinago media PE=4 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.673e-9
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = -2
Query:   75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG--TRDRLPPAKLYPNFY-SQPHIQERKRAGVDT 281
            FQ QFK  CYF+NGT+RVRLV  LI+NR+Q    D++ G    D  P  K   +++ SQP I ERKRA VDT
Sbjct:    2 FQVQFKGDCYFSNGTERVRLVARLIYNREQYAHFDSDLGHFVAD-TPLGKPDADYWNSQPEILERKRAEVDT 72          
BLAST of HO054813 vs. TrEMBL
Match: Q6IVI3|Q6IVI3_9CHAR (MHC class II antigen B (Fragment) OS=Gallinago media PE=4 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.002e-8
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = -2
Query:   75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRGTR-DRLPPAKLYPNFY-SQPHIQERKRAGVDT 281
            FQ QFKA CYF+NGT+RVRLV   I+NR+Q    D++ G      P  K   +++ SQP + ERKRA VDT
Sbjct:    2 FQFQFKADCYFSNGTERVRLVARYIYNREQYAHFDSDLGHYVADTPLGKPDADYWNSQPEVLERKRAAVDT 72          
BLAST of HO054813 vs. TrEMBL
Match: Q671I6|Q671I6_9CHAR (MHC class II antigen B (Fragment) OS=Gallinago media PE=4 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.002e-8
Identity = 35/71 (49.30%), Postives = 42/71 (59.15%), Query Frame = -2
Query:   75 FQEQFKATCYFTNGTDRVRLVVMLIFNRQQLPPHDNNRG--TRDRLPPAKLYPNFYSQPHIQERKRAGVDT 281
            FQ QFK  CYF+NGT+RVRLV   I+NR+Q    D++ G    D          F SQP + ERKRA VDT
Sbjct:    2 FQFQFKGDCYFSNGTERVRLVARYIYNREQYAHFDSDLGYFVADTPLGKPTADYFNSQPEVLERKRAAVDT 72          
The following BLAST results are available for this feature:
BLAST of HO054813 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 3
Match NameE-valueIdentityDescription
HB2D_MOUSE4.600e-843.42H-2 class II histocompatibility antigen, A-D beta ... [more]
DQB1_HUMAN1.338e-744.59HLA class II histocompatibility antigen, DQ beta 1... [more]
HB2A_MOUSE8.675e-741.89H-2 class II histocompatibility antigen, A beta ch... [more]
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BLAST of HO054813 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
Q671K8|Q671K8_9CHAR2.637e-950.70MHC class II antigen B (Fragment) OS=Gallinago med... [more]
Q671K6|Q671K6_9CHAR2.637e-952.11MHC class II antigen B (Fragment) OS=Gallinago med... [more]
Q6IVH5|Q6IVH5_9CHAR3.444e-950.70MHC class II antigen B (Fragment) OS=Gallinago med... [more]
C1JEL7|C1JEL7_9AVES3.444e-950.70MHC class II antigen (Fragment) OS=Pachyptila belc... [more]
C1JEJ5|C1JEJ5_9AVES4.499e-950.70MHC class II antigen (Fragment) OS=Pachyptila belc... [more]
Q6IVH7|Q6IVH7_9CHAR5.875e-951.35MHC class II antigen B (Fragment) OS=Gallinago med... [more]
Q8SND9|Q8SND9_9CHAR7.673e-950.70MHC class II antigen B (Fragment) OS=Gallinago med... [more]
Q671K1|Q671K1_9CHAR7.673e-952.78MHC class II antigen B (Fragment) OS=Gallinago med... [more]
Q6IVI3|Q6IVI3_9CHAR1.002e-850.70MHC class II antigen B (Fragment) OS=Gallinago med... [more]
Q671I6|Q671I6_9CHAR1.002e-849.30MHC class II antigen B (Fragment) OS=Gallinago med... [more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 99..111
score
NoneNo IPR availableSEGsegsegcoord: 54..66
score
NoneNo IPR availableSEGsegsegcoord: 1..13
score
NoneNo IPR availablePANTHERPTHR19944MHC CLASS II-RELATEDcoord: 8..77
score: 9
IPR000353MHC class II, beta chain, N-terminalPFAMPF00969MHC_II_betacoord: 16..77
score: 1.6
IPR011162MHC classes I/II-like antigen recognition proteinSUPERFAMILY54452MHC antigen-recognition domaincoord: 5..48
score: 1.6
IPR014745MHC class II, alpha/beta chain, N-terminalGENE3D3.10.320.10no descriptioncoord: 8..77
score: 1.3

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>HO054813 ID=HO054813; Name=HO054813; organism=Vaccinium corymbosum; type=EST; length=390bp
GAGNAGAGNNCAGGCAAGGGTATCGATTCCCGCGTCAGGAGGAAGTTTAC
TCAGGACTCATCACGCAGAGGAGACGTGTCCACCCCAGCCCGTTTCCTCT
CCTGTATGTGCGGCTGGCTGTAGAAGTTTGGGTAGAGCTTGGCCGGGGGC
AGTCGGTCACGAGTGCCCCTGTTGTTGTCGTGCGGGGGGAGCTGCTGGCG
GTTGAAGATCAACATCACCACCAGCCTCACCCGGTCGGTGCCGTTGGTGA
AGTAACAGGTGGCCTTAAACTGTTCCTGGAAATTGCTGGTCGTGCGGGAT
CTCCATCATTCCCCTTTTTTATATCGCGATTTTTTCCCTGATTTTGTTGT
CTTGGTTACCCCCTTTTTACCCCAAACAATCGGGCATACC
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Biological Process
TermDefinition
GO:0006955immune response
GO:0019882antigen processing and presentation
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0042613MHC class II protein complex
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated
IPR000353MHC class II, beta chain, N-terminal
IPR011162MHC_I/II-like_Ag-recog
IPR014745MHC class II, alpha/beta chain, N-terminal