CV090360

EST Overview
NameCV090360
Unique NameCV090360
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length523
Libraries
Library NameType
LIBEST_014530 cDNA cold acclimated Bluecrop librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide2011-01-18
InterProScan analysis for Vaccinium corymbosum unigene v12011-01-18
Homology
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BLAST of CV090360 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0009s14920.2 ()

HSP 1 Score: 42.3578 bits (98), Expect = 1.102e-8
Identity = 19/44 (43.18%), Postives = 23/44 (52.27%), Query Frame = 3 
Query:   30 PXDXXDFDLXLXMXXQXLEDXLGXLERWXFXENXPAXAHNKVRV 161
            P D  DFD+ L M  Q  ED +    RW F E  P  AH KV++
Sbjct:  164 PSDFRDFDIILAMDKQNREDIMEAFNRWKFRETLPDDAHKKVKL 207

HSP 2 Score: 33.8834 bits (76), Expect = 1.102e-8
Identity = 13/21 (61.90%), Postives = 15/21 (71.43%), Query Frame = 1 
Query:  163 LCSXXXKXDEREVPDPXYGGP 225
            +CS   K +E EVPDP YGGP
Sbjct:  208 MCSFCKKHEETEVPDPYYGGP 228
The following BLAST results are available for this feature:
BLAST of CV090360 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
POPTR_0009s14920.21.102e-843.18[more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 1..19
score
NoneNo IPR availableSEGsegsegcoord: 10..32
score: NAcoord: 51..58
score
NoneNo IPR availableSEGsegsegcoord: 15..27
score
NoneNo IPR availableSEGsegsegcoord: 10..16
score
NoneNo IPR availableSEGsegsegcoord: 15..27
score: NAcoord: 50..57
score: NAcoord: 81..99
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CV090360 ID=CV090360; Name=CV090360; organism=Vaccinium corymbosum; type=EST; length=523bp
GNTNACNNCACTGTCAANANCAATTTCNGCCNNNNGATNTCNNGGATTTC
GATCTTANNCTTNNNATGCNNGANCAAANCTTAGAGGACATNCTTGGANC
TCTGGAGAGATGGNANTTTAANGAGAACTTNCCTGCTGANGCACATAACA
AGGTTCGGGTANCTGTGCTCGNACTGNAANAAGCNTGATGAAAGAGAAGT
TCCTGATCCTTANTATGGTGGACCACCCATGATTTGANCAAGGTTCTCGA
CTTACTTGAAGATGCTTGTNAANCANTANTGNACNNCCTTTTATGGNAAA
ACAAGCACANTTCCAGANTCATATCTCCTCANGGGATAATGNNTGATTGA
ATTCNATGGACCATGTTCATGGANTGATGTTCACTTTTGTGCTGNTGTAT
GGATTATATNATATGTCATCNTTNATAANAAATCTNACTAGAANTTGGCN
AANCCTGNTGCANCCATTCTGGTTGCAATTTATACTATTATNAATTGTTG
CCCATAAAGCCGAGAATANCATA
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated