CV090438

EST Overview
NameCV090438
Unique NameCV090438
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length798
Libraries
Library NameType
LIBEST_014530 cDNA cold acclimated Bluecrop librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Homology
BLAST of CV090438 vs. DB:swissprot:display
Match: M030_ARATH (Uncharacterized mitochondrial protein AtMg00030 OS=Arabidopsis thaliana GN=AtMg00030 PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.805e-18
Identity = 50/75 (66.67%), Postives = 52/75 (69.33%), Query Frame = 3
Query:   33 MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWTFRL*KRPSFSMPG-HPSNAFFSMKYSGTRNTNAISTK 254
            MFQFAKF KSKERRLATELGYGFPIGDPWITDGISPW F          PG HP ++F S    GT NT  IS K
Sbjct:    1 MFQFAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRSCT-QGTLNTTKISMK 74          
BLAST of CV090438 vs. TrEMBL
Match: Q5M9R1|Q5M9R1_TOBAC (Putative uncharacterized protein orf138b OS=Nicotiana tabacum GN=orf138c PE=4 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.697e-20
Identity = 52/70 (74.29%), Postives = 55/70 (78.57%), Query Frame = 3
Query:    3 RLISFPLATQMFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWTFRL*KRPSFSMPG-HPSNAFFS 209
            RLIS PLAT+MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPW F          PG HP ++F S
Sbjct:   37 RLISLPLATKMFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRS 106          
BLAST of CV090438 vs. TrEMBL
Match: B9RRJ3|B9RRJ3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1644140 PE=4 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.658e-11
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = -3
Query:   41 RRKVHGEIPSVIHGSPIGKPYPSSVASLRSLDFSNLAN 154
            + K HGEIPSVIHGSPIGKPYPSSVASLRSLDF NLAN
Sbjct:    4 KAKGHGEIPSVIHGSPIGKPYPSSVASLRSLDFENLAN 41          
BLAST of CV090438 vs. Vitis vinifera peptide
Match: GSVIVT01013601001 (assembled CDS)

HSP 1 Score: 84.7297 bits (208), Expect = 4.350e-17
Identity = 43/60 (71.67%), Postives = 45/60 (75.00%), Query Frame = 3
Query:   33 MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWTFRL*KRPSFSMPG-HPSNAFFS 209
            MFQFAKFEKSKERRLATELGYGF IGDPWITDGISPW F          PG HP ++F S
Sbjct:    1 MFQFAKFEKSKERRLATELGYGFLIGDPWITDGISPWPFASQSVLPSQCPGIHPMHSFRS 60          

HSP 2 Score: 50.8322 bits (120), Expect = 7.002e-7
Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 1
Query:  145 PFASESVLPSQCPGIHPMHSFR 210
            PFAS+SVLPSQCPGIHPMHSFR
Sbjct:   38 PFASQSVLPSQCPGIHPMHSFR 59          
BLAST of CV090438 vs. Vitis vinifera peptide
Match: GSVIVT01014508001 (assembled CDS)

HSP 1 Score: 65.4698 bits (158), Expect = 2.731e-11
Identity = 30/31 (96.77%), Postives = 30/31 (96.77%), Query Frame = 3
Query:   33 MFQFAKFEKSKERRLATELGYGFPIGDPWIT 125
            MFQFAKFEKSKERRLATELGYGF IGDPWIT
Sbjct:    1 MFQFAKFEKSKERRLATELGYGFLIGDPWIT 31          
BLAST of CV090438 vs. TAIR peptide
Match: ATMG00030.1 (| Symbols: ORF107A | hypothetical protein | chrM:11918-12241 FORWARD LENGTH=107)

HSP 1 Score: 93.2041 bits (230), Expect = 1.775e-19
Identity = 50/75 (66.67%), Postives = 52/75 (69.33%), Query Frame = 3
Query:   33 MFQFAKFEKSKERRLATELGYGFPIGDPWITDGISPWTFRL*KRPSFSMPG-HPSNAFFSMKYSGTRNTNAISTK 254
            MFQFAKF KSKERRLATELGYGFPIGDPWITDGISPW F          PG HP ++F S    GT NT  IS K
Sbjct:    1 MFQFAKFSKSKERRLATELGYGFPIGDPWITDGISPWPFASESVLPSQCPGIHPMHSFRSCT-QGTLNTTKISMK 74          
The following BLAST results are available for this feature:
BLAST of CV090438 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
M030_ARATH1.805e-1866.67Uncharacterized mitochondrial protein AtMg00030 OS... [more]
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BLAST of CV090438 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
Q5M9R1|Q5M9R1_TOBAC2.697e-2074.29Putative uncharacterized protein orf138b OS=Nicoti... [more]
B9RRJ3|B9RRJ3_RICCO6.658e-1189.47Putative uncharacterized protein OS=Ricinus commun... [more]
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BLAST of CV090438 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 2
Match NameE-valueIdentityDescription
GSVIVT010136010014.350e-1771.67assembled CDS[more]
GSVIVT010145080012.731e-1196.77assembled CDS[more]
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BLAST of CV090438 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
ATMG00030.11.775e-1966.67| Symbols: ORF107A | hypothetical protein | chrM:1... [more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 17..35
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CV090438 ID=CV090438; Name=CV090438; organism=Vaccinium corymbosum; type=EST; length=798bp
CTCGGTTGATTTCCTTTCCTTTAGCTACTCAGATGTTTCAGTTCGCTAAG
TTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTT
CCCGATCGGAGATCCATGGATCACAGACGGTATCTCCCCATGGACCTTTC
GCCTCTGAAAGCGTCCTTCCTTCTCAATGCCCGGGCATCCATCCAATGCA
TTCTTTTCGATGAAGTACTCAGGTACACGGAACACCAACGCAATCTCGAC
AAAGAAAGTACAAGCAACTACATCAACAACCTGACGTGAACGGCCTGGAA
CGAATGAATAGGCACTTGAAATTAATTAGACTTCTATAACTATATAAAGA
AATAGAACAAGACCCGCTGGACTTGCCCCTCTCTCTACCTGAAAAAATAA
GTCGAGGGACACAAGATCGCCGATCTCTTCATTATATACGACATTTCGAG
ATAGCAGAGAAGACTGTATTTCTGATACGGATTGGGGAACTTCTTTCTTT
AATAGCGGTCATTGCAGGCAGCAGCGGCGAGTGAAAGCATAGGGCTCGTT
AGGGCTTCCCTGGCTTAGCTTCCTTCACCCCTACGCCTAGGAAGTCTNGT
ATGTACGGGCTTTATTATGGCTAAAACGAGAGAGGTAGCGAGACTGACCG
CATTGGGAATAAGAAGACTTGCATGTGTTTAGCATATTAGCTTGCGTTCT
CGGCCTGGTATCCTGCACCTCGCGNTCATGATTCCTGTGTAGGGGTGAAA
TCCAGCATGTCCCAGAATTCCTGNTCGACCCCTCTTTCTATCTATGGG
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated