CV090489 | GDV

EST Overview


Name	CV090489
Unique Name	CV090489
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	850

Libraries


Library Name	Type
LIBEST_014530 cDNA cold acclimated Bluecrop library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Swissprot	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide	2011-02-10
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18
KEGG analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of CV090489 vs. DB:swissprot:display
Match: RPO1B_TOBAC (DNA-directed RNA polymerase 1B, mitochondrial OS=Nicotiana tabacum GN=RPOT1-TOM PE=2 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 2.743e-60
Identity = 109/122 (89.34%), Postives = 118/122 (96.72%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQ+LTLQRETDKVM KRQRTAFPPNFVHSLDGSHMMMTA+ACKE+GL+FAGVHDSYWTHACDVD+MN ILREKFVELY+APILE+LLESFQ+SFP L FPPLPERGDFDLREVL+SPYFFN
Sbjct:  881 SLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002

[Close]

BLAST of CV090489 vs. DB:swissprot:display
Match: RPOT2_NICSY (DNA-directed RNA polymerase 2, chloroplastic/mitochondrial OS=Nicotiana sylvestris GN=RPOT2 PE=2 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 3.033e-59
Identity = 107/122 (87.70%), Postives = 116/122 (95.08%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQ+LTLQRET+KVM KRQRTAFPPNF+HSLDGSHMMMTAVAC+ AGLNFAGVHDSYWTHACDVDK+N ILREKFVELYEAPILE LLESFQ S+PTL FPPLPERGDFD+R+VL+SPYFFN
Sbjct:  899 SLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGDFDMRDVLESPYFFN 1020

[Close]

BLAST of CV090489 vs. DB:swissprot:display
Match: RPO2A_TOBAC (DNA-directed RNA polymerase 2A (Fragment) OS=Nicotiana tabacum GN=RPOT2-SYL PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 3.033e-59
Identity = 107/122 (87.70%), Postives = 116/122 (95.08%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQ+LTLQRET+KVM KRQRTAFPPNF+HSLDGSHMMMTAVAC+ AGLNFAGVHDSYWTHACDVDK+N ILREKFVELYEAPILE LLESFQ S+PTL FPPLPERGDFD+R+VL+SPYFFN
Sbjct:  211 SLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGDFDMRDVLESPYFFN 332

[Close]

BLAST of CV090489 vs. DB:swissprot:display
Match: RPOT1_NICSY (DNA-directed RNA polymerase 1, mitochondrial OS=Nicotiana sylvestris GN=RPOT1 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.961e-59
Identity = 108/122 (88.52%), Postives = 117/122 (95.90%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQ+LTLQRETDKVM KRQRTAFPPNFVHSLDGSHMMMTA+ACKE+GL+FAGVHDSYWTHA DVD+MN ILREKFVELY+APILE+LLESFQ+SFP L FPPLPERGDFDLREVL+SPYFFN
Sbjct:  881 SLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002

[Close]

BLAST of CV090489 vs. DB:swissprot:display
Match: RPO1A_TOBAC (DNA-directed RNA polymerase 1A (Fragment) OS=Nicotiana tabacum GN=RPOT1-SYL PE=3 SV=2)

HSP 1 Score: 228.409 bits (581), Expect = 3.961e-59
Identity = 108/122 (88.52%), Postives = 117/122 (95.90%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQ+LTLQRETDKVM KRQRTAFPPNFVHSLDGSHMMMTA+ACKE+GL+FAGVHDSYWTHA DVD+MN ILREKFVELY+APILE+LLESFQ+SFP L FPPLPERGDFDLREVL+SPYFFN
Sbjct:   34 SLQILTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 155

[Close]

BLAST of CV090489 vs. DB:swissprot:display
Match: RPO2B_TOBAC (DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial OS=Nicotiana tabacum GN=RPOT2-TOM PE=2 SV=2)

HSP 1 Score: 226.483 bits (576), Expect = 1.505e-58
Identity = 106/122 (86.89%), Postives = 115/122 (94.26%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQ+LTLQ+ET+KVM KRQRTAFPPNF+HSLDGSHMMMTAVAC+ AGLNFAGVHDSYWTHACDVDK+N ILREKFVELYE PILE LLESFQ S+PTL FPPLPERGDFDLR+VL+SPYFFN
Sbjct:  900 SLQILTLQQETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACDVDKLNRILREKFVELYETPILEKLLESFQTSYPTLLFPPLPERGDFDLRDVLESPYFFN 1021

[Close]

BLAST of CV090489 vs. DB:swissprot:display
Match: RPOT1_ARATH (DNA-directed RNA polymerase 1, mitochondrial OS=Arabidopsis thaliana GN=RPOT1 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.193e-55
Identity = 102/122 (83.61%), Postives = 112/122 (91.80%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            +LQVLTL RETDKVM +RQ TAF PNF+HSLDGSHMMMTAVAC  AGL+FAGVHDS+WTHACDVD MNTILREKFVELYE PILE+LLESFQKSFP ++FPPLPERGDFDLR+VL+S YFFN
Sbjct:  855 TLQVLTLSRETDKVMARRQMTAFAPNFIHSLDGSHMMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTILREKFVELYEKPILENLLESFQKSFPDISFPPLPERGDFDLRKVLESTYFFN 976

[Close]

BLAST of CV090489 vs. DB:swissprot:display
Match: RPO3B_TOBAC (DNA-directed RNA polymerase 3B, chloroplastic OS=Nicotiana tabacum GN=RPOT3-TOM PE=2 SV=2)

HSP 1 Score: 213.001 bits (541), Expect = 1.722e-54
Identity = 99/122 (81.15%), Postives = 111/122 (90.98%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQ+L LQRE D V  ++QRTAFPPNFVHSLDGSHMMMTAVAC++AGL FAGVHDS+WTHACDVD+MN ILREKFVELY  PILEDLLE+FQKS+P L FPPLP+RGDF+LREVL+SPYFFN
Sbjct:  856 SLQILALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSLPILEDLLENFQKSYPALTFPPLPKRGDFNLREVLESPYFFN 977

[Close]

BLAST of CV090489 vs. DB:swissprot:display
Match: RPOT3_NICSY (DNA-directed RNA polymerase 3, chloroplastic OS=Nicotiana sylvestris GN=RPOT3 PE=2 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 5.011e-54
Identity = 100/122 (81.97%), Postives = 109/122 (89.34%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVL LQRE D V  ++QRTAFPPNFVHSLDGSHMMMTAVAC++AGL FAGVHDS+WTHACDVD+MN ILREKFVELY  PILEDLLESFQ S+P L FPPLP+RGDFDL EVL+SPYFFN
Sbjct:  856 SLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVLESPYFFN 977

[Close]

BLAST of CV090489 vs. DB:swissprot:display
Match: RPO3A_TOBAC (DNA-directed RNA polymerase 3A, chloroplastic OS=Nicotiana tabacum GN=RPOT3-SYL PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 5.011e-54
Identity = 100/122 (81.97%), Postives = 109/122 (89.34%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVL LQRE D V  ++QRTAFPPNFVHSLDGSHMMMTAVAC++AGL FAGVHDS+WTHACDVD+MN ILREKFVELY  PILEDLLESFQ S+P L FPPLP+RGDFDL EVL+SPYFFN
Sbjct:  856 SLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVLESPYFFN 977

[Close]

BLAST of CV090489 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0010s14650.1 ()

HSP 1 Score: 231.491 bits (589), Expect = 5.239e-61
Identity = 111/122 (90.98%), Postives = 115/122 (94.26%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVLTLQRETDKVM KRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVD+MN ILREKFVELYE PILE+LLESFQ SFP L FPPLPERGDFDLR+VL+S YFFN
Sbjct:  741 SLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLESFQSSFPNLKFPPLPERGDFDLRDVLQSTYFFN 862

[Close]

BLAST of CV090489 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0008s11200.1 ()

HSP 1 Score: 227.254 bits (578), Expect = 9.880e-60
Identity = 109/122 (89.34%), Postives = 115/122 (94.26%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVLTL+RETDKVM KRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVD+MN ILREKFVELYEAPILE+LLESFQ SFP L FPPLPERG FDL++VL+S YFFN
Sbjct:  867 SLQVLTLKRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEAPILENLLESFQSSFPNLKFPPLPERGVFDLKDVLRSTYFFN 988

[Close]

BLAST of CV090489 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0017s14590.1 ()

HSP 1 Score: 226.098 bits (575), Expect = 2.201e-59
Identity = 107/122 (87.70%), Postives = 116/122 (95.08%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVL LQ+ETDKVM +RQRTAFPPNFVHSLD SHMMMTAVACK AGLNFAGVHDSYWTHACDVD+MN ILREKFVELYE PILE+LLESF+KSFPTL+FPPLP+RGDF+LREVL+SPYFFN
Sbjct:  866 SLQVLILQKETDKVMVQRQRTAFPPNFVHSLDSSHMMMTAVACKGAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLESFEKSFPTLSFPPLPDRGDFELREVLESPYFFN 987

[Close]

BLAST of CV090489 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0004s11050.1 ()

HSP 1 Score: 225.328 bits (573), Expect = 3.754e-59
Identity = 107/122 (87.70%), Postives = 115/122 (94.26%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQ LTLQ+ETDKVM KRQRTAFPPNFVHSLDGSHMMMTAVACK AGL FAGVHDSYWTHACDVD+MN ILREKFVELYE PIL++LLESFQKSFPTL+FPPLPE GDF+LR+VL+SPYFFN
Sbjct:  425 SLQFLTLQKETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRAGLKFAGVHDSYWTHACDVDEMNRILREKFVELYETPILKNLLESFQKSFPTLSFPPLPEWGDFELRQVLESPYFFN 546

[Close]

BLAST of CV090489 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0018s11230.1 ()

HSP 1 Score: 201.83 bits (512), Expect = 4.445e-52
Identity = 95/122 (77.87%), Postives = 107/122 (87.70%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQ+L LQRE   V  ++QRTAFPPNFVHSLDGSHMMMTAVAC++AGL FAGVHDS+WTHA DVD MN ILREKFVELY  PILE+LLE FQ S+PTL FPPLPERG+FDL++VL+SPYFFN
Sbjct:  761 SLQILALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHATDVDLMNRILREKFVELYNMPILENLLEDFQTSYPTLQFPPLPERGNFDLQKVLRSPYFFN 882

[Close]

BLAST of CV090489 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s19490.1 ()

HSP 1 Score: 196.823 bits (499), Expect = 1.430e-50
Identity = 94/122 (77.05%), Postives = 104/122 (85.25%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVL LQRE   V  ++QRTAFPPNFVHSLDGSHMMMTAVAC++A L FAGVHDS+WTHA D D MN ILREKFVELY  PILE+LLE FQ S+PTL FP LPERG+FDL+EVL+SPYFFN
Sbjct:  861 SLQVLALQREGSSVQVRKQRTAFPPNFVHSLDGSHMMMTAVACRDADLRFAGVHDSFWTHARDADLMNRILREKFVELYNMPILENLLEDFQTSYPTLKFPSLPERGNFDLQEVLRSPYFFN 982

[Close]

BLAST of CV090489 vs. P. persica 1.0 peptide
Match: ppa000780m ()

HSP 1 Score: 233.802 bits (595), Expect = 7.427e-62
Identity = 110/122 (90.16%), Postives = 118/122 (96.72%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVLTLQRETDKVM KRQRTAFPPNFVHSLDGSHMMMTAVACK+AGLNFAGVHDSYWTHACD+D+MN ILREKFVELYEAPILE+LLE FQ+SFPTL FPPLP+RGDFDLR+VL+SPYFFN
Sbjct:  885 SLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACDIDEMNRILREKFVELYEAPILENLLEGFQQSFPTLTFPPLPDRGDFDLRDVLESPYFFN 1006

[Close]

BLAST of CV090489 vs. P. persica 1.0 peptide
Match: ppa000719m ()

HSP 1 Score: 226.098 bits (575), Expect = 1.549e-59
Identity = 106/122 (86.89%), Postives = 116/122 (95.08%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVLTLQRET+KVM KRQRTAFPPNFVHSLD SHMMMTA+ACK+AGL+FAGVHDSYWTHACDVD+MN ILREKFV+LYE PILE+LLESFQ+SFP L FPPLPERGDFDLR+VL+SPYFFN
Sbjct:  903 SLQVLTLQRETEKVMVKRQRTAFPPNFVHSLDSSHMMMTAIACKKAGLSFAGVHDSYWTHACDVDEMNKILREKFVQLYETPILENLLESFQQSFPALTFPPLPERGDFDLRDVLESPYFFN 1024

[Close]

BLAST of CV090489 vs. P. persica 1.0 peptide
Match: ppa000868m ()

HSP 1 Score: 205.297 bits (521), Expect = 2.829e-53
Identity = 96/122 (78.69%), Postives = 108/122 (88.52%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVL LQRE++ V  ++QRTAFPPNFVHSLDGSHMMMTA+AC++AGL FAGVHDS+WTH CDVD+MN ILREKFVELY  PILE LLESFQ S+P L FPPLPERGDFDL +VL+SPYFFN
Sbjct:  855 SLQVLALQRESNSVDIRKQRTAFPPNFVHSLDGSHMMMTALACRDAGLRFAGVHDSFWTHPCDVDQMNEILREKFVELYSMPILESLLESFQASYPALTFPPLPERGDFDLLQVLESPYFFN 976

[Close]

BLAST of CV090489 vs. TrEMBL
Match: D7TA90|D7TA90_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_10.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00010122001 PE=4 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 3.290e-59
Identity = 111/122 (90.98%), Postives = 117/122 (95.90%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVL+LQRETDKVM KRQRTAFPPNFVHSLDGSHMMMTAVAC++AGLNFAGVHDSYWTHACDVD+MN ILREKFVELY  PILE+LLE FQKSFPTLNFPPLPERGDFDLREVL+SPYFFN
Sbjct:  689 SLQVLSLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEGFQKSFPTLNFPPLPERGDFDLREVLESPYFFN 810

[Close]

BLAST of CV090489 vs. TrEMBL
Match: P93661|P93661_CHEAL (DNA-directed RNA polymerase OS=Chenopodium album PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 5.612e-59
Identity = 109/122 (89.34%), Postives = 117/122 (95.90%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVLTL+ +TDKVM KRQRTAFPPNFVHSLDGSHMMMTA+ACK+AG+NFAGVHDSYWTHACDVDKMN ILREKFVELYE PILE+LLESFQ+SFPTL FPPLPERGDFDLREVL+SPYFFN
Sbjct:  867 SLQVLTLRCDTDKVMAKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGMNFAGVHDSYWTHACDVDKMNQILREKFVELYEQPILENLLESFQESFPTLQFPPLPERGDFDLREVLESPYFFN 988

[Close]

BLAST of CV090489 vs. TrEMBL
Match: B9T5S6|B9T5S6_RICCO (DNA-directed RNA polymerase OS=Ricinus communis GN=RCOM_0196710 PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 5.612e-59
Identity = 109/122 (89.34%), Postives = 117/122 (95.90%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVLTLQ+ET+KVM KRQRTAFPPNFVHSLDGSHMMMTAV CK AGLNFAGVHDSYWTHACDVDKMN ILREKFVELYE P+LE+LLESFQ+SFPTL+FPPLPERGDFDL++VLKSPYFFN
Sbjct:  468 SLQVLTLQQETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVTCKRAGLNFAGVHDSYWTHACDVDKMNRILREKFVELYETPVLENLLESFQQSFPTLSFPPLPERGDFDLQDVLKSPYFFN 589

[Close]

BLAST of CV090489 vs. TrEMBL
Match: B9HWT3|B9HWT3_POPTR (DNA-directed RNA polymerase OS=Populus trichocarpa GN=POPTRDRAFT_769753 PE=3 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 7.329e-59
Identity = 111/122 (90.98%), Postives = 115/122 (94.26%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVLTLQRETDKVM KRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVD+MN ILREKFVELYE PILE+LLESFQ SFP L FPPLPERGDFDLR+VL+S YFFN
Sbjct:  731 SLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLESFQSSFPNLKFPPLPERGDFDLRDVLQSTYFFN 852

[Close]

BLAST of CV090489 vs. TrEMBL
Match: C5X2G2|C5X2G2_SORBI (DNA-directed RNA polymerase OS=Sorghum bicolor GN=Sb02g039520 PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 6.204e-58
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVLTLQRETDKVM KRQRTAFPPNFVHSLDGSHMMMTAVACK  GLNFAGVHDSYWTHACDVD MN ILREKFVELY+ PILE+LLESF+KSFP L FPPLPERGDFD++EVL+SPYFFN
Sbjct:  855 SLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELYDTPILENLLESFEKSFPKLKFPPLPERGDFDMKEVLESPYFFN 976

[Close]

BLAST of CV090489 vs. TrEMBL
Match: D7SML3|D7SML3_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_83.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00036518001 PE=4 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 8.103e-58
Identity = 106/122 (86.89%), Postives = 116/122 (95.08%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVLTLQRET+ +M KRQRTAFPPNFVHSLDGSHMMMTA+ACK+AGLNFAGVHDSYWTHACDVD+MN +LREKFV+LYE PILE+LLESFQ+SFP L FPPLPERGDFDLREVL+SPYFFN
Sbjct:  914 SLQVLTLQRETETIMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDEMNRLLREKFVQLYETPILENLLESFQQSFPALEFPPLPERGDFDLREVLESPYFFN 1035

[Close]

BLAST of CV090489 vs. TrEMBL
Match: B9HIV5|B9HIV5_POPTR (DNA-directed RNA polymerase OS=Populus trichocarpa GN=POPTRDRAFT_765989 PE=3 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 1.382e-57
Identity = 109/122 (89.34%), Postives = 115/122 (94.26%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVLTL+RETDKVM KRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVD+MN ILREKFVELYEAPILE+LLESFQ SFP L FPPLPERG FDL++VL+S YFFN
Sbjct:  756 SLQVLTLKRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEAPILENLLESFQSSFPNLKFPPLPERGVFDLKDVLRSTYFFN 877

[Close]

BLAST of CV090489 vs. TrEMBL
Match: B9RLF2|B9RLF2_RICCO (DNA-directed RNA polymerase OS=Ricinus communis GN=RCOM_1466350 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 2.358e-57
Identity = 106/122 (86.89%), Postives = 114/122 (93.44%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQ+L LQ+ETDK+M KRQRTAFPPNFVHSLDGSHMMMTAVACK AGLNFAGVHDSYWTHACDVD+MN ILRE FVELYEAPILE+LLE FQKSFP L FPPLP+RGDFDLR+VL+SPYFFN
Sbjct:  876 SLQMLALQKETDKIMVKRQRTAFPPNFVHSLDGSHMMMTAVACKHAGLNFAGVHDSYWTHACDVDEMNRILRENFVELYEAPILENLLEGFQKSFPKLKFPPLPDRGDFDLRDVLESPYFFN 997

[Close]

BLAST of CV090489 vs. TrEMBL
Match: B9N1V3|B9N1V3_POPTR (DNA-directed RNA polymerase OS=Populus trichocarpa GN=POPTRDRAFT_580715 PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 3.079e-57
Identity = 107/122 (87.70%), Postives = 116/122 (95.08%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVL LQ+ETDKVM +RQRTAFPPNFVHSLD SHMMMTAVACK AGLNFAGVHDSYWTHACDVD+MN ILREKFVELYE PILE+LLESF+KSFPTL+FPPLP+RGDF+LREVL+SPYFFN
Sbjct:  422 SLQVLILQKETDKVMVQRQRTAFPPNFVHSLDSSHMMMTAVACKGAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYETPILENLLESFEKSFPTLSFPPLPDRGDFELREVLESPYFFN 543

[Close]

BLAST of CV090489 vs. TrEMBL
Match: Q84LK6|Q84LK6_ORYSJ (DNA-directed RNA polymerase OS=Oryza sativa subsp. japonica GN=rpoT1 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 4.022e-57
Identity = 108/122 (88.52%), Postives = 112/122 (91.80%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVLTLQRETDKVM KRQRTAFPPNFVHSLDGSHMMMTAVACK  GLNFAGVHDSYWTHACDVD MN ILREKFVELY+ PILE+LLESF+KSFP L FPPLPERGDFDL +VL SPYFFN
Sbjct:  896 SLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELYDTPILENLLESFEKSFPELKFPPLPERGDFDLTDVLGSPYFFN 1017

[Close]

BLAST of CV090489 vs. Vitis vinifera peptide
Match: GSVIVT01010122001 (assembled CDS)

HSP 1 Score: 232.646 bits (592), Expect = 1.422e-61
Identity = 111/122 (90.98%), Postives = 117/122 (95.90%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVL+LQRETDKVM KRQRTAFPPNFVHSLDGSHMMMTAVAC++AGLNFAGVHDSYWTHACDVD+MN ILREKFVELY  PILE+LLE FQKSFPTLNFPPLPERGDFDLREVL+SPYFFN
Sbjct:  689 SLQVLSLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEGFQKSFPTLNFPPLPERGDFDLREVLESPYFFN 810

[Close]

BLAST of CV090489 vs. Vitis vinifera peptide
Match: GSVIVT01036518001 (assembled CDS)

HSP 1 Score: 228.024 bits (580), Expect = 3.501e-60
Identity = 106/122 (86.89%), Postives = 116/122 (95.08%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVLTLQRET+ +M KRQRTAFPPNFVHSLDGSHMMMTA+ACK+AGLNFAGVHDSYWTHACDVD+MN +LREKFV+LYE PILE+LLESFQ+SFP L FPPLPERGDFDLREVL+SPYFFN
Sbjct:  914 SLQVLTLQRETETIMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDEMNRLLREKFVQLYETPILENLLESFQQSFPALEFPPLPERGDFDLREVLESPYFFN 1035

[Close]

BLAST of CV090489 vs. Vitis vinifera peptide
Match: GSVIVT01023660001 (assembled CDS)

HSP 1 Score: 209.534 bits (532), Expect = 1.289e-54
Identity = 100/122 (81.97%), Postives = 110/122 (90.16%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVL LQRE   V+ ++QRTAFPPNFVHSLDGSHMMMTAVAC++AGL FAGVHDS+WTHACDVDKMN ILREKFVELY  PILE+LLESFQ S PTL FPPLP+RG+FDLREVL+SPYFFN
Sbjct:  687 SLQVLALQREGSVVVIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTSHPTLTFPPLPDRGNFDLREVLESPYFFN 808

[Close]

BLAST of CV090489 vs. TAIR peptide
Match: AT1G68990.2 (| Symbols: MGP3 | male gametophyte defective 3 | chr1:25935499-25940755 REVERSE LENGTH=983)

HSP 1 Score: 216.853 bits (551), Expect = 1.173e-56
Identity = 102/122 (83.61%), Postives = 112/122 (91.80%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            +LQVLTL RETDKVM +RQ TAF PNF+HSLDGSHMMMTAVAC  AGL+FAGVHDS+WTHACDVD MNTILREKFVELYE PILE+LLESFQKSFP ++FPPLPERGDFDLR+VL+S YFFN
Sbjct:  862 TLQVLTLSRETDKVMARRQMTAFAPNFIHSLDGSHMMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTILREKFVELYEKPILENLLESFQKSFPDISFPPLPERGDFDLRKVLESTYFFN 983

[Close]

BLAST of CV090489 vs. TAIR peptide
Match: AT1G68990.1 (| Symbols: MGP3 | male gametophyte defective 3 | chr1:25935499-25940755 REVERSE LENGTH=976)

HSP 1 Score: 216.853 bits (551), Expect = 1.173e-56
Identity = 102/122 (83.61%), Postives = 112/122 (91.80%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            +LQVLTL RETDKVM +RQ TAF PNF+HSLDGSHMMMTAVAC  AGL+FAGVHDS+WTHACDVD MNTILREKFVELYE PILE+LLESFQKSFP ++FPPLPERGDFDLR+VL+S YFFN
Sbjct:  855 TLQVLTLSRETDKVMARRQMTAFAPNFIHSLDGSHMMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTILREKFVELYEKPILENLLESFQKSFPDISFPPLPERGDFDLRKVLESTYFFN 976

[Close]

BLAST of CV090489 vs. TAIR peptide
Match: AT2G24120.1 (| Symbols: PDE319, SCA3 | DNA/RNA polymerases superfamily protein | chr2:10249358-10254530 REVERSE LENGTH=993)

HSP 1 Score: 209.92 bits (533), Expect = 1.434e-54
Identity = 99/122 (81.15%), Postives = 110/122 (90.16%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQVL LQRE + V  ++QRTAFPPNFVHSLDG+HMMMTAVAC+EAGLNFAGVHDSYWTHACDVD MN ILREKFVELY  PILEDLL+SFQ+S+P L FPP+P+RGDFDL+EVLKS YFFN
Sbjct:  872 SLQVLALQREGNTVDVRKQRTAFPPNFVHSLDGTHMMMTAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYPNLVFPPVPKRGDFDLKEVLKSQYFFN 993

[Close]

BLAST of CV090489 vs. TAIR peptide
Match: AT5G15700.1 (| Symbols: | DNA/RNA polymerases superfamily protein | chr5:5115793-5121609 REVERSE LENGTH=1011)

HSP 1 Score: 207.994 bits (528), Expect = 5.451e-54
Identity = 97/122 (79.51%), Postives = 110/122 (90.16%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLREVLKSPYFFN 368
            SLQ L+LQ ETD+V+ +RQRTAFPPNF+HSLDGSHMMMTAVACK AG+ FAGVHDS+WTHACDVDK+N ILREKFVELY  PILE+LLESF++SFP L+FPPLPERGD DL+ VL SPYFFN
Sbjct:  890 SLQTLSLQHETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVACKRAGVCFAGVHDSFWTHACDVDKLNIILREKFVELYSQPILENLLESFEQSFPHLDFPPLPERGDLDLKVVLDSPYFFN 1011

[Close]

BLAST of CV090489 vs. TAIR peptide
Match: AT5G15700.2 (| Symbols: | DNA/RNA polymerases superfamily protein | chr5:5115572-5121609 REVERSE LENGTH=1051)

HSP 1 Score: 192.2 bits (487), Expect = 3.095e-49
Identity = 89/112 (79.46%), Postives = 102/112 (91.07%), Query Frame = 3

Query:    3 SLQVLTLQRETDKVMGKRQRTAFPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDKMNTILREKFVELYEAPILEDLLESFQKSFPTLNFPPLPERGDFDLR 338
            SLQ L+LQ ETD+V+ +RQRTAFPPNF+HSLDGSHMMMTAVACK AG+ FAGVHDS+WTHACDVDK+N ILREKFVELY  PILE+LLESF++SFP L+FPPLPERGD DL+
Sbjct:  890 SLQTLSLQHETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVACKRAGVCFAGVHDSFWTHACDVDKLNIILREKFVELYSQPILENLLESFEQSFPHLDFPPLPERGDLDLK 1001

The following BLAST results are available for this feature:

BLAST of CV090489 vs. DB:swissprot:display
BLAST of CV090489 vs. Populus trichocarpa peptide v2.0
BLAST of CV090489 vs. P. persica 1.0 peptide
BLAST of CV090489 vs. TrEMBL
BLAST of CV090489 vs. Vitis vinifera peptide
BLAST of CV090489 vs. TAIR peptide

BLAST of CV090489 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
RPO1B_TOBAC	2.743e-60	89.34	DNA-directed RNA polymerase 1B, mitochondrial OS=N...	[more]
RPOT2_NICSY	3.033e-59	87.70	DNA-directed RNA polymerase 2, chloroplastic/mitoc...	[more]
RPO2A_TOBAC	3.033e-59	87.70	DNA-directed RNA polymerase 2A (Fragment) OS=Nicot...	[more]
RPOT1_NICSY	3.961e-59	88.52	DNA-directed RNA polymerase 1, mitochondrial OS=Ni...	[more]
RPO1A_TOBAC	3.961e-59	88.52	DNA-directed RNA polymerase 1A (Fragment) OS=Nicot...	[more]
RPO2B_TOBAC	1.505e-58	86.89	DNA-directed RNA polymerase 2B, chloroplastic/mito...	[more]
RPOT1_ARATH	1.193e-55	83.61	DNA-directed RNA polymerase 1, mitochondrial OS=Ar...	[more]
RPO3B_TOBAC	1.722e-54	81.15	DNA-directed RNA polymerase 3B, chloroplastic OS=N...	[more]
RPOT3_NICSY	5.011e-54	81.97	DNA-directed RNA polymerase 3, chloroplastic OS=Ni...	[more]
RPO3A_TOBAC	5.011e-54	81.97	DNA-directed RNA polymerase 3A, chloroplastic OS=N...	[more]

BLAST of CV090489 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 6


Match Name	E-value	Identity
POPTR_0010s14650.1	5.239e-61	90.98	[more]
POPTR_0008s11200.1	9.880e-60	89.34	[more]
POPTR_0017s14590.1	2.201e-59	87.70	[more]
POPTR_0004s11050.1	3.754e-59	87.70	[more]
POPTR_0018s11230.1	4.445e-52	77.87	[more]
POPTR_0006s19490.1	1.430e-50	77.05	[more]

BLAST of CV090489 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 3


Match Name	E-value	Identity
ppa000780m	7.427e-62	90.16	[more]
ppa000719m	1.549e-59	86.89	[more]
ppa000868m	2.829e-53	78.69	[more]

BLAST of CV090489 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
D7TA90\|D7TA90_VITVI	3.290e-59	90.98	Whole genome shotgun sequence of line PN40024, sca...	[more]
P93661\|P93661_CHEAL	5.612e-59	89.34	DNA-directed RNA polymerase OS=Chenopodium album P...	[more]
B9T5S6\|B9T5S6_RICCO	5.612e-59	89.34	DNA-directed RNA polymerase OS=Ricinus communis GN...	[more]
B9HWT3\|B9HWT3_POPTR	7.329e-59	90.98	DNA-directed RNA polymerase OS=Populus trichocarpa...	[more]
C5X2G2\|C5X2G2_SORBI	6.204e-58	88.52	DNA-directed RNA polymerase OS=Sorghum bicolor GN=...	[more]
D7SML3\|D7SML3_VITVI	8.103e-58	86.89	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9HIV5\|B9HIV5_POPTR	1.382e-57	89.34	DNA-directed RNA polymerase OS=Populus trichocarpa...	[more]
B9RLF2\|B9RLF2_RICCO	2.358e-57	86.89	DNA-directed RNA polymerase OS=Ricinus communis GN...	[more]
B9N1V3\|B9N1V3_POPTR	3.079e-57	87.70	DNA-directed RNA polymerase OS=Populus trichocarpa...	[more]
Q84LK6\|Q84LK6_ORYSJ	4.022e-57	88.52	DNA-directed RNA polymerase OS=Oryza sativa subsp....	[more]

BLAST of CV090489 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 3


Match Name	E-value	Identity	Description
GSVIVT01010122001	1.422e-61	90.98	assembled CDS	[more]
GSVIVT01036518001	3.501e-60	86.89	assembled CDS	[more]
GSVIVT01023660001	1.289e-54	81.97	assembled CDS	[more]

BLAST of CV090489 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 5


Match Name	E-value	Identity	Description
AT1G68990.2	1.173e-56	83.61	\| Symbols: MGP3 \| male gametophyte defective 3 \| c...	[more]
AT1G68990.1	1.173e-56	83.61	\| Symbols: MGP3 \| male gametophyte defective 3 \| c...	[more]
AT2G24120.1	1.434e-54	81.15	\| Symbols: PDE319, SCA3 \| DNA/RNA polymerases supe...	[more]
AT5G15700.1	5.451e-54	79.51	\| Symbols: \| DNA/RNA polymerases superfamily prot...	[more]
AT5G15700.2	3.095e-49	79.46	\| Symbols: \| DNA/RNA polymerases superfamily prot...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 33..48 score
None	No IPR available	GENE3D	1.10.150.20	no description	coord: 7..29 score: 0.0
None	No IPR available	GENE3D	3.30.70.370	no description	coord: 30..111 score: 7.5
None	No IPR available	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..122 score: 4.6
IPR002092	DNA-directed RNA polymerase, bacteriophage type	PANTHER	PTHR10102	T3/T7 BACTERIOPHAGE-RELATED MITOCHODRIAL DNA-DIRECTED RNA POLYMERASE	coord: 4..114 score: 2
IPR002092	DNA-directed RNA polymerase, bacteriophage type	PFAM	PF00940	RNA_pol	coord: 8..122 score: 1.4

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV090489 ID=CV090489; Name=CV090489; organism=Vaccinium corymbosum; type=EST; length=850bp
CTTCTCTCCAGGTCTTGACGCTACAACGTGAAACTGACAAGGTCATGGGA
AAGAGGCAGAGAACCGCTTTCCCTCCAAATTTCGTTCACTCTCTTGATGG
GTCCCACATGATGATGACTGCTGTTGCCTGTAAGGAGGCAGGCTTAAATT
TTGCAGGAGTCCATGATTCTTATTGGACGCATGCATGTGACGTTGACAAA
ATGAATACAATACTCAGAGAAAAATTTGTTGAACTTTATGAGGCGCCAAT
TCTGGAAGATTTGTTGGAGAGCTTTCAAAAATCATTCCCGACGTTGAATT
TCCCTCCGTTACCAGAGCGGGGAGACTTTGATCTGAGAGAGGTGTTGAAA
TCTCCTTATTTTTTCAACTGACCGAAACAAGTACTTCACATGCAGCAGTT
CGCCTGTTCATTCTGTGATTGTCCTCCGCCTCCATCTTACGATGACTAAG
TGATGGCACTTGTACTATTTCGGTCTATGGTCACAGCAATTTGGGAGGTA
AGTTATTCTGCTACTCCATGTAGAAAAGGAGGAAGAAGGAAAGCAATATG
ACTTGAAGGTCAGTGCTGCTATGTTGTACATAAAACAGAGAAAATGTCGT
CGATGGTTAGATGATGACGTTTTCTTTCCATCAAAGGACGAGAGATATCT
CAATCAGATGATTCTTAACAAAGGTTTCGTACCCGAGGAAGCTGTAGAGG
AAATCAAGCTCCAGAAATGTAGAAGGAAATTGTATTCTTGTGTAACCTCT
GGCGCATTGTTTGTTACATGGCGGACATTGCTCTCTATTTTCCCGAGACT
TATATTTGTCCCGAGTCTCTATTTTTTTCGGAATTTTAGTAGCGAATAAA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed 5'-3' RNA polymerase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006350	transcription

Vocabulary: **KEGG ORTHOLOGY**
Term	Definition
K10908	POLRMT, RPO41; DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6]

Vocabulary: **INTERPRO**
Term	Definition
IPR002092	DNA-dir_Rpol_phage-type
noIPR	unintegrated