CV090562 | GDV

EST Overview


Name	CV090562
Unique Name	CV090562
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	767

Libraries


Library Name	Type
LIBEST_014530 cDNA cold acclimated Bluecrop library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide	2011-02-10
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of CV090562 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0002s23170.1 ()

HSP 1 Score: 107.071 bits (266), Expect = 1.282e-23
Identity = 52/73 (71.23%), Postives = 59/73 (80.82%), Query Frame = 2

Query:    5 FGTQQGGQEDMEQRGQSSQEPVVEVITPDVYKGYGADGSQGPFSGIWSRTLRVKITRRDGFERLDVRIPVRHL 223
            +G Q+   +  EQR QS Q+PVVEVITP+VY GYGAD S+GPFSGIWSRTLRVKIT RDGFE+LDVRIP   L
Sbjct:  385 YGIQRRTPDYTEQRSQSPQDPVVEVITPEVYGGYGADNSRGPFSGIWSRTLRVKITGRDGFEKLDVRIPAGFL 457

[Close]

BLAST of CV090562 vs. P. persica 1.0 peptide
Match: ppa004861m ()

HSP 1 Score: 105.916 bits (263), Expect = 2.012e-23
Identity = 50/73 (68.49%), Postives = 59/73 (80.82%), Query Frame = 2

Query:    5 FGTQQGGQEDMEQRGQSSQEPVVEVITPDVYKGYGADGSQGPFSGIWSRTLRVKITRRDGFERLDVRIPVRHL 223
            +  Q+  ++D EQ+ QS Q+P+VEVITPDVY  YGADGS+G FSGIWSRTLRVKIT RDGFE+LDVRIP   L
Sbjct:  369 YSLQRRVKDDAEQKDQSPQDPIVEVITPDVYNNYGADGSRGSFSGIWSRTLRVKITGRDGFEKLDVRIPAGFL 441

[Close]

BLAST of CV090562 vs. P. persica 1.0 peptide
Match: ppa004779m ()

HSP 1 Score: 105.916 bits (263), Expect = 2.012e-23
Identity = 50/73 (68.49%), Postives = 59/73 (80.82%), Query Frame = 2

Query:    5 FGTQQGGQEDMEQRGQSSQEPVVEVITPDVYKGYGADGSQGPFSGIWSRTLRVKITRRDGFERLDVRIPVRHL 223
            +  Q+  ++D EQ+ QS Q+P+VEVITPDVY  YGADGS+G FSGIWSRTLRVKIT RDGFE+LDVRIP   L
Sbjct:  373 YSLQRRVKDDAEQKDQSPQDPIVEVITPDVYNNYGADGSRGSFSGIWSRTLRVKITGRDGFEKLDVRIPAGFL 445

[Close]

BLAST of CV090562 vs. TrEMBL
Match: B9GU77|B9GU77_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1072847 PE=4 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.725e-21
Identity = 52/73 (71.23%), Postives = 59/73 (80.82%), Query Frame = 2

Query:    5 FGTQQGGQEDMEQRGQSSQEPVVEVITPDVYKGYGADGSQGPFSGIWSRTLRVKITRRDGFERLDVRIPVRHL 223
            +G Q+   +  EQR QS Q+PVVEVITP+VY GYGAD S+GPFSGIWSRTLRVKIT RDGFE+LDVRIP   L
Sbjct:  385 YGIQRRTPDYTEQRSQSPQDPVVEVITPEVYGGYGADNSRGPFSGIWSRTLRVKITGRDGFEKLDVRIPAGFL 457

[Close]

BLAST of CV090562 vs. TrEMBL
Match: D7U8T5|D7U8T5_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_124.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00013539001 PE=4 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.109e-19
Identity = 47/73 (64.38%), Postives = 59/73 (80.82%), Query Frame = 2

Query:    5 FGTQQGGQEDMEQRGQSSQEPVVEVITPDVYKGYGADGSQGPFSGIWSRTLRVKITRRDGFERLDVRIPVRHL 223
            + +QQ  Q+D +QRGQ+SQ+PVVEV+TPD Y  YG DGS+ PF+GIWSRTLR+KIT RDG ++LDVRIP   L
Sbjct:  332 YSSQQRAQDDTQQRGQNSQDPVVEVLTPDAY--YGPDGSKVPFAGIWSRTLRIKITGRDGIDKLDVRIPAGFL 402

[Close]

BLAST of CV090562 vs. TrEMBL
Match: B9T359|B9T359_RICCO (Carboxyphosphonoenolpyruvate mutase, putative OS=Ricinus communis GN=RCOM_0050560 PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.754e-19
Identity = 50/73 (68.49%), Postives = 55/73 (75.34%), Query Frame = 2

Query:    5 FGTQQGGQEDMEQRGQSSQEPVVEVITPDVYKGYGADGSQGPFSGIWSRTLRVKITRRDGFERLDVRIPVRHL 223
            +  QQ   +D  QR QS Q+PVVEVITPDV   YGADGS+ PFSGIWSR LRVKIT RDGFE+LDVRIP   L
Sbjct:  341 YDIQQRTPDDTAQRIQSPQDPVVEVITPDVISNYGADGSRDPFSGIWSRKLRVKITGRDGFEKLDVRIPAGFL 413

[Close]

BLAST of CV090562 vs. TrEMBL
Match: A2Q4X2|A2Q4X2_MEDTR (Isocitrate lyase and phosphorylmutase OS=Medicago truncatula GN=MtrDRAFT_AC157893g9v2 PE=4 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.754e-19
Identity = 47/73 (64.38%), Postives = 56/73 (76.71%), Query Frame = 2

Query:    5 FGTQQGGQEDMEQRGQSSQEPVVEVITPDVYKGYGADGSQGPFSGIWSRTLRVKITRRDGFERLDVRIPVRHL 223
            +  QQ  Q D EQ  Q+ ++P+VEVITPDVY  YGADGS+ PFSGIWSRTLR+KIT RDG E+LD+RIP   L
Sbjct:  360 YSIQQREQVDTEQTSQTIEDPIVEVITPDVYNKYGADGSRDPFSGIWSRTLRIKITGRDGVEKLDLRIPAGFL 432

[Close]

BLAST of CV090562 vs. TrEMBL
Match: D7LJY6|D7LJY6_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_903700 PE=4 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.239e-11
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 2

Query:    5 FGTQQGGQEDMEQRGQSSQEPVVEVITPDVYKGYGADGSQGPFSGIWSRTLRVKITRRDGFERLDVRIPVRHL 223
            +G Q+  Q+D EQR    ++P+VEVITP+VY     +  + PFS IWSR+LR+KI  RDGFE+LDVRIP   L
Sbjct:  368 YGNQRVAQDDPEQR----EDPIVEVITPEVY-----NEPRNPFSRIWSRSLRIKIIGRDGFEKLDVRIPAGFL 431

[Close]

BLAST of CV090562 vs. TrEMBL
Match: Q9ZW77|Q9ZW77_ARATH (Putative carboxyphosphonoenolpyruvate mutase OS=Arabidopsis thaliana GN=At2g43180 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.515e-9
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 2

Query:    5 FGTQQGGQEDMEQRGQSSQEPVVEVITPDVYKGYGADGSQGPFSGIWSRTLRVKITRRDGFERLDVRIPVRHL 223
            +  Q+  ++D EQR    ++ +VEVITP+VY     +  + PFS IWSR+LR+KI  RDGFE+LDVRIPV  L
Sbjct:  391 YRNQRVAKDDPEQR----EDLIVEVITPEVY-----NEPRNPFSRIWSRSLRIKIIGRDGFEKLDVRIPVSPL 454

[Close]

BLAST of CV090562 vs. TrEMBL
Match: Q3E6R0|Q3E6R0_ARATH (Putative uncharacterized protein At2g43180.4 OS=Arabidopsis thaliana GN=At2g43180 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.515e-9
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 2

Query:    5 FGTQQGGQEDMEQRGQSSQEPVVEVITPDVYKGYGADGSQGPFSGIWSRTLRVKITRRDGFERLDVRIPVRHL 223
            +  Q+  ++D EQR    ++ +VEVITP+VY     +  + PFS IWSR+LR+KI  RDGFE+LDVRIPV  L
Sbjct:  369 YRNQRVAKDDPEQR----EDLIVEVITPEVY-----NEPRNPFSRIWSRSLRIKIIGRDGFEKLDVRIPVSPL 432

[Close]

BLAST of CV090562 vs. TrEMBL
Match: Q8GYI4|Q8GYI4_ARATH (Putative carboxyphosphonoenolpyruvate mutase OS=Arabidopsis thaliana GN=At2g43180 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.407e-9
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 2

Query:    5 FGTQQGGQEDMEQRGQSSQEPVVEVITPDVYKGYGADGSQGPFSGIWSRTLRVKITRRDGFERLDVRIPVRHL 223
            +  Q+  ++D EQR    ++ +VEVITP+VY     +  + PFS IWSR+LR+KI  RDGFE+LDVRIP   L
Sbjct:  369 YRNQRVAKDDPEQR----EDLIVEVITPEVY-----NEPRNPFSRIWSRSLRIKIIGRDGFEKLDVRIPAGFL 432

[Close]

BLAST of CV090562 vs. TrEMBL
Match: Q3EBH7|Q3EBH7_ARATH (Putative uncharacterized protein At2g43180.2 OS=Arabidopsis thaliana GN=At2g43180 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.407e-9
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 2

Query:    5 FGTQQGGQEDMEQRGQSSQEPVVEVITPDVYKGYGADGSQGPFSGIWSRTLRVKITRRDGFERLDVRIPVRHL 223
            +  Q+  ++D EQR    ++ +VEVITP+VY     +  + PFS IWSR+LR+KI  RDGFE+LDVRIP   L
Sbjct:  369 YRNQRVAKDDPEQR----EDLIVEVITPEVY-----NEPRNPFSRIWSRSLRIKIIGRDGFEKLDVRIPAGFL 432

[Close]

BLAST of CV090562 vs. TrEMBL
Match: Q3EBH6|Q3EBH6_ARATH (Putative uncharacterized protein At2g43180.3 OS=Arabidopsis thaliana GN=At2g43180 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.407e-9
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 2

Query:    5 FGTQQGGQEDMEQRGQSSQEPVVEVITPDVYKGYGADGSQGPFSGIWSRTLRVKITRRDGFERLDVRIPVRHL 223
            +  Q+  ++D EQR    ++ +VEVITP+VY     +  + PFS IWSR+LR+KI  RDGFE+LDVRIP   L
Sbjct:  368 YRNQRVAKDDPEQR----EDLIVEVITPEVY-----NEPRNPFSRIWSRSLRIKIIGRDGFEKLDVRIPAGFL 431

[Close]

BLAST of CV090562 vs. Vitis vinifera peptide
Match: GSVIVT01013539001 (assembled CDS)

HSP 1 Score: 100.138 bits (248), Expect = 9.506e-22
Identity = 47/73 (64.38%), Postives = 59/73 (80.82%), Query Frame = 2

Query:    5 FGTQQGGQEDMEQRGQSSQEPVVEVITPDVYKGYGADGSQGPFSGIWSRTLRVKITRRDGFERLDVRIPVRHL 223
            + +QQ  Q+D +QRGQ+SQ+PVVEV+TPD Y  YG DGS+ PF+GIWSRTLR+KIT RDG ++LDVRIP   L
Sbjct:  332 YSSQQRAQDDTQQRGQNSQDPVVEVLTPDAY--YGPDGSKVPFAGIWSRTLRIKITGRDGIDKLDVRIPAGFL 402

[Close]

BLAST of CV090562 vs. TAIR peptide
Match: AT2G43180.4 (| Symbols: | Phosphoenolpyruvate carboxylase family protein | chr2:17953832-17955774 REVERSE LENGTH=466)

HSP 1 Score: 67.3958 bits (163), Expect = 9.897e-12
Identity = 37/73 (50.68%), Postives = 50/73 (68.49%), Query Frame = 2

Query:    5 FGTQQGGQEDMEQRGQSSQEPVVEVITPDVYKGYGADGSQGPFSGIWSRTLRVKITRRDGFERLDVRIPVRHL 223
            +  Q+  ++D EQR    ++ +VEVITP+VY     +  + PFS IWSR+LR+KI  RDGFE+LDVRIPV  L
Sbjct:  369 YRNQRVAKDDPEQR----EDLIVEVITPEVY-----NEPRNPFSRIWSRSLRIKIIGRDGFEKLDVRIPVSPL 432

[Close]

BLAST of CV090562 vs. TAIR peptide
Match: AT2G43180.2 (| Symbols: | Phosphoenolpyruvate carboxylase family protein | chr2:17953832-17955774 REVERSE LENGTH=451)

HSP 1 Score: 65.855 bits (159), Expect = 2.880e-11
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 2

Query:    5 FGTQQGGQEDMEQRGQSSQEPVVEVITPDVYKGYGADGSQGPFSGIWSRTLRVKITRRDGFERLDVRIPVRHL 223
            +  Q+  ++D EQR    ++ +VEVITP+VY     +  + PFS IWSR+LR+KI  RDGFE+LDVRIP   L
Sbjct:  369 YRNQRVAKDDPEQR----EDLIVEVITPEVY-----NEPRNPFSRIWSRSLRIKIIGRDGFEKLDVRIPAGFL 432

[Close]

BLAST of CV090562 vs. TAIR peptide
Match: AT2G43180.3 (| Symbols: | Phosphoenolpyruvate carboxylase family protein | chr2:17953719-17955774 REVERSE LENGTH=478)

HSP 1 Score: 65.855 bits (159), Expect = 2.880e-11
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 2

Query:    5 FGTQQGGQEDMEQRGQSSQEPVVEVITPDVYKGYGADGSQGPFSGIWSRTLRVKITRRDGFERLDVRIPVRHL 223
            +  Q+  ++D EQR    ++ +VEVITP+VY     +  + PFS IWSR+LR+KI  RDGFE+LDVRIP   L
Sbjct:  368 YRNQRVAKDDPEQR----EDLIVEVITPEVY-----NEPRNPFSRIWSRSLRIKIIGRDGFEKLDVRIPAGFL 431

[Close]

BLAST of CV090562 vs. TAIR peptide
Match: AT2G43180.1 (| Symbols: | Phosphoenolpyruvate carboxylase family protein | chr2:17953719-17955774 REVERSE LENGTH=479)

HSP 1 Score: 65.855 bits (159), Expect = 2.880e-11
Identity = 36/73 (49.32%), Postives = 49/73 (67.12%), Query Frame = 2

Query:    5 FGTQQGGQEDMEQRGQSSQEPVVEVITPDVYKGYGADGSQGPFSGIWSRTLRVKITRRDGFERLDVRIPVRHL 223
            +  Q+  ++D EQR    ++ +VEVITP+VY     +  + PFS IWSR+LR+KI  RDGFE+LDVRIP   L
Sbjct:  369 YRNQRVAKDDPEQR----EDLIVEVITPEVY-----NEPRNPFSRIWSRSLRIKIIGRDGFEKLDVRIPAGFL 432

The following BLAST results are available for this feature:

BLAST of CV090562 vs. Populus trichocarpa peptide v2.0
BLAST of CV090562 vs. P. persica 1.0 peptide
BLAST of CV090562 vs. TrEMBL
BLAST of CV090562 vs. Vitis vinifera peptide
BLAST of CV090562 vs. TAIR peptide

BLAST of CV090562 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
POPTR_0002s23170.1	1.282e-23	71.23		[more]

BLAST of CV090562 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
ppa004861m	2.012e-23	68.49		[more]
ppa004779m	2.012e-23	68.49		[more]

BLAST of CV090562 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
B9GU77\|B9GU77_POPTR	1.725e-21	71.23	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7U8T5\|D7U8T5_VITVI	2.109e-19	64.38	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9T359\|B9T359_RICCO	2.754e-19	68.49	Carboxyphosphonoenolpyruvate mutase, putative OS=R...	[more]
A2Q4X2\|A2Q4X2_MEDTR	2.754e-19	64.38	Isocitrate lyase and phosphorylmutase OS=Medicago ...	[more]
D7LJY6\|D7LJY6_ARALY	1.239e-11	53.42	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q9ZW77\|Q9ZW77_ARATH	1.515e-9	50.68	Putative carboxyphosphonoenolpyruvate mutase OS=Ar...	[more]
Q3E6R0\|Q3E6R0_ARATH	1.515e-9	50.68	Putative uncharacterized protein At2g43180.4 OS=Ar...	[more]
Q8GYI4\|Q8GYI4_ARATH	4.407e-9	49.32	Putative carboxyphosphonoenolpyruvate mutase OS=Ar...	[more]
Q3EBH7\|Q3EBH7_ARATH	4.407e-9	49.32	Putative uncharacterized protein At2g43180.2 OS=Ar...	[more]
Q3EBH6\|Q3EBH6_ARATH	4.407e-9	49.32	Putative uncharacterized protein At2g43180.3 OS=Ar...	[more]

BLAST of CV090562 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1


Match Name	E-value	Identity	Description
GSVIVT01013539001	9.506e-22	64.38	assembled CDS	[more]

BLAST of CV090562 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 4


Match Name	E-value	Identity	Description
AT2G43180.4	9.897e-12	50.68	\| Symbols: \| Phosphoenolpyruvate carboxylase fami...	[more]
AT2G43180.2	2.880e-11	49.32	\| Symbols: \| Phosphoenolpyruvate carboxylase fami...	[more]
AT2G43180.3	2.880e-11	49.32	\| Symbols: \| Phosphoenolpyruvate carboxylase fami...	[more]
AT2G43180.1	2.880e-11	49.32	\| Symbols: \| Phosphoenolpyruvate carboxylase fami...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21631	ISOCITRATE LYASE/MALATE SYNTHASE	coord: 23..74 score: 5
None	No IPR available	PANTHER	PTHR21631:SF4	CARBOXYPHOSPHONOENOLPYRUVATE MUTASE	coord: 23..74 score: 5

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV090562 ID=CV090562; Name=CV090562; organism=Vaccinium corymbosum; type=EST; length=767bp
CGCATTTGGTACTCAACAAGGGGGCCAGGAGGATATGGAGCAGAGAGGTC
AAAGTTCACAAGAGCCTGTGGTAGAAGTGATAACTCCTGATGTATACAAG
GGCTACGGTGCAGATGGTTCACAAGGTCCATTTTCAGGGATCTGGTCGCG
AACATTGAGAGTCAAAATTACTAGACGAGATGGATTTGAAAGACTTGATG
TTCGGATTCCTGTGAGACATTTATTACTTTCCATGTCACCTGGATACCAT
ATAACCATTGTCCCAATATCACATGATTAACGGCTAAAATGCTCGCATTA
GAATTCAACAATGGTTGCACTATATTTGTATTGCAATAATTGTATTATTA
GGGATAAAAATTACTATCCTAATACCACACTTGATATGCTCTGAAATATC
TAGAATCTAGTGATTGATCAGATGGTCTGAATTACCTGGTCCAGTTGATC
TGGTTGGCAAAAATTCATTGGGGATTGACCAAAAAAGTATAAATGCATAT
AAAAGGACTAACCCCTTTGCTATTTCTTGTTCATCTAGTACAAATTAGAC
AAAATCTCTTTCATAACATATTTTACCTCACACACATTTTGGTACGTCAA
ATGGAAGAATGATATTTGACTTTTGGTAAGTGCTACACATGGTTTTACAC
CATACCACTTTGTATATTTCAAGTTTATCCTTTCTTCTGGCAGGACTGAG
AGCGGCCACTTTGTGCATAGCCCTTTACATCCATCGGTTGGGGATTTTGT
GGGTACTGTTATTGGTG

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
noIPR	unintegrated