CV090621 | GDV

EST Overview


Name	CV090621
Unique Name	CV090621
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	508

Libraries


Library Name	Type
LIBEST_014530 cDNA cold acclimated Bluecrop library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

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BLAST of CV090621 vs. Vitis vinifera peptide
Match: GSVIVT01010282001 (assembled CDS)

HSP 1 Score: 56.225 bits (134), Expect = 7.809e-9
Identity = 42/105 (40.00%), Postives = 52/105 (49.52%), Query Frame = 3

Query:  102 MKRSHIEISDDEWDNLSFNPDRVLKXXXXXXXXXIESFAFR-SSSELQP--VADVSSDDSLLAEVENFDGNXXXXXXXXXXXXTTAVRLPSTGRGRKFVVDEDSD 407
            MKR   EISDDEWDN SF   R LK         IESF++R    ++ P  V+D SSDD +  + +  D +               V      RGR+FVVDEDSD
Sbjct:    1 MKRDFTEISDDEWDNHSFKLSRALK-KSQGAPPPIESFSYRPEDPQVSPEDVSDGSSDDCVEIKEDLEDDD-------------AEVLAAPVSRGRRFVVDEDSD 91

The following BLAST results are available for this feature:

BLAST of CV090621 vs. Vitis vinifera peptide

BLAST of CV090621 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1


Match Name	E-value	Identity	Description
GSVIVT01010282001	7.809e-9	40.00	assembled CDS	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 22..37 score
None	No IPR available	SEG	seg	seg	coord: 41..49 score: NAcoord: 84..95 score: NAcoord: 119..146 score
None	No IPR available	SEG	seg	seg	coord: 1..36 score: NAcoord: 51..62 score
None	No IPR available	SEG	seg	seg	coord: 8..16 score: NAcoord: 59..74 score

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV090621 ID=CV090621; Name=CV090621; organism=Vaccinium corymbosum; type=EST; length=508bp
TTCCCATTTCCAGTCCCAAAAAACCCCACCTCTCCTCCTTCTCCCTCTCC
CCTTGAAAACCTATCCTTCCATTCCATTCCACCATTTCTAGGGTTTCTCA
AATGAAGCGCTCTCACATCGAAATCTCGGACGACGAGTGGGATAACCTTT
CCTTCAACCCCGACCGTGTCCTCAAACCCTCCAATCCCCCTTCTCCTCCT
CCCATCGAGTCCTTCGCATTTCGATCATCATCGGAGCTTCAACCCGTTGC
AGATGTCAGCAGCGACGATTCACTTCTCGCAGAAGTAGAAAACTTTGACG
GAAACTTGCTTCAAGACTTGGAGGACGATGACGTGGAGGAGACGACCGCC
GTCCGGCTGCCGTCAACAGGTCGTGGACGGAAGTTTGTTGTTGATGAGGA
CAGTGACTGTGAAGTGGTTCAAGTGAAGGAGGAAGAGAAAGAAGAGGAGG
AGGAGGAGATAGAGGAGATGGTGGAGGAGGAGGAGGATGTGGTTGGGAAG
GNTCTGNA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
noIPR	unintegrated