CV091033 | GDV

EST Overview


Name	CV091033
Unique Name	CV091033
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	733

Libraries


Library Name	Type
LIBEST_014531 cDNA non acclimated Bluecrop library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Swissprot	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide	2011-02-10
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

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BLAST of CV091033 vs. DB:swissprot:display
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.796e-18
Identity = 53/125 (42.40%), Postives = 73/125 (58.40%), Query Frame = 2

Query:  359 EYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKG-PDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTK 730
            E+ V M C  CV+AV   L  V GV+NVDV L NQ+V +  + P + +   LE TGR+A L G G  +   + AAV+  +G   I GVVR  Q++ EL  IE    GL  G HG  ++++GDLT+
Sbjct:   15 EFAVQMSCQSCVDAVHKTLKGVAGVQNVDVQLENQMVLVQTTLPSQEVQALLESTGRQAVLKGMGSSQLQNLGAAVAILEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTR 139

[Close]

BLAST of CV091033 vs. DB:swissprot:display
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.869e-17
Identity = 51/125 (40.80%), Postives = 72/125 (57.60%), Query Frame = 2

Query:  359 EYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGP-DIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTK 730
            E+ V M C  CV+AV   L    GV+NV+V L NQ+V +  + P + +   LE TGR+A L G G  +   + AAV+  +G   + GVVR  Q++ EL  IE    GL  G HG  ++++GDLTK
Sbjct:   15 EFTVQMSCQSCVDAVHKTLKGAAGVQNVEVQLENQMVLVQTTLPSQEVQALLESTGRQAVLKGMGSSQLKNLGAAVAIMEGSGTVQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTK 139

[Close]

BLAST of CV091033 vs. DB:swissprot:display
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.297e-16
Identity = 48/128 (37.50%), Postives = 72/128 (56.25%), Query Frame = 2

Query:  353 LTEYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARL--IGQGILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTK 730
            + E+ V M C  CV+AV   L  V G+++V+V L NQ+V +  + P + +   LE TGR+A L  +G G  ++   + A+    GP + GVVR  Q+  E   IE    GL  G HG  +++FGDLT+
Sbjct:   13 MLEFAVQMTCQSCVDAVSRSLQGVAGIQSVEVQLENQMVLVQTTLPSQVVQALLEDTGRQAVLKGMGSGRWQNLEAAVAILGGSGP-VQGVVRFLQLTPERCLIEGTIDGLKPGLHGLHVHQFGDLTR 139

[Close]

BLAST of CV091033 vs. DB:swissprot:display
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.621e-15
Identity = 49/124 (39.52%), Postives = 71/124 (57.26%), Query Frame = 2

Query:  359 EYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGP-DIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLT 727
            E+ V M C  CV+AV+  L  V GV++V+V L +Q+V +  + P + +   LE TGR+A L G G  +   + AAV+   GP  + GVVR  Q+  E   IE    GL  G HG  ++++GDLT
Sbjct:   15 EFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLT 138

[Close]

BLAST of CV091033 vs. DB:swissprot:display
Match: CCS1_DEBHA (Superoxide dismutase 1 copper chaperone OS=Debaryomyces hansenii GN=CCS1 PE=3 SV=2)

HSP 1 Score: 61.6178 bits (148), Expect = 5.065e-9
Identity = 37/128 (28.91%), Postives = 66/128 (51.56%), Query Frame = 2

Query:  362 YMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGPDI----FGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTKG 733
            + V M+C  CV++V + L +++G+   D+DL + +V   GS P   + +A++ TG+ A + G G      V   +  F   DI     G+ R+  V      ++   +GL +G +  SI + G+L+KG
Sbjct:    9 FAVPMECQSCVDSVSSSLKSLNGISKYDIDLKSNLVTTEGSVPPSEIVKAIQSTGKDAIIRGTGAPNSAAV-CILESFDPKDIQQPVKGLARIVSVGANDLVVDLTVNGLPQGVYYPSIRKSGNLSKG 135

[Close]

BLAST of CV091033 vs. DB:swissprot:display
Match: CCS1_ASHGO (Superoxide dismutase 1 copper chaperone OS=Ashbya gossypii GN=CCS1 PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 8.639e-9
Identity = 41/126 (32.54%), Postives = 60/126 (47.62%), Query Frame = 2

Query:  362 YMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVS-EFKGPDIFGVVRLAQVNMELARIEADFSGL-SRGKHGWSINEFGDLTKG 733
            Y V M C  C   +   L  V GV+ V  DL  Q+V + G +P  ++ +AL  TGR A L G G  +   V+   S    GP + G+VR  QV       +   +GL    ++  SI   GD+++G
Sbjct:   12 YAVPMHCGDCTGEISRALRAVPGVQEVTPDLERQLVAVRGIAPPSSIVQALAATGRDAILRGSGEPDSAAVAILESASAGGPPVRGLVRAVQVAPNKTLFDITLNGLPGPAQYYASIRASGDVSRG 137

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BLAST of CV091033 vs. DB:swissprot:display
Match: CCS1_KLULA (Superoxide dismutase 1 copper chaperone OS=Kluyveromyces lactis GN=CCS1 PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 3.283e-8
Identity = 35/128 (27.34%), Postives = 64/128 (50.00%), Query Frame = 2

Query:  362 YMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGP---DIFGVVRLAQVNMELARIEADFSGLSR-GKHGWSINEFGDLTKG 733
            Y V+M C+ C N ++  L  V+G+KNV  D+ + ++ + G +    +  AL+  GR   + G G      VS       GP    + G+VR+ +V  +    + + +G+ + G +  S+   GDL++G
Sbjct:   13 YAVEMHCESCTNDIQKCLKDVNGIKNVTFDIKDNLMNVEGHAAPSAIINALKNCGRDGIIRGTGKPNSAAVSILGQYTTGPFENTVKGLVRIVEVAQKKTFFDINLNGVEKPGLYYASVRASGDLSEG 140

[Close]

BLAST of CV091033 vs. DB:swissprot:display
Match: CCS1_YEAST (Superoxide dismutase 1 copper chaperone OS=Saccharomyces cerevisiae GN=CCS1 PE=1 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.248e-7
Identity = 37/133 (27.82%), Postives = 63/133 (47.37%), Query Frame = 2

Query:  362 YMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQG--------ILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGL-SRGKHGWSINEFGDLTKG 733
            Y + M C+ CVN +K  L  V G+ +++ D+  Q++ +  S    T+   L   G+ A + G G        ILE F     + + K   + G+ R+ QV       +   +G+   G +  SI+E GD++KG
Sbjct:   11 YAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGKPNSSAVAILETF-QKYTIDQKKDTAVRGLARIVQVGENKTLFDITVNGVPEAGNYHASIHEKGDVSKG 142

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BLAST of CV091033 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0001s08330.1 ()

HSP 1 Score: 262.692 bits (670), Expect = 1.697e-70
Identity = 135/185 (72.97%), Postives = 158/185 (85.41%), Query Frame = 2

Query:  185 KNLTF--PSLSITKSTLTPLLRLGLAKSSSRPPSALHMEAPSSDHKLSFQNNAVLPELLTEYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTKG 733
            +NL+F  PS S+  ST +     GL K+ ++PPSAL+ME P+S+H    Q+N  LPEL TE+MVDMKCDGCVN+VKNKL +V+GVKNV+VDL+NQVVRILGSSPV TMTEALEQTGR ARLIGQGI EDFLVSAAV+EFKGP+IFGVVR AQVNM+LARIEA+F+GLS GKHGWSINEFGDLT+G
Sbjct:   39 RNLSFLSPSSSLLSSTAS-----GLVKNLTQPPSALNMETPASNHMSISQDNVTLPELFTEFMVDMKCDGCVNSVKNKLQSVNGVKNVEVDLANQVVRILGSSPVNTMTEALEQTGRNARLIGQGIPEDFLVSAAVAEFKGPEIFGVVRFAQVNMDLARIEANFTGLSLGKHGWSINEFGDLTEG 218

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BLAST of CV091033 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0003s11830.1 ()

HSP 1 Score: 254.988 bits (650), Expect = 3.538e-68
Identity = 133/183 (72.68%), Postives = 153/183 (83.61%), Query Frame = 2

Query:  185 KNLTFPSLSITKSTLTPLLRLGLAKSSSRPPSALHMEAPSSDHKLSFQNNAVLPELLTEYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTKG 733
            +NL F S S   S+L    R GL K+ ++ PS+L M+  +S+ K   Q+N  LPE+LTE+MVDMKC+GCVN+V+NKL  V+GVKNV+VDL+NQVVRILGSSPVKTMTEALEQTGR ARLIGQGI EDFLVSAAV+EFKGPDIFGVVR AQVNMELARIEA FSG+S GKHGWSINEFGDLTKG
Sbjct:   39 ENLFFLSPS---SSLLTSARFGLVKNLTQRPSSLSMDTSTSNQKPISQDNGALPEILTEFMVDMKCEGCVNSVRNKLQAVNGVKNVEVDLANQVVRILGSSPVKTMTEALEQTGRNARLIGQGIPEDFLVSAAVAEFKGPDIFGVVRFAQVNMELARIEASFSGVSPGKHGWSINEFGDLTKG 218

[Close]

BLAST of CV091033 vs. P. persica 1.0 peptide
Match: ppa008639m ()

HSP 1 Score: 262.307 bits (669), Expect = 1.579e-70
Identity = 140/184 (76.09%), Postives = 161/184 (87.50%), Query Frame = 2

Query:  182 SKNLTFPSLSITKSTLTPLLRLGLAKSSSRPPSALHMEAPSSDHKLSFQNNAVLPELLTEYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTKG 733
            ++NL+F  LS T S L P  R  LA S +  PSA+HM+AP+S+ K S Q++A LPELLTEYMVDMKC+GCVN+VKNKL TVDGVK+V+VDL++QVVRILGS+PVKTMTE LEQTGRKARLIGQGI EDFLVSAAV+EFKGPDIFGVVRLAQVNMELARIEA+FSGL  GKHGWSINEFGD+T+G
Sbjct:   44 AQNLSF--LSSTPS-LKPN-RSCLATSFTNSPSAIHMDAPTSEQKPSLQSDAALPELLTEYMVDMKCEGCVNSVKNKLQTVDGVKSVEVDLNSQVVRILGSTPVKTMTEVLEQTGRKARLIGQGIPEDFLVSAAVAEFKGPDIFGVVRLAQVNMELARIEANFSGLPPGKHGWSINEFGDVTEG 223

[Close]

BLAST of CV091033 vs. TrEMBL
Match: Q6XZF8|Q6XZF8_SOLTU (Copper chaperone OS=Solanum tuberosum GN=CCS PE=4 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 6.370e-71
Identity = 139/186 (74.73%), Postives = 157/186 (84.41%), Query Frame = 2

Query:  182 SKNLTFPSLSITKSTLTPLLRLGLAKSSSR--PPSALHMEAPSSDHKLSFQNNAVLPELLTEYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTKG 733
            SKN+ F S+S +     P+ +L  AK+  +  PPSALHME PSS+H+ S  N  VLPELLTE+MVDM C GCVNAVK+KL TV+GVKNVDVDL NQVVRILGSSPVKTMTEALEQTGRKARLIGQG+ +DFL+SAAV+EFKGPDIFGVVRLAQVNMEL RIEA+FSGLS GKH WSINEFGDLT+G
Sbjct:   40 SKNIKFGSISSSN----PIFQLSFAKNLQKTSPPSALHMETPSSNHQTSSDNEVVLPELLTEFMVDMSCQGCVNAVKSKLQTVEGVKNVDVDLDNQVVRILGSSPVKTMTEALEQTGRKARLIGQGVPDDFLISAAVAEFKGPDIFGVVRLAQVNMELTRIEANFSGLSPGKHAWSINEFGDLTRG 221

[Close]

BLAST of CV091033 vs. TrEMBL
Match: Q9BBU5|Q9BBU5_SOYBN (Cu/Zn-superoxide dismutase copper chaperone OS=Glycine max GN=CCS PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 1.087e-70
Identity = 142/184 (77.17%), Postives = 159/184 (86.41%), Query Frame = 2

Query:  182 SKNLTFPSLSITKSTLTPLLRLGLAKSSSRPPSALHMEAPSSDHKLSFQNNAVLPELLTEYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTKG 733
            S + +FP  S + +   P  RLGL K+ + PPSALHM     DHKLS Q +AVLPELLTE+MVDMKC+GCVNAVKNKL  ++GVKNV+VDLSNQVVRILGS+PVKTMTEALEQTGRKARLIGQG+ EDFL+SAAVSEFKGPDIFGVVRLAQVNMELARIEA+FSGLS GKHGWSINEFGDLT+G
Sbjct:   24 SSSSSFPRSSQSPN---PQNRLGLVKTLATPPSALHM-----DHKLSSQPDAVLPELLTEFMVDMKCEGCVNAVKNKLNEINGVKNVEVDLSNQVVRILGSTPVKTMTEALEQTGRKARLIGQGVPEDFLISAAVSEFKGPDIFGVVRLAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRG 199

[Close]

BLAST of CV091033 vs. TrEMBL
Match: Q9ZSC1|Q9ZSC1_SOLLC (Putative copper/zinc superoxide dismutase copper chaperone (Fragment) OS=Solanum lycopersicum GN=CCS PE=2 SV=2)

HSP 1 Score: 265.388 bits (677), Expect = 3.495e-69
Identity = 138/183 (75.41%), Postives = 152/183 (83.06%), Query Frame = 2

Query:  185 KNLTFPSLSITKSTLTPLLRLGLAKSSSRPPSALHMEAPSSDHKLSFQNNAVLPELLTEYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTKG 733
            KNL F S+S + S L       L K S  PPSALHME  SS+H+ S  N  VLPELLTE+MVDM C GCV+AVK+KL TV+GVKNVDVDL NQVVRILGSSPVKTMTEALEQTGRKARLIGQG+ +DFL+SAAV+EFKGPDIFGVVRLAQVNMEL RIEA+FSGLS GKH WSINEFGDLT+G
Sbjct:   39 KNLKFGSISSSNSILQLSFAKNLQKKS--PPSALHMETHSSNHQTSSDNGVVLPELLTEFMVDMSCQGCVSAVKSKLQTVEGVKNVDVDLDNQVVRILGSSPVKTMTEALEQTGRKARLIGQGVPDDFLISAAVAEFKGPDIFGVVRLAQVNMELTRIEANFSGLSPGKHAWSINEFGDLTRG 219

[Close]

BLAST of CV091033 vs. TrEMBL
Match: B9RBX1|B9RBX1_RICCO (Superoxide dismutase copper chaperone, putative OS=Ricinus communis GN=RCOM_1682180 PE=4 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.495e-69
Identity = 139/183 (75.96%), Postives = 159/183 (86.89%), Query Frame = 2

Query:  188 NLTFPSLSITKSTLTPLLRLGLAKSSSRPPSALHMEAPSSDHKLSFQNNAVL-PELLTEYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTKG 733
            NL+F  LS + S+L    R GL K+ +RPPSA+ MEAP+SDHK + Q +++L PELLTE+MVDMKC+GCV AVKNKL TV+GVKNV+VDL NQVVR+LGSSPVK MTEALEQTGR ARLIGQG+ EDFLVSAAV+EFKGPDIFGVVR AQVNMELARIEA+FSGLS GKHGWSINEFGDLT+G
Sbjct:   47 NLSF--LSTSSSSLPS--RFGLVKNLTRPPSAVSMEAPTSDHKPNSQEDSILLPELLTEFMVDMKCEGCVGAVKNKLQTVNGVKNVEVDLGNQVVRVLGSSPVKIMTEALEQTGRTARLIGQGVPEDFLVSAAVAEFKGPDIFGVVRFAQVNMELARIEANFSGLSPGKHGWSINEFGDLTRG 225

[Close]

BLAST of CV091033 vs. TrEMBL
Match: B9GW33|B9GW33_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1073958 PE=4 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 4.724e-66
Identity = 133/183 (72.68%), Postives = 153/183 (83.61%), Query Frame = 2

Query:  185 KNLTFPSLSITKSTLTPLLRLGLAKSSSRPPSALHMEAPSSDHKLSFQNNAVLPELLTEYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTKG 733
            +NL F S S   S+L    R GL K+ ++ PS+L M+  +S+ K   Q+N  LPE+LTE+MVDMKC+GCVN+V+NKL  V+GVKNV+VDL+NQVVRILGSSPVKTMTEALEQTGR ARLIGQGI EDFLVSAAV+EFKGPDIFGVVR AQVNMELARIEA FSG+S GKHGWSINEFGDLTKG
Sbjct:   39 ENLFFLSPS---SSLLTSARFGLVKNLTQRPSSLSMDTSTSNQKPISQDNGALPEILTEFMVDMKCEGCVNSVRNKLQAVNGVKNVEVDLANQVVRILGSSPVKTMTEALEQTGRNARLIGQGIPEDFLVSAAVAEFKGPDIFGVVRFAQVNMELARIEASFSGVSPGKHGWSINEFGDLTKG 218

[Close]

BLAST of CV091033 vs. TrEMBL
Match: D7TWB1|D7TWB1_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_25.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00019902001 PE=4 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 1.985e-64
Identity = 124/148 (83.78%), Postives = 136/148 (91.89%), Query Frame = 2

Query:  290 MEAPSSDHKLSFQNNAVLPELLTEYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTKG 733
            M+A S++H  S QN+ VLPELLTE+MVDMKC+GCVNAVKNKL T+ GVKNV+VDLSNQVVR+LGSSPVKTM +ALEQTGR ARLIGQGI EDFLVSAAV+EFKGPDIFGVVRLAQVNMELARIEA FSGLS GKHGWSINEFGDLT+G
Sbjct:    1 MDASSTNHTSSSQNDVVLPELLTEFMVDMKCEGCVNAVKNKLQTISGVKNVEVDLSNQVVRVLGSSPVKTMADALEQTGRNARLIGQGIPEDFLVSAAVAEFKGPDIFGVVRLAQVNMELARIEASFSGLSSGKHGWSINEFGDLTRG 148

[Close]

BLAST of CV091033 vs. TrEMBL
Match: D7KND5|D7KND5_ARALY (Cu/Zn-superoxide dismutase copper chaperone OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_471402 PE=4 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 8.077e-58
Identity = 121/184 (65.76%), Postives = 146/184 (79.35%), Query Frame = 2

Query:  182 SKNLTFPSLSITKSTLTPLLRLGLAKSSSRPPSALHMEAPSSDHKLSFQNNAVLPELLTEYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTKG 733
            S++L F  LS +        RLGL +S +  P    +   +SD  L  Q + V+P+LLTE+MVDMKC+GCVNAVKNKL T++G++NV+VDLSNQVVRILGSSPVK MT+ALEQTGRKARLIGQG+ +DFLVSAAV+EFKGPDIFGVVR AQV+MELARIEA+F+GLS G H W INE+GDLT G
Sbjct:   38 SQSLNFSFLSRSSPR-----RLGLTRSFASTPMTTVL---TSDRNLP-QEDRVMPQLLTEFMVDMKCEGCVNAVKNKLETIEGIENVEVDLSNQVVRILGSSPVKAMTQALEQTGRKARLIGQGVPQDFLVSAAVAEFKGPDIFGVVRFAQVSMELARIEANFTGLSPGIHSWCINEYGDLTNG 212

[Close]

BLAST of CV091033 vs. TrEMBL
Match: Q9SPD6|Q9SPD6_ARATH (Cu/Zn-superoxide dismutase copper chaperone (Fragment) OS=Arabidopsis thaliana GN=CCS PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.523e-56
Identity = 120/184 (65.22%), Postives = 144/184 (78.26%), Query Frame = 2

Query:  182 SKNLTFPSLSITKSTLTPLLRLGLAKSSSRPPSALHMEAPSSDHKLSFQNNAVLPELLTEYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTKG 733
            S++L F  LS +   L     LGL++S    P A    A +SD  L  Q +  +P+LLTE+MVDM C+GCVNAVKNKL T++G++ V+VDLSNQVVRILGSSPVK MT+ALEQTGRKARLIGQG+ +DFLVSAAV+EFKGPDIFGVVR AQV+MELARIEA+F+GLS G H W INE+GDLT G
Sbjct:   30 SQSLNFSFLSRSSPRL-----LGLSRSFVSSPMAT---ALTSDRNLH-QEDRAMPQLLTEFMVDMTCEGCVNAVKNKLETIEGIEKVEVDLSNQVVRILGSSPVKAMTQALEQTGRKARLIGQGVPQDFLVSAAVAEFKGPDIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNG 204

[Close]

BLAST of CV091033 vs. TrEMBL
Match: Q9LD47|Q9LD47_ARATH (Cu/Zn superoxide dismutase copper chaperone like protein OS=Arabidopsis thaliana GN=At1g12520 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.523e-56
Identity = 120/184 (65.22%), Postives = 144/184 (78.26%), Query Frame = 2

Query:  182 SKNLTFPSLSITKSTLTPLLRLGLAKSSSRPPSALHMEAPSSDHKLSFQNNAVLPELLTEYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTKG 733
            S++L F  LS +   L     LGL++S    P A    A +SD  L  Q +  +P+LLTE+MVDM C+GCVNAVKNKL T++G++ V+VDLSNQVVRILGSSPVK MT+ALEQTGRKARLIGQG+ +DFLVSAAV+EFKGPDIFGVVR AQV+MELARIEA+F+GLS G H W INE+GDLT G
Sbjct:   40 SQSLNFSFLSRSSPRL-----LGLSRSFVSSPMAT---ALTSDRNLH-QEDRAMPQLLTEFMVDMTCEGCVNAVKNKLETIEGIEKVEVDLSNQVVRILGSSPVKAMTQALEQTGRKARLIGQGVPQDFLVSAAVAEFKGPDIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNG 214

[Close]

BLAST of CV091033 vs. TrEMBL
Match: Q4ZJI8|Q4ZJI8_ARATH (Copper/zinc superoxide dismutase chaperone (Fragment) OS=Arabidopsis thaliana GN=At1g12520 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.523e-56
Identity = 120/184 (65.22%), Postives = 144/184 (78.26%), Query Frame = 2

Query:  182 SKNLTFPSLSITKSTLTPLLRLGLAKSSSRPPSALHMEAPSSDHKLSFQNNAVLPELLTEYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTKG 733
            S++L F  LS +   L     LGL++S    P A    A +SD  L  Q +  +P+LLTE+MVDM C+GCVNAVKNKL T++G++ V+VDLSNQVVRILGSSPVK MT+ALEQTGRKARLIGQG+ +DFLVSAAV+EFKGPDIFGVVR AQV+MELARIEA+F+GLS G H W INE+GDLT G
Sbjct:   40 SQSLNFSFLSRSSPRL-----LGLSRSFVSSPMAT---ALTSDRNLH-QEDRAMPQLLTEFMVDMTCEGCVNAVKNKLETIEGIEKVEVDLSNQVVRILGSSPVKAMTQALEQTGRKARLIGQGVPQDFLVSAAVAEFKGPDIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNG 214

[Close]

BLAST of CV091033 vs. Vitis vinifera peptide
Match: GSVIVT01019902001 (assembled CDS)

HSP 1 Score: 249.595 bits (636), Expect = 9.034e-67
Identity = 124/148 (83.78%), Postives = 136/148 (91.89%), Query Frame = 2

Query:  290 MEAPSSDHKLSFQNNAVLPELLTEYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTKG 733
            M+A S++H  S QN+ VLPELLTE+MVDMKC+GCVNAVKNKL T+ GVKNV+VDLSNQVVR+LGSSPVKTM +ALEQTGR ARLIGQGI EDFLVSAAV+EFKGPDIFGVVRLAQVNMELARIEA FSGLS GKHGWSINEFGDLT+G
Sbjct:    1 MDASSTNHTSSSQNDVVLPELLTEFMVDMKCEGCVNAVKNKLQTISGVKNVEVDLSNQVVRVLGSSPVKTMADALEQTGRNARLIGQGIPEDFLVSAAVAEFKGPDIFGVVRLAQVNMELARIEASFSGLSSGKHGWSINEFGDLTRG 148

[Close]

BLAST of CV091033 vs. Vitis vinifera peptide
Match: GSVIVT01021208001 (assembled CDS)

HSP 1 Score: 50.8322 bits (120), Expect = 6.159e-7
Identity = 22/58 (37.93%), Postives = 38/58 (65.52%), Query Frame = 2

Query:  368 VDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARL 541
            V M C GC + ++  L  +DG+ ++DVD++ Q V ++G +  K + +A+ +TGRKA L
Sbjct:    3 VHMDCAGCESKIRKALQKLDGIDDIDVDMAMQKVTVMGWADQKKVLKAVRKTGRKAEL 60

[Close]

BLAST of CV091033 vs. TAIR peptide
Match: AT1G12520.1 (| Symbols: ATCCS, CCS | copper chaperone for SOD1 | chr1:4267277-4268900 REVERSE LENGTH=320)

HSP 1 Score: 223.402 bits (568), Expect = 1.004e-58
Identity = 120/184 (65.22%), Postives = 144/184 (78.26%), Query Frame = 2

Query:  182 SKNLTFPSLSITKSTLTPLLRLGLAKSSSRPPSALHMEAPSSDHKLSFQNNAVLPELLTEYMVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTKG 733
            S++L F  LS +   L     LGL++S    P A    A +SD  L  Q +  +P+LLTE+MVDM C+GCVNAVKNKL T++G++ V+VDLSNQVVRILGSSPVK MT+ALEQTGRKARLIGQG+ +DFLVSAAV+EFKGPDIFGVVR AQV+MELARIEA+F+GLS G H W INE+GDLT G
Sbjct:   40 SQSLNFSFLSRSSPRL-----LGLSRSFVSSPMAT---ALTSDRNLH-QEDRAMPQLLTEFMVDMTCEGCVNAVKNKLETIEGIEKVEVDLSNQVVRILGSSPVKAMTQALEQTGRKARLIGQGVPQDFLVSAAVAEFKGPDIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNG 214

[Close]

BLAST of CV091033 vs. TAIR peptide
Match: AT1G12520.2 (| Symbols: ATCCS, CCS | copper chaperone for SOD1 | chr1:4267277-4268438 REVERSE LENGTH=229)

HSP 1 Score: 202.216 bits (513), Expect = 2.394e-52
Identity = 98/123 (79.67%), Postives = 112/123 (91.06%), Query Frame = 2

Query:  365 MVDMKCDGCVNAVKNKLVTVDGVKNVDVDLSNQVVRILGSSPVKTMTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTKG 733
            MVDM C+GCVNAVKNKL T++G++ V+VDLSNQVVRILGSSPVK MT+ALEQTGRKARLIGQG+ +DFLVSAAV+EFKGPDIFGVVR AQV+MELARIEA+F+GLS G H W INE+GDLT G
Sbjct:    1 MVDMTCEGCVNAVKNKLETIEGIEKVEVDLSNQVVRILGSSPVKAMTQALEQTGRKARLIGQGVPQDFLVSAAVAEFKGPDIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNG 123

[Close]

BLAST of CV091033 vs. TAIR peptide
Match: AT1G12520.3 (| Symbols: ATCCS, CCS | copper chaperone for SOD1 | chr1:4267277-4268206 REVERSE LENGTH=184)

HSP 1 Score: 130.183 bits (326), Expect = 1.156e-30
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 2

Query:  500 MTEALEQTGRKARLIGQGILEDFLVSAAVSEFKGPDIFGVVRLAQVNMELARIEADFSGLSRGKHGWSINEFGDLTKG 733
            MT+ALEQTGRKARLIGQG+ +DFLVSAAV+EFKGPDIFGVVR AQV+MELARIEA+F+GLS G H W INE+GDLT G
Sbjct:    1 MTQALEQTGRKARLIGQGVPQDFLVSAAVAEFKGPDIFGVVRFAQVSMELARIEANFTGLSPGTHSWCINEYGDLTNG 78

The following BLAST results are available for this feature:

BLAST of CV091033 vs. DB:swissprot:display
BLAST of CV091033 vs. Populus trichocarpa peptide v2.0
BLAST of CV091033 vs. P. persica 1.0 peptide
BLAST of CV091033 vs. TrEMBL
BLAST of CV091033 vs. Vitis vinifera peptide
BLAST of CV091033 vs. TAIR peptide

BLAST of CV091033 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 8


Match Name	E-value	Identity	Description
CCS_MOUSE	7.796e-18	42.40	Copper chaperone for superoxide dismutase OS=Mus m...	[more]
CCS_RAT	3.869e-17	40.80	Copper chaperone for superoxide dismutase OS=Rattu...	[more]
CCS_PIG	7.297e-16	37.50	Copper chaperone for superoxide dismutase OS=Sus s...	[more]
CCS_HUMAN	3.621e-15	39.52	Copper chaperone for superoxide dismutase OS=Homo ...	[more]
CCS1_DEBHA	5.065e-9	28.91	Superoxide dismutase 1 copper chaperone OS=Debaryo...	[more]
CCS1_ASHGO	8.639e-9	32.54	Superoxide dismutase 1 copper chaperone OS=Ashbya ...	[more]
CCS1_KLULA	3.283e-8	27.34	Superoxide dismutase 1 copper chaperone OS=Kluyver...	[more]
CCS1_YEAST	1.248e-7	27.82	Superoxide dismutase 1 copper chaperone OS=Sacchar...	[more]

BLAST of CV091033 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
POPTR_0001s08330.1	1.697e-70	72.97		[more]
POPTR_0003s11830.1	3.538e-68	72.68		[more]

BLAST of CV091033 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
ppa008639m	1.579e-70	76.09		[more]

BLAST of CV091033 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
Q6XZF8\|Q6XZF8_SOLTU	6.370e-71	74.73	Copper chaperone OS=Solanum tuberosum GN=CCS PE=4 ...	[more]
Q9BBU5\|Q9BBU5_SOYBN	1.087e-70	77.17	Cu/Zn-superoxide dismutase copper chaperone OS=Gly...	[more]
Q9ZSC1\|Q9ZSC1_SOLLC	3.495e-69	75.41	Putative copper/zinc superoxide dismutase copper c...	[more]
B9RBX1\|B9RBX1_RICCO	3.495e-69	75.96	Superoxide dismutase copper chaperone, putative OS...	[more]
B9GW33\|B9GW33_POPTR	4.724e-66	72.68	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7TWB1\|D7TWB1_VITVI	1.985e-64	83.78	Whole genome shotgun sequence of line PN40024, sca...	[more]
D7KND5\|D7KND5_ARALY	8.077e-58	65.76	Cu/Zn-superoxide dismutase copper chaperone OS=Ara...	[more]
Q9SPD6\|Q9SPD6_ARATH	1.523e-56	65.22	Cu/Zn-superoxide dismutase copper chaperone (Fragm...	[more]
Q9LD47\|Q9LD47_ARATH	1.523e-56	65.22	Cu/Zn superoxide dismutase copper chaperone like p...	[more]
Q4ZJI8\|Q4ZJI8_ARATH	1.523e-56	65.22	Copper/zinc superoxide dismutase chaperone (Fragme...	[more]

BLAST of CV091033 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 2


Match Name	E-value	Identity	Description
GSVIVT01019902001	9.034e-67	83.78	assembled CDS	[more]
GSVIVT01021208001	6.159e-7	37.93	assembled CDS	[more]

BLAST of CV091033 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT1G12520.1	1.004e-58	65.22	\| Symbols: ATCCS, CCS \| copper chaperone for SOD1 ...	[more]
AT1G12520.2	2.394e-52	79.67	\| Symbols: ATCCS, CCS \| copper chaperone for SOD1 ...	[more]
AT1G12520.3	1.156e-30	80.77	\| Symbols: ATCCS, CCS \| copper chaperone for SOD1 ...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 12..16 score: NAcoord: 29..35 score
None	No IPR available	GENE3D	3.30.70.100	no description	coord: 96..159 score: 1.4
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 101..158 score: 4.2
None	No IPR available	PANTHER	PTHR22814:SF15	COPPER TRANSPORT PROTEIN ATOX1 (METAL TRANSPORT PROTEIN ATX1)	coord: 101..158 score: 4.2
None	No IPR available	SEG	seg	seg	coord: 7..35 score
None	No IPR available	SEG	seg	seg	coord: 1..15 score
None	No IPR available	SEG	seg	seg	coord: 46..72 score: NAcoord: 92..103 score
None	No IPR available	SEG	seg	seg	coord: 15..21 score: NAcoord: 23..41 score
IPR001424	Superoxide dismutase, copper/zinc binding	GENE3D	2.60.40.200	no description	coord: 166..221 score: 4.5
IPR001424	Superoxide dismutase, copper/zinc binding	PFAM	PF00080	Sod_Cu	coord: 172..219 score: 3.4
IPR001424	Superoxide dismutase, copper/zinc binding	SUPERFAMILY	49329	Cu,Zn superoxide dismutase-like	coord: 154..221 score: 3.1
IPR006121	Heavy metal transport/detoxification protein	PFAM	PF00403	HMA	coord: 98..153 score: 7.5
IPR006121	Heavy metal transport/detoxification protein	PROFILE	PS50846	HMA_2	coord: 94..157 score: 12
IPR006121	Heavy metal transport/detoxification protein	SUPERFAMILY	55008	HMA, heavy metal-associated domain	coord: 89..160 score: 1.4

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV091033 ID=CV091033; Name=CV091033; organism=Vaccinium corymbosum; type=EST; length=733bp
GCAGAGAGAGAGAGAGAGAGAGAGACAAGTACTCAACTGTTGGTTGATTG
GTAATATTAAATATAACTGAAATATGGGATTTCTGAGGTCAGTGGCAAGC
ACCACCACCACCACGACGGCAATCGCAGCAGCCACCGCTGTCTTCGCTCT
TTCTTCTTCTTCTTCTTCTTCCTCGTGCTTCTCCAAAAACCTAACTTTTC
CTTCTCTCTCGATTACCAAGTCTACCCTCACACCACTTCTTCGATTGGGC
CTCGCGAAGAGCTCTTCCCGTCCTCCTTCGGCTCTACACATGGAAGCCCC
CTCCTCGGATCATAAACTCTCCTTTCAGAACAATGCCGTGTTGCCGGAAT
TATTGACAGAGTATATGGTGGACATGAAGTGTGACGGGTGCGTAAACGCG
GTCAAGAACAAGTTAGTGACTGTTGATGGTGTTAAGAATGTTGATGTGGA
TTTGAGCAATCAAGTGGTCAGAATTCTCGGGTCTTCACCTGTGAAGACCA
TGACTGAAGCTTTGGAGCAGACGGGTAGAAAAGCTCGTCTAATCGGCCAA
GGGATTCTTGAAGATTTCTTAGTTTCTGCTGCGGTTTCTGAGTTCAAGGG
TCCAGATATTTTTGGTGTGGTTCGGTTGGCTCAAGTCAATATGGAACTGG
CTAGGATTGAGGCCGACTTCAGTGGGTTGTCACGAGGAAAACATGGTTGG
TCAATAAATGAATTTGGTGATCTGACCAAGGGG

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Biological Process**
Term	Definition
GO:0006801	superoxide metabolic process
GO:0055114	obsolete oxidation-reduction process
GO:0030001	metal ion transport

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
noIPR	unintegrated
IPR001424	SOD_Cu_Zn_dom
IPR006121	HMA_dom