CV091143

EST Overview
NameCV091143
Unique NameCV091143
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length472
Libraries
Library NameType
LIBEST_014531 cDNA non acclimated Bluecrop librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Homology
BLAST of CV091143 vs. DB:swissprot:display
Match: GRP9_DAUCA (Glycine-rich protein DC9.1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 3.706e-8
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 3
Query:   24 MGSKAIIFLGLFLATVLLTSSVVTARDLAETSTSTEQSRGIDDAKSEDQGRGGYNS---WHDGRGGYNS 221
            MGSK  + LGL +A  +L SS V AR+LAET+  TE   G ++      G GGYN+   +H+G GGYN+
Sbjct:    1 MGSKIFLLLGLSIAFAILISSEVAARELAETAAKTE---GYNNGGGYHNGGGGYNNGGGYHNGGGGYNN 66          
BLAST of CV091143 vs. DB:swissprot:display
Match: GRP1_CHERU (Glycine-rich protein HC1 OS=Chenopodium rubrum PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 3.706e-8
Identity = 32/69 (46.38%), Postives = 43/69 (62.32%), Query Frame = 3
Query:   24 MGSKAIIFLGLFLATVLLTSSVVTARDLAETSTSTEQSRGIDDAKSEDQGRGGYNS---WHDGRGGYNS 221
            MGSK  + LGL +A  +L SS V AR+LAET+  TE   G ++      G GGYN+   +H+G GGYN+
Sbjct:    1 MGSKIFLLLGLSIAFAILISSEVAARELAETAAKTE---GYNNGGGYHNGGGGYNNGGGYHNGGGGYNN 66          
BLAST of CV091143 vs. TrEMBL
Match: B3SW92|B3SW92_9LAMI (Glycine-rich protein 1 OS=Boea hygrometrica PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.076e-10
Identity = 34/67 (50.75%), Postives = 47/67 (70.15%), Query Frame = 3
Query:   24 MGSKAIIFLGLFLATVLLTSSVVTARDLAETSTSTEQSRGIDDAKSEDQGRGGYNSWHDGRGGYNSW 224
            MG KAI+FLGLF+A VLL SS V AR+LAET+ + +  +   + ++ + GRGGYN +  GRGGY  +
Sbjct:    1 MGYKAIVFLGLFVAIVLLISSEVGARELAETTDAIDAEK---ETEATEDGRGGYNGYGGGRGGYGGY 64          
BLAST of CV091143 vs. TrEMBL
Match: A0P8W6|A0P8W6_CUCSA (Cell wall glycine-rich protein OS=Cucumis sativus GN=CsGRP1 PE=4 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 2.023e-9
Identity = 42/82 (51.22%), Postives = 50/82 (60.98%), Query Frame = 3
Query:   24 MGSKAIIFLGLFLATVLLTSSVVTARDLAETSTSTE-----QSRGIDDAKSEDQGRGGYN----SWHD-----GRGGYNSWH 227
            M SKA +FLGL LA VLL SS V ARDLAETS+ T+     ++ G++DAK    GRGGY+      HD     GRGGY   H
Sbjct:    1 MSSKAFVFLGLLLAFVLLLSSEVAARDLAETSSKTDNEATVETNGVEDAK---YGRGGYDRGYGGGHDRGYGGGRGGYGRGH 79          
BLAST of CV091143 vs. TrEMBL
Match: Q9MBF4|Q9MBF4_CITUN (Glycine-rich protein OS=Citrus unshiu PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.473e-7
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 3
Query:   24 MGSKAIIFLGLFLATVLLTSSVVTARDLAETSTS-TEQSRGIDDAKSEDQGRGGYNSWHDGRGGYN 218
            MGSK  + LGL +A  LL SS V ARDLAETS    E++    +    + GRGGYN    GRGGYN
Sbjct:    1 MGSKLFLLLGLLMAIALLISSEVAARDLAETSIDHNEKADKATETHEIEDGRGGYN--RGGRGGYN 64          
BLAST of CV091143 vs. Vitis vinifera peptide
Match: GSVIVT01030407001 (assembled CDS)

HSP 1 Score: 56.225 bits (134), Expect = 6.731e-9
Identity = 36/70 (51.43%), Postives = 42/70 (60.00%), Query Frame = 3
Query:   24 MGSKAIIFLGLFLATVLLTSSVVTARDLAETSTSTE------QSRGIDDAKSEDQGRGGYNSWHDGRGGY 215
            MGSKA +FL L  A +LL SS V ARDLAETST  +      ++ G+DDAK    G GGY     G GGY
Sbjct:    1 MGSKAFVFLALLWAVLLLISSEVAARDLAETSTEQKKTEVAAKTNGVDDAKY--PGYGGYPG--GGNGGY 66          
The following BLAST results are available for this feature:
BLAST of CV091143 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
GRP9_DAUCA3.706e-846.38Glycine-rich protein DC9.1 OS=Daucus carota PE=2 S... [more]
GRP1_CHERU3.706e-846.38Glycine-rich protein HC1 OS=Chenopodium rubrum PE=... [more]
back to top
BLAST of CV091143 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
B3SW92|B3SW92_9LAMI4.076e-1050.75Glycine-rich protein 1 OS=Boea hygrometrica PE=2 S... [more]
A0P8W6|A0P8W6_CUCSA2.023e-951.22Cell wall glycine-rich protein OS=Cucumis sativus ... [more]
Q9MBF4|Q9MBF4_CITUN2.473e-751.52Glycine-rich protein OS=Citrus unshiu PE=4 SV=1[more]
back to top
BLAST of CV091143 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010304070016.731e-951.43assembled CDS[more]
back to top
InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 9..36
score: NAcoord: 44..56
score
NoneNo IPR availableSEGsegsegcoord: 36..47
score
NoneNo IPR availableSEGsegsegcoord: 77..93
score
NoneNo IPR availableSEGsegsegcoord: 23..50
score
IPR010800Glycine rich proteinPFAMPF07172GRPcoord: 8..92
score: 3.4

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CV091143 ID=CV091143; Name=CV091143; organism=Vaccinium corymbosum; type=EST; length=472bp
GATCCAATCAACTGAAGAGAGAAATGGGTTCCAAAGCAATTATTTTCCTT
GGCCTTTTTCTGGCCACTGTTCTTCTCACTTCTTCAGTGGTGACAGCCAG
GGATTTGGCTGAAACTTCTACTTCTACTGAACAGTCTCGTGGGATAGATG
ATGCCAAGTCGGAAGATCAGGGACGTGGCGGATACAACAGCTGGCACGAC
GGACGTGGCGGATACAACAGCTGGCACGACGGGCGTGGCGGATACAACCG
CGGACATGGTGGCGTTTATGGAGGAGGGAATTAAGGTTATTGGCGTCATT
TTGGGTATCCTTATACCATGTTAAAATATGAATGAATAATAAAGGATATC
TAAAGATGGTCTTCGGGTTGATAGTCATATAGTAGTCATCTGTGAGGGCA
TGGTCTGTATGTCTTCAGTTTTCAGTTTGTGTTAGGGCATGGTCCGTACT
ACTATACGTGATATGTTTTAAT
back to top
Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated
IPR010800GRP