CV190183
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CV190183 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0003s17120.1 () HSP 1 Score: 70.8626 bits (172), Expect = 6.531e-13 Identity = 39/98 (39.80%), Postives = 60/98 (61.22%), Query Frame = 2 Query: 71 ESMLSFNLDAAQEHRALSLLSTDSWA---PANIPLDQQSIHVNLANTTQPLMHGVPQGLPLASPEYWQSQRPTDSRLMHTFSA--NENTHFQEFQLFK 349 E+ F+ + HRALSLLSTDSW P +I +Q +H N + Q ++H VPQ PLAS EYW++++ ++ +HT S+ + + + QEFQL + Sbjct: 376 EATPEFHRATPEFHRALSLLSTDSWGSCEPQSISFEQP-MHANHTSMPQSVLHTVPQSSPLASSEYWRTEQQSNDPQVHTLSSRTDGSNYLQEFQLLR 472
BLAST of CV190183 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0018s14680.3 () HSP 1 Score: 66.2402 bits (160), Expect = 1.609e-11 Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 2 Query: 44 PEVFTQGSKESMLSFNLDAAQE-HRALSLLSTDSWAP---ANIPLDQQSIHVNLANTTQPLMHGVPQGLPLASPEYWQSQRPTDSRLMHTFSA--NENTHFQEFQLFKAPY 358 P+VF+QG + S L+ N++ A + RALSLLST SW + LDQ + N + TQP+++ Q P+AS E + ++ + +H+ N N QEFQL KAPY Sbjct: 352 PQVFSQGFEGSALTSNIEVAPDLRRALSLLSTTSWGSNEHGSTSLDQLML-ANQTSMTQPMINAELQNCPVASSENARMEQASLESRVHSLDLHDNGNVQLQEFQLLKAPY 461
BLAST of CV190183 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0018s14680.2 () HSP 1 Score: 66.2402 bits (160), Expect = 1.609e-11 Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 2 Query: 44 PEVFTQGSKESMLSFNLDAAQE-HRALSLLSTDSWAP---ANIPLDQQSIHVNLANTTQPLMHGVPQGLPLASPEYWQSQRPTDSRLMHTFSA--NENTHFQEFQLFKAPY 358 P+VF+QG + S L+ N++ A + RALSLLST SW + LDQ + N + TQP+++ Q P+AS E + ++ + +H+ N N QEFQL KAPY Sbjct: 352 PQVFSQGFEGSALTSNIEVAPDLRRALSLLSTTSWGSNEHGSTSLDQLML-ANQTSMTQPMINAELQNCPVASSENARMEQASLESRVHSLDLHDNGNVQLQEFQLLKAPY 461
BLAST of CV190183 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0018s14680.1 () HSP 1 Score: 66.2402 bits (160), Expect = 1.609e-11 Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 2 Query: 44 PEVFTQGSKESMLSFNLDAAQE-HRALSLLSTDSWAP---ANIPLDQQSIHVNLANTTQPLMHGVPQGLPLASPEYWQSQRPTDSRLMHTFSA--NENTHFQEFQLFKAPY 358 P+VF+QG + S L+ N++ A + RALSLLST SW + LDQ + N + TQP+++ Q P+AS E + ++ + +H+ N N QEFQL KAPY Sbjct: 352 PQVFSQGFEGSALTSNIEVAPDLRRALSLLSTTSWGSNEHGSTSLDQLML-ANQTSMTQPMINAELQNCPVASSENARMEQASLESRVHSLDLHDNGNVQLQEFQLLKAPY 461
BLAST of CV190183 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0001s13890.1 () HSP 1 Score: 63.5438 bits (153), Expect = 1.043e-10 Identity = 35/90 (38.89%), Postives = 58/90 (64.44%), Query Frame = 2 Query: 56 TQGSKESMLSFNLDAAQE-HRALSLLSTDSWA---PANIPLDQQSIHVNLANTTQPLMHGVPQGLPLASPEYWQSQRPTDSRLMHTFSAN 313 ++G +E ++ +AA E HRALSLLS +SW P +I +Q +H N +TTQ ++ +PQ PLAS EYW++++P+ +HT +++ Sbjct: 349 SKGLEEYIIPSKAEAAPESHRALSLLSNNSWGSREPQSISFEQP-VHTN--HTTQSVLQVIPQNSPLASSEYWRTEQPSTDSQVHTLTSH 435
BLAST of CV190183 vs. P. persica 1.0 peptide
Match: ppa005013m () HSP 1 Score: 81.2629 bits (199), Expect = 3.471e-16 Identity = 50/120 (41.67%), Postives = 66/120 (55.00%), Query Frame = 2 Query: 26 PSKHDKPEVFTQGSKESMLSFNLDAAQE-HRALSLLSTDSWAPAN---IPLDQQSIHVNLANTTQPLMHGVPQGLPLASPEYWQSQ----RPTDSRLMHTFSANENTHFQEFQLFKAPYE 361 PSK EV +G++ESM+SFNL A Q+ HRALSLLST SW + LD + N QP M + QGLP++S YWQ+Q ++ + H+ S N Q+ FK PYE Sbjct: 354 PSKGTAAEVLNRGAEESMISFNLGATQDFHRALSLLSTSSWVSGEAKPVALDNNTNQNYQNNIPQPGMQAMTQGLPVSS-GYWQTQHLSLNTQEAHVSHSHSNGSNHFHQDLHQFKGPYE 472
BLAST of CV190183 vs. TrEMBL
Match: D7TAZ1|D7TAZ1_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_10.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00010496001 PE=4 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 4.115e-17 Identity = 57/117 (48.72%), Postives = 75/117 (64.10%), Query Frame = 2 Query: 29 SKHDKPEVFTQGSKESMLSFNLDAAQE-HRALSLLSTDSWAPAN---IPLDQQSIHVNLANTTQPLMHGVPQGLPLASPEYWQSQRP-TDSRLMHTFSANE-NTHFQEFQLFKAPYE 361 SK EV QG +SM+S NLD +Q+ RALSLLST+SW IP D +HVN + Q +MH V QG+ ++ E+W+++ P TDSR+ S + NTHFQEF+LFKAPYE Sbjct: 294 SKGAIAEVLNQGLGDSMISSNLDTSQDLRRALSLLSTNSWGSCETQPIPSDHP-MHVNQTSMPQSIMHAVSQGMLHSTSEHWRTELPSTDSRVHILPSQGDGNTHFQEFKLFKAPYE 409
BLAST of CV190183 vs. TrEMBL
Match: B9RMD6|B9RMD6_RICCO (LIGULELESS1 protein, putative OS=Ricinus communis GN=RCOM_1079880 PE=4 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 1.564e-16 Identity = 50/121 (41.32%), Postives = 76/121 (62.81%), Query Frame = 2 Query: 20 VFPSKHDKP--EVFTQGSKESMLSFNLDAAQE-HRALSLLSTDSWAPANIPLDQQSIHVNLANTTQP--LMHGVPQGLPLASPEYWQSQRPTDSRLMHTFSA--NENTHFQEFQLFKAPYE 361 + PSK P EV Q +ES++S N+DA Q+ HRALSLLST+SW L++T P ++H VPQGLPL S +YW++++ + +HT ++ + +++FQEFQL +APY+ Sbjct: 354 LLPSKAKVPIAEVLNQDLEESIISSNVDATQDLHRALSLLSTNSWGSCEPKSFSHERPAQLSHTGMPQSVLHAVPQGLPLTSSDYWRAEQHITNSRVHTLTSQNDSSSYFQEFQLLRAPYD 474
BLAST of CV190183 vs. TrEMBL
Match: A5AK13|A5AK13_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026287 PE=4 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 1.200e-8 Identity = 43/102 (42.16%), Postives = 54/102 (52.94%), Query Frame = 2 Query: 74 SMLSFNLDAAQE-HRALSLLSTDSWA---PANIPLDQQSIHVNLANTTQPLMHGVPQGLPLASPEYWQSQRPTDSRLMHTFSANEN--THFQEFQLFKAPYE 361 S ++ N + A + RALSLLST+SW P LDQ +HVN + QP H P LAS E Q+ H+ + N + FQEFQLFKAPYE Sbjct: 938 SAIASNSNVAPDFRRALSLLSTNSWGLNDPGPTSLDQL-MHVNQXSMAQPTXHAEPHNWALASSENMHVQQTPSETRGHSLDLHNNGSSMFQEFQLFKAPYE 1038
BLAST of CV190183 vs. TrEMBL
Match: B9GMK3|B9GMK3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_640027 PE=4 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 2.047e-8 Identity = 35/88 (39.77%), Postives = 56/88 (63.64%), Query Frame = 2 Query: 62 GSKESMLSFNLDAAQE-HRALSLLSTDSWA---PANIPLDQQSIHVNLANTTQPLMHGVPQGLPLASPEYWQSQRPTDSRLMHTFSAN 313 G +E ++ +AA E HRALSLLS +SW P +I +Q +H N +TTQ ++ +PQ PLAS EYW++++P+ +HT +++ Sbjct: 12 GLEEYIIPSKAEAAPESHRALSLLSNNSWGSREPQSISFEQP-VHTN--HTTQSVLQVIPQNSPLASSEYWRTEQPSTDSQVHTLTSH 96
BLAST of CV190183 vs. Vitis vinifera peptide
Match: GSVIVT01010496001 (assembled CDS) HSP 1 Score: 91.6633 bits (226), Expect = 2.200e-19 Identity = 57/117 (48.72%), Postives = 75/117 (64.10%), Query Frame = 2 Query: 29 SKHDKPEVFTQGSKESMLSFNLDAAQE-HRALSLLSTDSWAPAN---IPLDQQSIHVNLANTTQPLMHGVPQGLPLASPEYWQSQRP-TDSRLMHTFSANE-NTHFQEFQLFKAPYE 361 SK EV QG +SM+S NLD +Q+ RALSLLST+SW IP D +HVN + Q +MH V QG+ ++ E+W+++ P TDSR+ S + NTHFQEF+LFKAPYE Sbjct: 294 SKGAIAEVLNQGLGDSMISSNLDTSQDLRRALSLLSTNSWGSCETQPIPSDHP-MHVNQTSMPQSIMHAVSQGMLHSTSEHWRTELPSTDSRVHILPSQGDGNTHFQEFKLFKAPYE 409 The following BLAST results are available for this feature:
BLAST of CV190183 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide) Total hits: 5
BLAST of CV190183 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide) Total hits: 1
BLAST of CV190183 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL) Total hits: 4
BLAST of CV190183 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide) Total hits: 1
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CV190183 ID=CV190183; Name=CV190183; organism=Vaccinium corymbosum; type=EST; length=588bpback to top |