CV190095 | GDV

EST Overview


Name	CV190095
Unique Name	CV190095
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	670

Libraries


Library Name	Type
LIBEST_016374 Vco01	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Swissprot	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide	2011-02-10
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

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BLAST of CV190095 vs. DB:swissprot:display
Match: SMC6_DICDI (Structural maintenance of chromosomes protein 6 OS=Dictyostelium discoideum GN=smc6 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.932e-23
Identity = 63/164 (38.41%), Postives = 95/164 (57.93%), Query Frame = 1

Query:   28 LREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEETLSIEVKM----PQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFA-LTQGSQWIFITPHDISMVKQGDRIKKQQMAAP 504
            + E     ++ LN R +K++R    + R+    FN  L KKG +G +  ++    L I V++    P + +     DT+GLSGGERSFST+   LA  E  E PFRAMDEFDVFMD V+R IS++ L+  A   +  Q+IF+TP  ++ +K  + +K  ++ AP
Sbjct: 1010 IEELATILERNLNERYKKWQRFRLSISRRSDQYFNIFLSKKGYTGSLTFDHQNGKLDINVELQKALPSNQNGTAKGDTKGLSGGERSFSTVSLLLAFWENMECPFRAMDEFDVFMDEVNRSISINLLMSKAEENRSKQYIFVTPLALNHIKTSEYVKVFRVRAP 1173

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BLAST of CV190095 vs. DB:swissprot:display
Match: SMC6_HUMAN (Structural maintenance of chromosomes protein 6 OS=Homo sapiens GN=SMC6 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.862e-20
Identity = 61/173 (35.26%), Postives = 100/173 (57.80%), Query Frame = 1

Query:   10 QQTYKALREKLNSCQKALNLRLRKFE---RNASELKRQLTWK----FNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQG-SQWIFITPHDISMVKQGDRIKKQQMAAP 504
            ++TY  L  K+ + +K + L     E   +   + +R LT +    F+  L ++   G +  ++  ETLSI V+ P + +     D R LSGGERSFST+CF L+L  + E+PFR +DEFDV+MD V+R+I++D ++  A +Q   Q+I +TP  +S +     I+  +M+ P
Sbjct:  899 RETYLDLDSKVRTLKKFIKLLGEIMEHRFKTYQQFRRCLTLRCKLYFDNLLSQRAYCGKMNFDHKNETLSISVQ-PGEGNKAAFNDMRALSGGERSFSTVCFILSLWSIAESPFRCLDEFDVYMDMVNRRIAMDLILKMADSQRFRQFILLTPQSMSSLPSSKLIRILRMSDP 1070

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BLAST of CV190095 vs. DB:swissprot:display
Match: SMC6_MOUSE (Structural maintenance of chromosomes protein 6 OS=Mus musculus GN=Smc6 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.149e-20
Identity = 55/162 (33.95%), Postives = 95/162 (58.64%), Query Frame = 1

Query:   22 KALREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQG-SQWIFITPHDISMVKQGDRIKKQQMAAP 504
            + LR  +   ++ +  R + +++    L  +    F+  L ++   G +  ++  ETLSI V+ P + +  +  D R LSGGERSFST+CF L+L  + E+PFR +DEFDV+MD V+R+I++D ++  A +Q   Q+I +TP  +S +     I+  +M+ P
Sbjct:  916 RTLRRFIKLLEEIMTHRYKTYQQFRRCLTLRCKLYFDNLLSQRAYCGKMNFDHKNETLSITVQ-PGEGNKASFNDMRALSGGERSFSTVCFILSLWSIAESPFRCLDEFDVYMDMVNRRIAMDMILKMADSQRFRQFILLTPQSMSSLPSSKLIRILRMSDP 1076

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BLAST of CV190095 vs. DB:swissprot:display
Match: SMC6_XENLA (Structural maintenance of chromosomes protein 6 OS=Xenopus laevis GN=smc6 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.077e-20
Identity = 54/144 (37.50%), Postives = 91/144 (63.19%), Query Frame = 1

Query:   88 RNASELKRQLTWK----FNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQG-SQWIFITPHDISMVKQGDRIKKQQMAAP 504
            ++  + +R LT++    F+  L ++  SG +  ++  ETLSI V+ P + +   + D + LSGGERSFST+CF L+L  + E+PFR +DEFDV+MD V+R+IS+D ++  A +Q   Q+I +TP ++S +     ++  +M  P
Sbjct:  966 KSYQQFRRCLTFRCKIYFDSLLSQRAYSGKINFDHKNETLSITVQ-PGEGNKAALSDMKCLSGGERSFSTVCFILSLWSIAESPFRCLDEFDVYMDMVNRRISMDMMLSMADSQRFRQFILLTPQNMSSLPSTSLVRILRMKDP 1108

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BLAST of CV190095 vs. DB:swissprot:display
Match: SMC6_TAKRU (Structural maintenance of chromosomes protein 6 OS=Takifugu rubripes GN=smc6 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.991e-19
Identity = 60/168 (35.71%), Postives = 93/168 (55.36%), Query Frame = 1

Query:    7 KQQTYKALREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRK-ISLDTLVDFALTQG-SQWIFITPHDISMVKQGDRIKKQQMAAP 504
            K Q  K L   +    + ++ RL  +      L  +  + F+  L ++G +G +  ++  ETLSI V+ P   +  ++ D R LSGGERSFST+CF L+L  +TEAPFR +DEFDV+MD  +R+     + +  A +Q   Q IF+TP  +S + +  RI   Q+  P
Sbjct:  910 KAQQIKNLNNFIKCLDRVMDQRLYAYTVLRRFLSARCKYYFDSMLAQRGFTGNMTFDHKNETLSISVQ-PGQGNKADLNDMRCLSGGERSFSTVCFVLSLWPITEAPFRCLDEFDVYMDMANRRNTQRQSGLKMATSQKIRQLIFLTPQSMSSLPECRRIHIVQLNDP 1076

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BLAST of CV190095 vs. DB:swissprot:display
Match: SMC6_SCHPO (Structural maintenance of chromosomes protein 6 OS=Schizosaccharomyces pombe GN=smc6 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.783e-16
Identity = 54/166 (32.53%), Postives = 89/166 (53.61%), Query Frame = 1

Query:    1 RRKQQTYKALREKLNSCQKALNLRLRKFERNASELKRQLTWK----FNGHLKKKGISGLVKVNYLEETLSIEV----KMPQDASNNNVRD---TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAL-TQGSQWIFITPHDISMV 462
            + K    K L  +L    +AL   LR+     ++ ++ +T +    F  +L ++  +G + + + EE L   V    +    A N + +     +GLSGGE+SF+T+C  L++ E    P R +DEFDVFMDAV+R +S+  +VD A  +   Q+IFITP D+  +
Sbjct:  948 KEKHDQAKVLVARLTQLLQALEETLRRRNEMWTKFRKLITLRTKELFELYLSQRNFTGKLVIKHQEEFLEPRVYPANRNLATAHNRHEKSKVSVQGLSGGEKSFATICMLLSIWEAMSCPLRCLDEFDVFMDAVNRLVSIKMMVDSAKDSSDKQFIFITPQDMGQI 1113

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BLAST of CV190095 vs. DB:swissprot:display
Match: SMC6_YEAST (Structural maintenance of chromosomes protein 6 OS=Saccharomyces cerevisiae GN=SMC6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.265e-12
Identity = 51/159 (32.08%), Postives = 78/159 (49.06%), Query Frame = 1

Query:   10 QQTYKALREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLV----DFALTQGSQWIFITPHDISMVKQGD 474
            Q+ Y  + E LN    +L  R + ++             F   LK +  SG   ++++++T S+E+ +    ++   R+   LSGGE+SFS +   LA  +   +   A+DEFDVFMD V+RKI    +V    D A T   Q I ITP DI  +   D
Sbjct:  940 QKKYMEIDEALNRLHNSLKARDQNYKNAEKGTCFDADMDFRASLKVRKFSG--NLSFIKDTKSLEIYI-LTTNDEKARNVDTLSGGEKSFSQMALLLATWKPMRSRIIALDEFDVFMDQVNRKIGTTLIVKKLKDIART---QTIIITPQDIGKIADID 1092

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BLAST of CV190095 vs. DB:swissprot:display
Match: SMC5_YEAST (Structural maintenance of chromosomes protein 5 OS=Saccharomyces cerevisiae GN=SMC5 PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 4.758e-8
Identity = 39/125 (31.20%), Postives = 66/125 (52.80%), Query Frame = 1

Query:   85 ERNASELKRQLTWKFNGHLKKKGISGLVKV----NYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQG-SQWIFITP 444
            E    ++  +++ +F       G +G V++    +Y E  + I VK   +A    + D+   SGGER+ ST+ + +AL E T APFR +DE +  MD+ + +I    +V+ A  +  SQ+  ITP
Sbjct:  926 EPKLDDIVSKISARFARLFNNVGSAGAVRLEKPKDYAEWKIEIMVKFRDNAPLKKL-DSHTQSGGERAVSTVLYMIALQEFTSAPFRVVDEINQGMDSRNERIVHKAMVENACAENTSQYFLITP 1049

[Close]

BLAST of CV190095 vs. DB:swissprot:display
Match: SMC5_TAKRU (Structural maintenance of chromosomes protein 5 OS=Takifugu rubripes GN=smc5 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 8.116e-8
Identity = 47/177 (26.55%), Postives = 78/177 (44.07%), Query Frame = 1

Query:    4 RKQQTYKALREKLNSCQKALNLRLRKFERNASELKR-----------QLTWKFNGHLKKKGISGLVKVNYLEET------LSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQ-GSQWIFITPHDISMVKQGDRI 480
            R  Q  K L  +L   + AL      + +N SE K            Q+  KF    +    +G V ++  +E       + I VK   +   + +      SGGERS ST+ + ++L E+   PFR +DE +  MD ++ +   D +V  A  +  SQ+ FITP  +  +K  + +
Sbjct:  888 RSDQEIKELENELEEKKNALE----SYRQNISEAKERWLNPLKQLVEQINEKFTAFFRSMNCAGEVDLHSEKEEDYDKYGIRIRVKFHSNTQLHELTPFHQ-SGGERSVSTMLYLMSLQELNRCPFRVVDEINQGMDPINERRVFDIVVGTACKERTSQYFFITPKLLQNLKYAEEM 1059

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BLAST of CV190095 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0003s10710.1 ()

HSP 1 Score: 273.863 bits (699), Expect = 6.368e-74
Identity = 134/169 (79.29%), Postives = 153/169 (90.53%), Query Frame = 1

Query:    4 RKQQTYKALREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQGSQWIFITPHDISMVKQGDRIKKQQMAAPRT 510
            RK+QTY+A REKL +C++ALNLR  KF+RNAS+LKRQLTW FNGHL +KGISG +K++Y E+TL +EVKMPQDAS ++VRDTRGLSGGERSFSTLCFALALH+MTEA FRAMDEFDVFMDAVSRKISLDTLV FAL QGSQWIFITPHDIS VK  +RIKKQQ+AAPR+
Sbjct:   81 RKRQTYRAFREKLKTCEEALNLRWSKFQRNASDLKRQLTWNFNGHLGEKGISGSIKISYEEKTLKVEVKMPQDASCSSVRDTRGLSGGERSFSTLCFALALHQMTEASFRAMDEFDVFMDAVSRKISLDTLVKFALAQGSQWIFITPHDISGVKHHERIKKQQLAAPRS 249

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BLAST of CV190095 vs. TrEMBL
Match: D7U753|D7U753_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_13.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00013865001 PE=4 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 3.754e-77
Identity = 143/169 (84.62%), Postives = 160/169 (94.67%), Query Frame = 1

Query:    4 RKQQTYKALREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQGSQWIFITPHDISMVKQGDRIKKQQMAAPRT 510
            RKQQTY+A REKLN+C++AL+LR  KF+RNA+ LKRQLTW+FN HL+KKGISG +KV+Y E+TLS+EVKMPQDASNN VRDTRGLSGGERSFSTLCFALALHEMTE+PFRAMDEFDVFMDAVSRKISLDTLV+FAL QGSQWIFITPHDISMVKQG+RIKKQQMAAPR+
Sbjct:  859 RKQQTYEAFREKLNACKEALDLRWSKFQRNATLLKRQLTWQFNAHLRKKGISGHIKVSYEEKTLSVEVKMPQDASNNIVRDTRGLSGGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISLDTLVNFALAQGSQWIFITPHDISMVKQGERIKKQQMAAPRS 1027

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BLAST of CV190095 vs. TrEMBL
Match: B9R9U6|B9R9U6_RICCO (Structural maintenance of chromosomes 6 smc6, putative OS=Ricinus communis GN=RCOM_1500700 PE=4 SV=1)

HSP 1 Score: 284.263 bits (726), Expect = 5.993e-75
Identity = 139/169 (82.25%), Postives = 155/169 (91.72%), Query Frame = 1

Query:    4 RKQQTYKALREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQGSQWIFITPHDISMVKQGDRIKKQQMAAPRT 510
            +KQQ YK  REKL +C++AL+LR  KF+RN++ LKRQLTW FNGHL KKGISG +KV+Y E+TL +EVKMPQDAS++ VRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAL QGSQWIFITPHDISMVKQG+RIKKQQMAAPR+
Sbjct:  890 KKQQMYKGFREKLEACKRALDLRWNKFQRNSTLLKRQLTWNFNGHLGKKGISGNIKVSYEEKTLRVEVKMPQDASSSTVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALAQGSQWIFITPHDISMVKQGERIKKQQMAAPRS 1058

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BLAST of CV190095 vs. TrEMBL
Match: B9H073|B9H073_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_830778 PE=4 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 8.100e-72
Identity = 134/169 (79.29%), Postives = 153/169 (90.53%), Query Frame = 1

Query:    4 RKQQTYKALREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQGSQWIFITPHDISMVKQGDRIKKQQMAAPRT 510
            RK+QTY+A REKL +C++ALNLR  KF+RNAS+LKRQLTW FNGHL +KGISG +K++Y E+TL +EVKMPQDAS ++VRDTRGLSGGERSFSTLCFALALH+MTEA FRAMDEFDVFMDAVSRKISLDTLV FAL QGSQWIFITPHDIS VK  +RIKKQQ+AAPR+
Sbjct:  878 RKRQTYRAFREKLKTCEEALNLRWSKFQRNASDLKRQLTWNFNGHLGEKGISGSIKISYEEKTLKVEVKMPQDASCSSVRDTRGLSGGERSFSTLCFALALHQMTEASFRAMDEFDVFMDAVSRKISLDTLVKFALAQGSQWIFITPHDISGVKHHERIKKQQLAAPRS 1046

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BLAST of CV190095 vs. TrEMBL
Match: C5X880|C5X880_SORBI (Putative uncharacterized protein Sb02g019360 OS=Sorghum bicolor GN=Sb02g019360 PE=4 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.804e-71
Identity = 134/168 (79.76%), Postives = 147/168 (87.50%), Query Frame = 1

Query:    4 RKQQTYKALREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQGSQWIFITPHDISMVKQGDRIKKQQMAAPR 507
            RKQQ Y   R+KLN+CQKAL+LR +KF+RNA  LKRQLTW FN HL KKGISG + V+Y  E LS+E+ MPQDAS + +RDTRGLSGGERSFSTLCF L+LH MTEAPFRAMDEFDVFMDAVSRKISLDTLVDFA+TQGSQWIFITPHDISMVK GDRIKKQQMAAPR
Sbjct:  871 RKQQMYAGFRDKLNACQKALDLRWKKFQRNAGLLKRQLTWLFNEHLGKKGISGHINVDYKNEVLSVELTMPQDASRDTIRDTRGLSGGERSFSTLCFTLSLHGMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAVTQGSQWIFITPHDISMVKAGDRIKKQQMAAPR 1038

[Close]

BLAST of CV190095 vs. TrEMBL
Match: C0PG09|C0PG09_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.995e-70
Identity = 132/168 (78.57%), Postives = 145/168 (86.31%), Query Frame = 1

Query:    4 RKQQTYKALREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQGSQWIFITPHDISMVKQGDRIKKQQMAAPR 507
            RKQQ Y   R+KLN+CQKAL+LR +KF+RNA  LKRQLTW FN HL KKGISG + V+Y  E LS+E+ MPQDAS + +RDTRGLSGGERSFSTLCF L+LH M EAPFRAMDEFDVFMDAVSRKISLDTLVDFA+ QGSQWIFITPHDISMVK GDRIKKQQMAAPR
Sbjct:  872 RKQQMYSGFRDKLNACQKALDLRWKKFQRNAGLLKRQLTWLFNEHLGKKGISGHINVDYKNEVLSVELTMPQDASRDTIRDTRGLSGGERSFSTLCFTLSLHGMAEAPFRAMDEFDVFMDAVSRKISLDTLVDFAVAQGSQWIFITPHDISMVKAGDRIKKQQMAAPR 1039

[Close]

BLAST of CV190095 vs. TrEMBL
Match: B9G259|B9G259_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_28406 PE=4 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.403e-70
Identity = 131/167 (78.44%), Postives = 146/167 (87.43%), Query Frame = 1

Query:    7 KQQTYKALREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQGSQWIFITPHDISMVKQGDRIKKQQMAAPR 507
            KQQ Y   R+KLNSCQKAL++R +KF+RNA+ LKRQLTW FN HL KKGISG + V+Y E  LS+E+ MPQD+S + + DTRGLSGGERSFSTLCF LALH MTEAPFRAMDEFDVFMDAVSRKISLDTLVDFA+TQGSQWIFITPHDISMV+ GDRIKKQQMAAPR
Sbjct:  872 KQQLYAGFRDKLNSCQKALDMRWKKFQRNAALLKRQLTWLFNEHLGKKGISGFINVDYKERLLSVELTMPQDSSRDTITDTRGLSGGERSFSTLCFTLALHGMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAVTQGSQWIFITPHDISMVQPGDRIKKQQMAAPR 1038

[Close]

BLAST of CV190095 vs. TrEMBL
Match: B8BCZ6|B8BCZ6_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30422 PE=4 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 3.403e-70
Identity = 131/167 (78.44%), Postives = 146/167 (87.43%), Query Frame = 1

Query:    7 KQQTYKALREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQGSQWIFITPHDISMVKQGDRIKKQQMAAPR 507
            KQQ Y   R+KLNSCQKAL++R +KF+RNA+ LKRQLTW FN HL KKGISG + V+Y E  LS+E+ MPQD+S + + DTRGLSGGERSFSTLCF LALH MTEAPFRAMDEFDVFMDAVSRKISLDTLVDFA+TQGSQWIFITPHDISMV+ GDRIKKQQMAAPR
Sbjct:  872 KQQLYAGFRDKLNSCQKALDMRWKKFQRNAALLKRQLTWLFNEHLGKKGISGFINVDYKERLLSVELTMPQDSSRDTITDTRGLSGGERSFSTLCFTLALHGMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAVTQGSQWIFITPHDISMVQPGDRIKKQQMAAPR 1038

[Close]

BLAST of CV190095 vs. TrEMBL
Match: Q8GU52|Q8GU52_ORYSA (SMC6 protein OS=Oryza sativa GN=smc6 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 7.581e-70
Identity = 130/167 (77.84%), Postives = 146/167 (87.43%), Query Frame = 1

Query:    7 KQQTYKALREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQGSQWIFITPHDISMVKQGDRIKKQQMAAPR 507
            KQQ Y   R+KLNSCQKAL++R +KF+RNA+ LKRQLTW+FN HL KKGISG + V+Y E  LS+EV+  QD+S + + DTRGLSGGERSFSTLCF LALH MTEAPFRAMDEFDVFMDAVSRKISLDTLVDFA+TQGSQWIFITPHDISMV+ GDRIKKQQMAAPR
Sbjct:  873 KQQLYAGFRDKLNSCQKALDMRWKKFQRNAALLKRQLTWRFNEHLGKKGISGFINVDYKERLLSVEVRFSQDSSRDTITDTRGLSGGERSFSTLCFTLALHGMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFAVTQGSQWIFITPHDISMVQPGDRIKKQQMAAPR 1039

[Close]

BLAST of CV190095 vs. TrEMBL
Match: D7MV22|D7MV22_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_496305 PE=4 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.867e-68
Identity = 130/169 (76.92%), Postives = 151/169 (89.35%), Query Frame = 1

Query:    4 RKQQTYKALREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQGSQWIFITPHDISMVKQGDRIKKQQMAAPRT 510
            +K+++Y+  REKL +C+ AL+ R  KF+RNAS L+RQLTW+FN HL KKGISG +KV+Y  +TLSIEVKMPQDA++N VRDT+GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLD LVDFA+ QGSQW+FITPHDISMVK  +RIKKQQMAAPR+
Sbjct:  889 KKRKSYQDHREKLMACKNALDSRWGKFQRNASLLRRQLTWQFNSHLGKKGISGHIKVSYENKTLSIEVKMPQDATSNAVRDTKGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDALVDFAIGQGSQWMFITPHDISMVKSHERIKKQQMAAPRS 1057

[Close]

BLAST of CV190095 vs. TrEMBL
Match: Q9S722|Q9S722_ARATH (SMC-like protein OS=Arabidopsis thaliana GN=MIM PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 4.160e-68
Identity = 129/169 (76.33%), Postives = 151/169 (89.35%), Query Frame = 1

Query:    4 RKQQTYKALREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQGSQWIFITPHDISMVKQGDRIKKQQMAAPRT 510
            +K+++Y+  REKL +C+ AL+ R  KF+RNAS L+RQLTW+FN HL KKGISG +KV+Y  +TLSIEVKMPQDA++N VRDT+GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLD LVDFA+ +GSQW+FITPHDISMVK  +RIKKQQMAAPR+
Sbjct:  887 KKRKSYQDHREKLMACKNALDSRWAKFQRNASLLRRQLTWQFNAHLGKKGISGHIKVSYENKTLSIEVKMPQDATSNVVRDTKGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDALVDFAIGEGSQWMFITPHDISMVKSHERIKKQQMAAPRS 1055

[Close]

BLAST of CV190095 vs. Vitis vinifera peptide
Match: GSVIVT01013865001 (assembled CDS)

HSP 1 Score: 291.582 bits (745), Expect = 1.801e-79
Identity = 143/169 (84.62%), Postives = 160/169 (94.67%), Query Frame = 1

Query:    4 RKQQTYKALREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQGSQWIFITPHDISMVKQGDRIKKQQMAAPRT 510
            RKQQTY+A REKLN+C++AL+LR  KF+RNA+ LKRQLTW+FN HL+KKGISG +KV+Y E+TLS+EVKMPQDASNN VRDTRGLSGGERSFSTLCFALALHEMTE+PFRAMDEFDVFMDAVSRKISLDTLV+FAL QGSQWIFITPHDISMVKQG+RIKKQQMAAPR+
Sbjct:  859 RKQQTYEAFREKLNACKEALDLRWSKFQRNATLLKRQLTWQFNAHLRKKGISGHIKVSYEEKTLSVEVKMPQDASNNIVRDTRGLSGGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKISLDTLVNFALAQGSQWIFITPHDISMVKQGERIKKQQMAAPRS 1027

[Close]

BLAST of CV190095 vs. Vitis vinifera peptide
Match: GSVIVT01014044001 (assembled CDS)

HSP 1 Score: 129.413 bits (324), Expect = 1.184e-30
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 1

Query:  256 LSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQGSQWIFITPHDISMVKQGD 474
            LS GERSFSTLCFALALHEMTE+PFRAMDEFDVFMDAVSRKIS    VDFAL QGSQWIFITPHDISMVKQG+
Sbjct:    9 LSSGERSFSTLCFALALHEMTESPFRAMDEFDVFMDAVSRKIS---FVDFALAQGSQWIFITPHDISMVKQGE 78

[Close]

BLAST of CV190095 vs. Vitis vinifera peptide
Match: GSVIVT01014042001 (assembled CDS)

HSP 1 Score: 91.2781 bits (225), Expect = 3.573e-19
Identity = 42/62 (67.74%), Postives = 54/62 (87.10%), Query Frame = 1

Query:    4 RKQQTYKALREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEE 189
            RKQQTY+A REKLN+C++AL+LR  K +RNA+ LKRQLTW+FN HL+KKGISG +KV+Y E+
Sbjct:   99 RKQQTYEAFREKLNACKEALDLRWSKLQRNATLLKRQLTWQFNAHLRKKGISGHIKVSYEEK 160

[Close]

BLAST of CV190095 vs. Vitis vinifera peptide
Match: GSVIVT01032195001 (assembled CDS)

HSP 1 Score: 51.9878 bits (123), Expect = 2.402e-7
Identity = 41/158 (25.95%), Postives = 74/158 (46.84%), Query Frame = 1

Query:   10 QQTYKALREKLNSCQKALNLRLRKFER-------NASELKRQLTWKFNGHLKKKGISGLVK-----VNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQGS-QWIFITP 444
            QQ  +A+  KL + +K L + L + +            L  Q+   F+ + +   ++G V      +++ +  + I+VK  Q A    V      SGGERS +T+ + ++L ++T  PFR +DE +  MD ++ +     LV  A    + Q   +TP
Sbjct:  847 QQKIEAISTKLEADEKELRMYLAEIDALKENWLTTLRNLVAQINETFSRNFQDMAVAGEVSLDEHDIDFDQFGILIKVKFRQ-AGELQVLSAHHQSGGERSVATILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTP 1003

[Close]

BLAST of CV190095 vs. TAIR peptide
Match: AT5G61460.1 (| Symbols: MIM, ATRAD18, SMC6B | P-loop containing nucleoside triphosphate hydrolases superfamily protein | chr5:24714551-24721841 REVERSE LENGTH=1057)

HSP 1 Score: 261.536 bits (667), Expect = 2.879e-70
Identity = 129/169 (76.33%), Postives = 151/169 (89.35%), Query Frame = 1

Query:    4 RKQQTYKALREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQGSQWIFITPHDISMVKQGDRIKKQQMAAPRT 510
            +K+++Y+  REKL +C+ AL+ R  KF+RNAS L+RQLTW+FN HL KKGISG +KV+Y  +TLSIEVKMPQDA++N VRDT+GLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLD LVDFA+ +GSQW+FITPHDISMVK  +RIKKQQMAAPR+
Sbjct:  889 KKRKSYQDHREKLMACKNALDSRWAKFQRNASLLRRQLTWQFNAHLGKKGISGHIKVSYENKTLSIEVKMPQDATSNVVRDTKGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDALVDFAIGEGSQWMFITPHDISMVKSHERIKKQQMAAPRS 1057

[Close]

BLAST of CV190095 vs. TAIR peptide
Match: AT5G07660.1 (| Symbols: SMC6A | structural maintenance of chromosomes 6A | chr5:2422839-2429912 FORWARD LENGTH=1058)

HSP 1 Score: 253.447 bits (646), Expect = 7.840e-68
Identity = 124/169 (73.37%), Postives = 146/169 (86.39%), Query Frame = 1

Query:    4 RKQQTYKALREKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLEETLSIEVKMPQDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQGSQWIFITPHDISMVKQGDRIKKQQMAAPRT 510
            +K++TYK+ REKL  C+ A++ R  K +RN   LKR+LTW+FN HL KKGISG ++V+Y ++TLSIEVKMPQDA+N+ VRDTRGLSGGERSFSTLCF LAL  MTEAP RAMDEFDVFMDAVSRKISLDTL+DFAL QGSQW+FITPHDISMVK  ++IKKQQMAAPR+
Sbjct:  890 KKRKTYKSCREKLKVCKDAVDSRWNKLQRNKDLLKRELTWQFNHHLGKKGISGNIRVSYEDKTLSIEVKMPQDATNSAVRDTRGLSGGERSFSTLCFTLALQNMTEAPIRAMDEFDVFMDAVSRKISLDTLIDFALKQGSQWMFITPHDISMVKSHEKIKKQQMAAPRS 1058

[Close]

BLAST of CV190095 vs. TAIR peptide
Match: AT5G15920.1 (| Symbols: SMC5 | structural maintenance of chromosomes 5 | chr5:5196210-5199559 FORWARD LENGTH=1053)

HSP 1 Score: 52.7582 bits (125), Expect = 2.031e-7
Identity = 35/143 (24.48%), Postives = 71/143 (49.65%), Query Frame = 1

Query:   31 REKLNSCQKALNLRLRKFERNASELKRQLTWKFNGHLKKKGISGLVKVNYLE---ETLSIEVKMP-QDASNNNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALTQGS-QWIFITP 444
            +  L+ C K ++    K+     +L  Q+   F+ + ++  ++G V ++  +   +   I +K+  +++    V  +   SGGERS ST+ + ++L ++T  PFR +DE +  MD ++ +     LV  A    + Q   +TP
Sbjct:  861 KRDLSICMKEIDSLKEKWLPTLRQLVGQINETFSHNFQEMAVAGEVSLDERDTDFDQYGIHIKVKFRESGQLQVLSSHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTP 1003

The following BLAST results are available for this feature:

BLAST of CV190095 vs. DB:swissprot:display
BLAST of CV190095 vs. Populus trichocarpa peptide v2.0
BLAST of CV190095 vs. TrEMBL
BLAST of CV190095 vs. Vitis vinifera peptide
BLAST of CV190095 vs. TAIR peptide

BLAST of CV190095 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 9


Match Name	E-value	Identity	Description
SMC6_DICDI	8.932e-23	38.41	Structural maintenance of chromosomes protein 6 OS...	[more]
SMC6_HUMAN	1.862e-20	35.26	Structural maintenance of chromosomes protein 6 OS...	[more]
SMC6_MOUSE	4.149e-20	33.95	Structural maintenance of chromosomes protein 6 OS...	[more]
SMC6_XENLA	7.077e-20	37.50	Structural maintenance of chromosomes protein 6 OS...	[more]
SMC6_TAKRU	5.991e-19	35.71	Structural maintenance of chromosomes protein 6 OS...	[more]
SMC6_SCHPO	2.783e-16	32.53	Structural maintenance of chromosomes protein 6 OS...	[more]
SMC6_YEAST	9.265e-12	32.08	Structural maintenance of chromosomes protein 6 OS...	[more]
SMC5_YEAST	4.758e-8	31.20	Structural maintenance of chromosomes protein 5 OS...	[more]
SMC5_TAKRU	8.116e-8	26.55	Structural maintenance of chromosomes protein 5 OS...	[more]

BLAST of CV190095 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
POPTR_0003s10710.1	6.368e-74	79.29		[more]

BLAST of CV190095 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
D7U753\|D7U753_VITVI	3.754e-77	84.62	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9R9U6\|B9R9U6_RICCO	5.993e-75	82.25	Structural maintenance of chromosomes 6 smc6, puta...	[more]
B9H073\|B9H073_POPTR	8.100e-72	79.29	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
C5X880\|C5X880_SORBI	1.804e-71	79.76	Putative uncharacterized protein Sb02g019360 OS=So...	[more]
C0PG09\|C0PG09_MAIZE	1.995e-70	78.57	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
B9G259\|B9G259_ORYSJ	3.403e-70	78.44	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B8BCZ6\|B8BCZ6_ORYSI	3.403e-70	78.44	Putative uncharacterized protein OS=Oryza sativa s...	[more]
Q8GU52\|Q8GU52_ORYSA	7.581e-70	77.84	SMC6 protein OS=Oryza sativa GN=smc6 PE=2 SV=1	[more]
D7MV22\|D7MV22_ARALY	1.867e-68	76.92	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q9S722\|Q9S722_ARATH	4.160e-68	76.33	SMC-like protein OS=Arabidopsis thaliana GN=MIM PE...	[more]

BLAST of CV190095 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 4


Match Name	E-value	Identity	Description
GSVIVT01013865001	1.801e-79	84.62	assembled CDS	[more]
GSVIVT01014044001	1.184e-30	89.04	assembled CDS	[more]
GSVIVT01014042001	3.573e-19	67.74	assembled CDS	[more]
GSVIVT01032195001	2.402e-7	25.95	assembled CDS	[more]

BLAST of CV190095 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT5G61460.1	2.879e-70	76.33	\| Symbols: MIM, ATRAD18, SMC6B \| P-loop containing...	[more]
AT5G07660.1	7.840e-68	73.37	\| Symbols: SMC6A \| structural maintenance of chrom...	[more]
AT5G15920.1	2.031e-7	24.48	\| Symbols: SMC5 \| structural maintenance of chromo...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003395	RecF/RecN/SMC	PFAM	PF02463	SMC_N	coord: 70..162 score: 3.7
None	No IPR available	GENE3D	3.40.50.300	no description	coord: 5..160 score: 9
None	No IPR available	PANTHER	PTHR19306	STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 (SMC5, SMC6)	coord: 1..168 score: 4.2
None	No IPR available	PANTHER	PTHR19306:SF2	STRUCTURAL MAINTENANCE OF CHROMOSOMES 6 SMC6	coord: 1..168 score: 4.2
None	No IPR available	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 5..162 score: 1.6

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV190095 ID=CV190095; Name=CV190095; organism=Vaccinium corymbosum; type=EST; length=670bp
AGGAGAAAACAGCAAACTTATAAGGCTTTACGAGAGAAACTGAATTCATG
CCAGAAAGCCTTAAACTTGAGATTGCGCAAGTTCGAGAGAAATGCGAGTG
AGCTGAAGCGCCAGTTGACGTGGAAATTTAATGGGCATTTGAAAAAGAAA
GGAATCAGTGGGCTTGTCAAAGTCAATTATCTAGAGGAGACTCTTTCGAT
AGAGGTGAAGATGCCTCAAGATGCATCAAATAACAATGTTCGTGACACTA
GAGGGCTCTCAGGCGGAGAGCGCTCTTTCTCGACATTATGCTTTGCACTA
GCTCTTCATGAAATGACGGAAGCTCCTTTCCGAGCGATGGATGAATTTGA
TGTCTTCATGGATGCAGTTAGCAGGAAAATCAGCTTGGACACCCTTGTGG
ATTTTGCTTTGACCCAGGGATCCCAGTGGATATTTATTACCCCTCACGAT
ATCAGCATGGTAAAACAAGGGGACAGGATTAAGAAGCAGCAAATGGCTGC
TCCTCGCACATGAATTATCATCAGCGACTCCTGCTTCTACTCGAAGCTCG
TTGGTACTATGCTAATGTTGAAACAGTGGTCCGATGAGCGTGAAAATATT
TTCTCTACCAAGTATGTACATATGTATTTATTGAGGTTTTGTTCTCTCGC
ACTCTTGGAATGTGTTCAGG

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005524	ATP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005694	chromosome

Vocabulary: **INTERPRO**
Term	Definition
IPR003395	RecF/RecN/SMC_N
noIPR	unintegrated