CV190132 | GDV

EST Overview


Name	CV190132
Unique Name	CV190132
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	344

Libraries


Library Name	Type
LIBEST_016374 Vco01	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide	2011-02-10
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of CV190132 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0011s12230.3 ()

HSP 1 Score: 112.464 bits (280), Expect = 6.645e-26
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 2

Query:   59 DYNPLQQIPSDGFQAAPKIQILDLSGNPGCLPEHPAFSSLPQLQEPYMRRMHISEIPSDLLGLQKLRVLDLSQNSLHLIPD 301
            D N L QIPSDGFQA P +QILDLSGNP  L  HPAFSSLP L+E Y+R++ + EIPSD+L LQ+L++L+LSQNSLH IP+
Sbjct:  432 DNNALTQIPSDGFQAVPMLQILDLSGNPASLLGHPAFSSLPHLKELYLRQVQLREIPSDILSLQQLQILNLSQNSLHSIPE 512

[Close]

BLAST of CV190132 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0011s12230.2 ()

HSP 1 Score: 112.464 bits (280), Expect = 6.645e-26
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 2

Query:   59 DYNPLQQIPSDGFQAAPKIQILDLSGNPGCLPEHPAFSSLPQLQEPYMRRMHISEIPSDLLGLQKLRVLDLSQNSLHLIPD 301
            D N L QIPSDGFQA P +QILDLSGNP  L  HPAFSSLP L+E Y+R++ + EIPSD+L LQ+L++L+LSQNSLH IP+
Sbjct:  432 DNNALTQIPSDGFQAVPMLQILDLSGNPASLLGHPAFSSLPHLKELYLRQVQLREIPSDILSLQQLQILNLSQNSLHSIPE 512

[Close]

BLAST of CV190132 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0011s12230.1 ()

HSP 1 Score: 112.464 bits (280), Expect = 6.645e-26
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 2

Query:   59 DYNPLQQIPSDGFQAAPKIQILDLSGNPGCLPEHPAFSSLPQLQEPYMRRMHISEIPSDLLGLQKLRVLDLSQNSLHLIPD 301
            D N L QIPSDGFQA P +QILDLSGNP  L  HPAFSSLP L+E Y+R++ + EIPSD+L LQ+L++L+LSQNSLH IP+
Sbjct:  436 DNNALTQIPSDGFQAVPMLQILDLSGNPASLLGHPAFSSLPHLKELYLRQVQLREIPSDILSLQQLQILNLSQNSLHSIPE 516

[Close]

BLAST of CV190132 vs. P. persica 1.0 peptide
Match: ppa003338m ()

HSP 1 Score: 120.553 bits (301), Expect = 1.620e-28
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = 2

Query:   59 DYNPLQQIPSDGFQAAPKIQILDLSGNPGCLPEHPAFSSLPQLQEPYMRRMHISEIPSDLLGLQKLRVLDLSQNSLHLIP 298
            D NPL+QIP DGFQAAP +QILDLSGN   LPEHP+FSSLP LQE Y+RRM + E+P+D+L LQ+LR+LDLSQNSL  +P
Sbjct:  436 DNNPLRQIPPDGFQAAPMLQILDLSGNAASLPEHPSFSSLPHLQELYLRRMQLREVPTDILSLQQLRILDLSQNSLRSVP 515

[Close]

BLAST of CV190132 vs. TrEMBL
Match: B9HZW7|B9HZW7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_568927 PE=4 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.436e-23
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 2

Query:   59 DYNPLQQIPSDGFQAAPKIQILDLSGNPGCLPEHPAFSSLPQLQEPYMRRMHISEIPSDLLGLQKLRVLDLSQNSLHLIPD 301
            D N L QIPSDGFQA P +QILDLSGNP  L  HPAFSSLP L+E Y+R++ + EIPSD+L LQ+L++L+LSQNSLH IP+
Sbjct:  432 DNNALTQIPSDGFQAVPMLQILDLSGNPASLLGHPAFSSLPHLKELYLRQVQLREIPSDILSLQQLQILNLSQNSLHSIPE 512

[Close]

BLAST of CV190132 vs. TrEMBL
Match: B9SRF2|B9SRF2_RICCO (Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1125810 PE=4 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.818e-21
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 2

Query:   59 DYNPLQQIPSDGFQAAPKIQILDLSGNPGCLPEHPAFSSLPQLQEPYMRRMHISEIPSDLLGLQKLRVLDLSQNSLHLIPD 301
            D NPL+QIP DGFQA   +QILDLSGNP  + E P FS LP LQE Y+R + + E+PSD+L L +LR+LDLS+NSL  IP+
Sbjct:  435 DNNPLRQIPLDGFQAVSMLQILDLSGNPASVCELPPFSKLPHLQELYLRHVQLHEVPSDILSLLQLRILDLSRNSLQSIPE 515

HSP 2 Score: 23.0978 bits (48), Expect = 4.818e-21
Identity = 8/9 (88.89%), Postives = 9/9 (100.00%), Query Frame = 1

Query:    1 EEWPGAILK 27
            +EWPGAILK
Sbjct:  416 QEWPGAILK 424

[Close]

BLAST of CV190132 vs. TrEMBL
Match: O04143|O04143_SILLA (Putative uncharacterized protein OS=Silene latifolia PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 6.241e-19
Identity = 46/80 (57.50%), Postives = 62/80 (77.50%), Query Frame = 2

Query:   59 DYNPLQQIPSDGFQAAPKIQILDLSGNPGCLPEHPAFSSLPQLQEPYMRRMHISEIPSDLLGLQKLRVLDLSQNSLHLIP 298
            D NPL ++P +GF A P++QILDLSG    L ++PAF+SL  L E Y+RR+ + E+PSD+L L+KL++LDLSQNSLH IP
Sbjct:  436 DNNPLNKVPLNGFDAVPRLQILDLSGCVSSLVDNPAFASLQHLVELYLRRVKLQEVPSDILMLRKLQILDLSQNSLHSIP 515

[Close]

BLAST of CV190132 vs. TrEMBL
Match: D7L435|D7L435_ARALY (Leucine-rich repeat family protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_478983 PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 9.258e-19
Identity = 47/80 (58.75%), Postives = 56/80 (70.00%), Query Frame = 2

Query:   59 DYNPLQQIPSDGFQAAPKIQILDLSGNPGCLPEHPAFSSLPQLQEPYMRRMHISEIPSDLLGLQKLRVLDLSQNSLHLIP 298
            D NPL QIP DGFQA   ++ILDLSGN     EHP F  LPQLQE Y+ R+ +SE+P D+L L  L +LDL+QNSL  IP
Sbjct:  436 DNNPLTQIPLDGFQAVSGLRILDLSGNAVSFREHPKFCHLPQLQELYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIP 515

HSP 2 Score: 21.557 bits (44), Expect = 9.258e-19
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1

Query:    1 EEWPGAILK 27
            ++WPGAILK
Sbjct:  417 KDWPGAILK 425

[Close]

BLAST of CV190132 vs. TrEMBL
Match: O49750|O49750_ARATH (Leucine-rich repeat protein OS=Arabidopsis thaliana GN=G8B7T7 PE=4 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.664e-17
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 2

Query:   59 DYNPLQQIPSDGFQAAPKIQILDLSGNPGCLPEHPAFSSLPQLQEPYMRRMHISEIPSDLLGLQKLRVLDLSQNSLHLIP 298
            D NPL QIP DGFQ    +QILDLS N     EHP F  LPQL+E Y+ R+ +SE+P D+L L  L +LDL+QNSL  IP
Sbjct:  436 DNNPLNQIPLDGFQVISGLQILDLSVNAVSFREHPKFCHLPQLRELYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIP 515

HSP 2 Score: 22.3274 bits (46), Expect = 1.664e-17
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 1

Query:    1 EEWPGAILKVTF*PLMLE 54
            ++WPGAILK    P+ L+
Sbjct:  417 KDWPGAILKSLPNPMCLK 434

[Close]

BLAST of CV190132 vs. TrEMBL
Match: Q8L7Z2|Q8L7Z2_ARATH (AT3g15410/MJK13_7 OS=Arabidopsis thaliana GN=At3g15410 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.164e-17
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 2

Query:   59 DYNPLQQIPSDGFQAAPKIQILDLSGNPGCLPEHPAFSSLPQLQEPYMRRMHISEIPSDLLGLQKLRVLDLSQNSLHLIP 298
            D NPL QIP DGFQ    +QILDLS N     EHP F  LPQL+E Y+ R+ +SE+P D+L L  L +LDL+QNSL  IP
Sbjct:  436 DNNPLNQIPLDGFQVVSGLQILDLSVNAVSFREHPKFCHLPQLRELYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIP 515

HSP 2 Score: 21.557 bits (44), Expect = 2.164e-17
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1

Query:    1 EEWPGAILK 27
            ++WPGAILK
Sbjct:  417 KDWPGAILK 425

[Close]

BLAST of CV190132 vs. TrEMBL
Match: O49751|O49751_ARATH (Leucine-rich repeat protein OS=Arabidopsis thaliana GN=G8B7T7 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.164e-17
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 2

Query:   59 DYNPLQQIPSDGFQAAPKIQILDLSGNPGCLPEHPAFSSLPQLQEPYMRRMHISEIPSDLLGLQKLRVLDLSQNSLHLIP 298
            D NPL QIP DGFQ    +QILDLS N     EHP F  LPQL+E Y+ R+ +SE+P D+L L  L +LDL+QNSL  IP
Sbjct:  436 DNNPLNQIPLDGFQVVSGLQILDLSVNAVSFREHPKFCHLPQLRELYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIP 515

HSP 2 Score: 21.557 bits (44), Expect = 2.164e-17
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1

Query:    1 EEWPGAILK 27
            ++WPGAILK
Sbjct:  417 KDWPGAILK 425

[Close]

BLAST of CV190132 vs. TrEMBL
Match: Q9M7W9|Q9M7W9_ARATH (MJK13.7 protein OS=Arabidopsis thaliana GN=MJK13.7 PE=4 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.166e-17
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 2

Query:   59 DYNPLQQIPSDGFQAAPKIQILDLSGNPGCLPEHPAFSSLPQLQEPYMRRMHISEIPSDLLGLQKLRVLDLSQNSLHLIP 298
            D NPL QIP DGFQ    +QILDLS N     EHP F  LPQL+E Y+ R+ +SE+P D+L L  L +LDL+QNSL  IP
Sbjct:  436 DNNPLNQIPLDGFQVVSGLQILDLSVNAVSFREHPKFCHLPQLRELYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIP 515

HSP 2 Score: 21.557 bits (44), Expect = 2.166e-17
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1

Query:    1 EEWPGAILK 27
            ++WPGAILK
Sbjct:  417 KDWPGAILK 425

[Close]

BLAST of CV190132 vs. TrEMBL
Match: C5XWM7|C5XWM7_SORBI (Putative uncharacterized protein Sb04g038010 OS=Sorghum bicolor GN=Sb04g038010 PE=4 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.700e-16
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 2

Query:   59 DYNPLQQIPSDGFQAAPKIQILDLSGNPGCLPEHPAFSSLPQLQEPYMRRMHISEIPSDLLGLQKLRVLDLSQNSLHLIPD 301
            D NPL +I S       K+++LDLSGN   LPE  A S+LPQL E Y+RRM + E P+ LLGL++LR+LDLSQNSL  +P+
Sbjct:  438 DNNPLVEISSTDLVPLSKLEVLDLSGNASALPEPSAVSALPQLHELYLRRMKLHEFPNGLLGLKQLRILDLSQNSLTTVPE 518

[Close]

BLAST of CV190132 vs. TrEMBL
Match: C0PF76|C0PF76_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.787e-16
Identity = 44/81 (54.32%), Postives = 56/81 (69.14%), Query Frame = 2

Query:   59 DYNPLQQIPSDGFQAAPKIQILDLSGNPGCLPEHPAFSSLPQLQEPYMRRMHISEIPSDLLGLQKLRVLDLSQNSLHLIPD 301
            D NPL +I S       K+++LDLSGN   LPE  A S+LPQLQE Y+RRM + E P+ LLGL+ LR+LDLSQN L  +P+
Sbjct:  436 DNNPLVEISSTDLVPLSKLEVLDLSGNASALPEPSAVSALPQLQELYLRRMKLHEFPNGLLGLKLLRILDLSQNHLTTVPE 516

[Close]

BLAST of CV190132 vs. Vitis vinifera peptide
Match: GSVIVT01014371001 (assembled CDS)

HSP 1 Score: 121.324 bits (303), Expect = 5.459e-29
Identity = 57/81 (70.37%), Postives = 70/81 (86.42%), Query Frame = 2

Query:   59 DYNPLQQIPSDGFQAAPKIQILDLSGNPGCLPEHPAFSSLPQLQEPYMRRMHISEIPSDLLGLQKLRVLDLSQNSLHLIPD 301
            D NPL+QIP+DGFQA  K+QILDLSGN   LP++PAFSSLPQLQE Y+RRM + E+PSD+L LQ+L++LDLSQNSL LIP+
Sbjct:  436 DNNPLRQIPADGFQAVSKLQILDLSGNSASLPDNPAFSSLPQLQELYLRRMQLCEVPSDILSLQQLQILDLSQNSLQLIPE 516

HSP 2 Score: 21.557 bits (44), Expect = 5.459e-29
Identity = 7/9 (77.78%), Postives = 8/9 (88.89%), Query Frame = 1

Query:    1 EEWPGAILK 27
            +EWPG ILK
Sbjct:  417 QEWPGVILK 425

[Close]

BLAST of CV190132 vs. TAIR peptide
Match: AT3G15410.2 (| Symbols: | Leucine-rich repeat (LRR) family protein | chr3:5203380-5207279 FORWARD LENGTH=590)

HSP 1 Score: 90.8929 bits (224), Expect = 8.378e-20
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 2

Query:   59 DYNPLQQIPSDGFQAAPKIQILDLSGNPGCLPEHPAFSSLPQLQEPYMRRMHISEIPSDLLGLQKLRVLDLSQNSLHLIP 298
            D NPL QIP DGFQ    +QILDLS N     EHP F  LPQL+E Y+ R+ +SE+P D+L L  L +LDL+QNSL  IP
Sbjct:  442 DNNPLNQIPLDGFQVVSGLQILDLSVNAVSFREHPKFCHLPQLRELYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIP 521

HSP 2 Score: 21.557 bits (44), Expect = 8.378e-20
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1

Query:    1 EEWPGAILK 27
            ++WPGAILK
Sbjct:  423 KDWPGAILK 431

[Close]

BLAST of CV190132 vs. TAIR peptide
Match: AT3G15410.1 (| Symbols: | Leucine-rich repeat (LRR) family protein | chr3:5203380-5207279 FORWARD LENGTH=584)

HSP 1 Score: 90.8929 bits (224), Expect = 8.379e-20
Identity = 45/80 (56.25%), Postives = 54/80 (67.50%), Query Frame = 2

Query:   59 DYNPLQQIPSDGFQAAPKIQILDLSGNPGCLPEHPAFSSLPQLQEPYMRRMHISEIPSDLLGLQKLRVLDLSQNSLHLIP 298
            D NPL QIP DGFQ    +QILDLS N     EHP F  LPQL+E Y+ R+ +SE+P D+L L  L +LDL+QNSL  IP
Sbjct:  436 DNNPLNQIPLDGFQVVSGLQILDLSVNAVSFREHPKFCHLPQLRELYLSRIQLSEVPEDILNLSNLIILDLNQNSLQSIP 515

HSP 2 Score: 21.557 bits (44), Expect = 8.379e-20
Identity = 7/9 (77.78%), Postives = 9/9 (100.00%), Query Frame = 1

Query:    1 EEWPGAILK 27
            ++WPGAILK
Sbjct:  417 KDWPGAILK 425

The following BLAST results are available for this feature:

BLAST of CV190132 vs. Populus trichocarpa peptide v2.0
BLAST of CV190132 vs. P. persica 1.0 peptide
BLAST of CV190132 vs. TrEMBL
BLAST of CV190132 vs. Vitis vinifera peptide
BLAST of CV190132 vs. TAIR peptide

BLAST of CV190132 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 3


Match Name	E-value	Identity
POPTR_0011s12230.3	6.645e-26	66.67	[more]
POPTR_0011s12230.2	6.645e-26	66.67	[more]
POPTR_0011s12230.1	6.645e-26	66.67	[more]

BLAST of CV190132 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
ppa003338m	1.620e-28	70.00		[more]

BLAST of CV190132 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
B9HZW7\|B9HZW7_POPTR	1.436e-23	66.67	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9SRF2\|B9SRF2_RICCO	4.818e-21	60.49	Leucine-rich repeat-containing protein, putative O...	[more]
O04143\|O04143_SILLA	6.241e-19	57.50	Putative uncharacterized protein OS=Silene latifol...	[more]
D7L435\|D7L435_ARALY	9.258e-19	58.75	Leucine-rich repeat family protein OS=Arabidopsis ...	[more]
O49750\|O49750_ARATH	1.664e-17	56.25	Leucine-rich repeat protein OS=Arabidopsis thalian...	[more]
Q8L7Z2\|Q8L7Z2_ARATH	2.164e-17	56.25	AT3g15410/MJK13_7 OS=Arabidopsis thaliana GN=At3g1...	[more]
O49751\|O49751_ARATH	2.164e-17	56.25	Leucine-rich repeat protein OS=Arabidopsis thalian...	[more]
Q9M7W9\|Q9M7W9_ARATH	2.166e-17	56.25	MJK13.7 protein OS=Arabidopsis thaliana GN=MJK13.7...	[more]
C5XWM7\|C5XWM7_SORBI	1.700e-16	54.32	Putative uncharacterized protein Sb04g038010 OS=So...	[more]
C0PF76\|C0PF76_MAIZE	3.787e-16	54.32	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]

BLAST of CV190132 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1


Match Name	E-value	Identity	Description
GSVIVT01014371001	5.459e-29	70.37	assembled CDS	[more]

BLAST of CV190132 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT3G15410.2	8.378e-20	56.25	\| Symbols: \| Leucine-rich repeat (LRR) family pro...	[more]
AT3G15410.1	8.379e-20	56.25	\| Symbols: \| Leucine-rich repeat (LRR) family pro...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001611	Leucine-rich repeat	PFAM	PF00560	LRR_1	coord: 5..25 score: 0.11coord: 76..92 score: 0
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	no description	coord: 3..26 score: 0.1coord: 74..94 score
IPR015766	Leucine-rich repeat-containing protein	PANTHER	PTHR23155:SF28	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	coord: 1..91 score: 2.5
None	No IPR available	GENE3D	3.80.10.10	no description	coord: 2..92 score: 1.4
None	No IPR available	PANTHER	PTHR23155	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	coord: 1..91 score: 2.5
None	No IPR available	PROFILE	PS51450	LRR	coord: 5..26 score: 6.734coord: 29..52 score: 4.870coord: 76..95 score: 7
None	No IPR available	SUPERFAMILY	52058	L domain-like	coord: 1..92 score: 8.3

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CV190132 ID=CV190132; Name=CV190132; organism=Vaccinium corymbosum; type=EST; length=344bp
GAAGAATGGCCAGGTGCTATTTTAAAAGTCACTTTCTAACCTCTCATGCT
TGAAGCTGGACTATAACCCACTCCAACAGATCCCATCAGATGGCTTTCAA
GCTGCCCCCAAGATCCAGATTTTGGATCTAAGTGGTAATCCAGGTTGTTT
ACCAGAACATCCAGCATTTTCTAGCTTACCACAATTGCAGGAGCCCTATA
TGAGAAGGATGCATATATCTGAAATTCCATCAGATCTATTGGGATTACAG
AAGTTACGGGTTCTTGATTTGAGCCAAAATTCTCTTCACTTAATTCCAGA
TGTAAGTTACTAGGCTAGTTCTGCCTTACAGAAACCATTCAAAG

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR001611	Leu-rich_rpt
IPR003591	Leu-rich_rpt_typical-subtyp
IPR015766	Leucine-rich repeat-containing protein
noIPR	unintegrated