DW043023

EST Overview
NameDW043023
Unique NameDW043023
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length658
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Homology
BLAST of DW043023 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0017s05610.1 ()

HSP 1 Score: 59.3066 bits (142), Expect = 2.395e-9
Identity = 41/123 (33.33%), Postives = 54/123 (43.90%), Query Frame = 3
Query:   18 QVLTGQGIPNGGPMMNFPPSFGGNQQFYPNNHAMHTLMAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLRQTGESQRRGSVSFTGKKDNASDITNSAPKD 386
            +VLTGQ  PNGGPMMN+  SFGG QQ YPNN AMHT +AA                                                    +Q G+ + RGS++ + +KDN S+  +S+ KD
Sbjct:  314 KVLTGQ-TPNGGPMMNYA-SFGGGQQLYPNNQAMHTFLAAQQFQQLQIHSQKQQQQQQQQQQFQLHQLQQQQLQQQQEQQQQ----------QQGGDLKMRGSLTSSSQKDNGSEANSSSSKD 424          
BLAST of DW043023 vs. P. persica 1.0 peptide
Match: ppa005999m ()

HSP 1 Score: 65.0846 bits (157), Expect = 3.084e-11
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 3
Query:   18 QVLTGQGIPNGGPMMNFPPSFGGNQQFYPNNHAMHTLMAA 137
            +VLTGQ +PNGGPMMNF  SFG  QQFYPNN AMHTL+ A
Sbjct:  321 KVLTGQAMPNGGPMMNFA-SFGSGQQFYPNNQAMHTLLTA 359          
BLAST of DW043023 vs. TrEMBL
Match: D7U1V4|D7U1V4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_102.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00010836001 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.166e-9
Identity = 41/123 (33.33%), Postives = 54/123 (43.90%), Query Frame = 3
Query:   18 QVLTGQGIPNGGPMMNFPPSFGGNQQFYPNNHAMHTLMAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLRQTGESQRRGSVSFTGKKDNASDITNSAPKD 386
            +VLTGQ +PNG PMMNFP S+G   QFYPNN AMHTL+ A                                                    +Q G+ + RGS++   +K+NASD  +SA K+
Sbjct:  239 KVLTGQTMPNGAPMMNFPQSYGTGAQFYPNNQAMHTLLTAQQFQQLQIHSHKQHQLQQHQLHQLQQQQQQIQQQIQQQQMQQEQP-------QQAGDLKIRGSMASPSQKENASDTNSSAVKE 354          
BLAST of DW043023 vs. TrEMBL
Match: B9SU10|B9SU10_RICCO (Transcription factor RF2a, putative OS=Ricinus communis GN=RCOM_0454610 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 7.798e-8
Identity = 28/38 (73.68%), Postives = 32/38 (84.21%), Query Frame = 3
Query:   18 QVLTGQGIPNGGPMMNFPPSFGGNQQFYPNNHAMHTLM 131
            +VLTGQ + NGGPMMN+  SFG  QQFYPNNHAMHTL+
Sbjct:  313 KVLTGQAMANGGPMMNYN-SFGTGQQFYPNNHAMHTLL 349          
BLAST of DW043023 vs. TrEMBL
Match: B9MY63|B9MY63_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_920650 PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.963e-7
Identity = 41/123 (33.33%), Postives = 54/123 (43.90%), Query Frame = 3
Query:   18 QVLTGQGIPNGGPMMNFPPSFGGNQQFYPNNHAMHTLMAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLRQTGESQRRGSVSFTGKKDNASDITNSAPKD 386
            +VLTGQ  PNGGPMMN+  SFGG QQ YPNN AMHT +AA                                                    +Q G+ + RGS++ + +KDN S+  +S+ KD
Sbjct:  253 KVLTGQ-TPNGGPMMNYA-SFGGGQQLYPNNQAMHTFLAAQQFQQLQIHSQKQQQQQQQQQQFQLHQLQQQQLQQQQEQQQQ----------QQGGDLKMRGSLTSSSQKDNGSEANSSSSKD 363          
BLAST of DW043023 vs. Vitis vinifera peptide
Match: GSVIVT01010836001 (assembled CDS)

HSP 1 Score: 65.855 bits (159), Expect = 1.545e-11
Identity = 41/123 (33.33%), Postives = 54/123 (43.90%), Query Frame = 3
Query:   18 QVLTGQGIPNGGPMMNFPPSFGGNQQFYPNNHAMHTLMAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYLRQTGESQRRGSVSFTGKKDNASDITNSAPKD 386
            +VLTGQ +PNG PMMNFP S+G   QFYPNN AMHTL+ A                                                    +Q G+ + RGS++   +K+NASD  +SA K+
Sbjct:  239 KVLTGQTMPNGAPMMNFPQSYGTGAQFYPNNQAMHTLLTAQQFQQLQIHSHKQHQLQQHQLHQLQQQQQQIQQQIQQQQMQQEQP-------QQAGDLKIRGSMASPSQKENASDTNSSAVKE 354          
BLAST of DW043023 vs. TAIR peptide
Match: AT1G06070.1 (| Symbols: | Basic-leucine zipper (bZIP) transcription factor family protein | chr1:1835201-1837116 REVERSE LENGTH=423)

HSP 1 Score: 53.1434 bits (126), Expect = 1.511e-7
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 3
Query:   18 QVLTGQGIPNGGPMMNFPPSFGGNQQFYPNNHAMHTLMAA 137
            +VLTGQG P+ G  MN+  SFG NQQFYPNN +MHT++AA
Sbjct:  302 KVLTGQG-PSNGTSMNYG-SFGSNQQFYPNNQSMHTILAA 339          
The following BLAST results are available for this feature:
BLAST of DW043023 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
POPTR_0017s05610.12.395e-933.33[more]
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BLAST of DW043023 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
ppa005999m3.084e-1175.00[more]
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BLAST of DW043023 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
D7U1V4|D7U1V4_VITVI3.166e-933.33Whole genome shotgun sequence of line PN40024, sca... [more]
B9SU10|B9SU10_RICCO7.798e-873.68Transcription factor RF2a, putative OS=Ricinus com... [more]
B9MY63|B9MY63_POPTR2.963e-733.33Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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BLAST of DW043023 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010108360011.545e-1133.33assembled CDS[more]
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BLAST of DW043023 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G06070.11.511e-765.00| Symbols: | Basic-leucine zipper (bZIP) transcri... [more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 26..77
score
NoneNo IPR availableSEGsegsegcoord: 47..100
score
NoneNo IPR availableSEGsegsegcoord: 46..95
score
NoneNo IPR availableSEGsegsegcoord: 12..65
score
NoneNo IPR availableSEGsegsegcoord: 101..119
score
NoneNo IPR availableSEGsegsegcoord: 4..57
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>DW043023 ID=DW043023; Name=DW043023; organism=Vaccinium corymbosum; type=EST; length=658bp
TCGAGCGGCCGCCCGGGCAGGTACTGACTGGCCAAGGTATTCCGAATGGT
GGACCAATGATGAACTTCCCTCCGTCTTTCGGAGGAAACCAGCAATTTTA
TCCCAACAATCACGCTATGCATACACTCATGGCTGCACAGCAGTTTCAGC
AGCTTCAAATTCACCCCCAGAAGCAGCAGCAGCAGCAGCAGCCGCACCAC
CACCACCAATTTCAACAGCAGCAGCAACTCCAACAATTTCAGCAGCAGCA
ACTCCTGCACCAGGAGCAGCAGCAGCAGCAGGAGCAGTACCTCCGACAAA
CTGGGGAATCACAAAGGCGAGGTTCGGTGTCTTTTACAGGCAAGAAAGAC
AATGCTTCAGATATCACCAATTCTGCACCAAAGGATTGATTGCAGAGTAG
AAATGGGCAAATCTGTCTTTCGTGAAGGTTGAGCCATTCGATTCCCTTGG
TTTCGGTAATGTTGTCAAATATGTCCGCAGTTCTCTGTTGATTAGATGCG
TCCATGTAACTATTTGGTAGGCTGTCATACATCGGACTTCTTTCAAGATT
GAGGGGGCCTATTTTGACTGTAGTTTGTATTCGAATTGTGGCAGTGATTT
AATCCATATGTTTTAGTCGTCCTCTGATACAAGTTTGTACCCCGCCGCCG
AACCCGCT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated