DW043218

EST Overview
NameDW043218
Unique NameDW043218
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length456
Libraries
Library NameType
LIBEST_018810 Subtracted cDNA library of Vaccinium corymbosumcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL2011-01-18
Homology
BLAST of DW043218 vs. TrEMBL
Match: B2BJD6|B2BJD6_RHOCT (Early light-induced protein 7 OS=Rhododendron catawbiense PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.173e-9
Identity = 36/50 (72.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:  118 MATSSVMQSTLVSPVAGVAKGLGSRRTAPCRYMPPRQQRSSGRVVRCMAE 267
            MATSSVMQS LVSPVAGVAKGLGS R  P     P Q+RSS  VVRC AE
Sbjct:    1 MATSSVMQSILVSPVAGVAKGLGSNRLRPAYRHMPHQRRSSSVVVRCTAE 50          
BLAST of DW043218 vs. TrEMBL
Match: B2BJD3|B2BJD3_RHOCT (Early light-induced protein 4 OS=Rhododendron catawbiense PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.412e-9
Identity = 35/53 (66.04%), Postives = 38/53 (71.70%), Query Frame = 1
Query:  118 MATSSVMQSTLVSPVAGVAKGLGSRRTAPCRYMPPRQQRSSGRVVRCMAEVDI 276
            MATSSVMQS LVSPV GVAKG G  RT P     PRQ R+SG +VRCMA+  I
Sbjct:    1 MATSSVMQSILVSPVTGVAKGAGLSRTIPRTCYLPRQGRNSGMLVRCMAKARI 53          
BLAST of DW043218 vs. TrEMBL
Match: B2BJD1|B2BJD1_RHOCT (Early light-induced protein 2 OS=Rhododendron catawbiense PE=2 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.456e-9
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:  118 MATSSVMQSTLVSPVAGVAKGLGSRRTAPCRYMPPRQQRSSGRVVRCMAE 267
            MATSSVMQS LVSPV GVAKG G  RT P     PRQ R+SG +VRCMA+
Sbjct:    1 MATSSVMQSILVSPVTGVAKGAGLNRTIPRSCYLPRQGRNSGMLVRCMAK 50          
BLAST of DW043218 vs. TrEMBL
Match: B2BJD0|B2BJD0_RHOCT (Early light-induced protein 1 OS=Rhododendron catawbiense PE=2 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.819e-9
Identity = 34/50 (68.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:  118 MATSSVMQSTLVSPVAGVAKGLGSRRTAPCRYMPPRQQRSSGRVVRCMAE 267
            MATSSVMQS LVSPV GVAKG G  RT P     PRQ R+SG +VRCMA+
Sbjct:    1 MATSSVMQSILVSPVTGVAKGAGLSRTIPRSCYLPRQGRNSGMLVRCMAK 50          
BLAST of DW043218 vs. TrEMBL
Match: B2BJD2|B2BJD2_RHOCT (Early light-induced protein 3 OS=Rhododendron catawbiense PE=2 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 7.600e-9
Identity = 34/50 (68.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:  118 MATSSVMQSTLVSPVAGVAKGLGSRRTAPCRYMPPRQQRSSGRVVRCMAE 267
            MATSSVMQS LVSPV GVAKG G  RT P     PRQ R SG +VRCMA+
Sbjct:    1 MATSSVMQSILVSPVTGVAKGAGLSRTIPRSSYLPRQGRDSGMLVRCMAK 50          
BLAST of DW043218 vs. TrEMBL
Match: B2BJD4|B2BJD4_RHOCT (Early light-induced protein 5 OS=Rhododendron catawbiense PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 9.926e-9
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 1
Query:  118 MATSSVMQSTLVSPVAGVAKGLGSRRTAP--CRYMPPRQQRSSGRVVRCMAE 267
            MATSSVMQS +VSPV GVAKG G  RT P  C Y+ PRQ R+SG +VRCMA+
Sbjct:    1 MATSSVMQSIMVSPVTGVAKGTGLSRTIPRSCCYL-PRQGRNSGMLVRCMAK 51          
The following BLAST results are available for this feature:
BLAST of DW043218 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 6
Match NameE-valueIdentityDescription
B2BJD6|B2BJD6_RHOCT1.173e-972.00Early light-induced protein 7 OS=Rhododendron cata... [more]
B2BJD3|B2BJD3_RHOCT3.412e-966.04Early light-induced protein 4 OS=Rhododendron cata... [more]
B2BJD1|B2BJD1_RHOCT4.456e-968.00Early light-induced protein 2 OS=Rhododendron cata... [more]
B2BJD0|B2BJD0_RHOCT5.819e-968.00Early light-induced protein 1 OS=Rhododendron cata... [more]
B2BJD2|B2BJD2_RHOCT7.600e-968.00Early light-induced protein 3 OS=Rhododendron cata... [more]
B2BJD4|B2BJD4_RHOCT9.926e-967.31Early light-induced protein 5 OS=Rhododendron cata... [more]
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Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>DW043218 ID=DW043218; Name=DW043218; organism=Vaccinium corymbosum; type=EST; length=456bp
AGCGTGGTCGCGGCCGAGGTACGCGGGGACAACTCAAACCTACAGACATT
GCAGCGAGCAGAAGCTTTTCCATTGTAACCCAGCCAGTACTTCAAGCGTC
AAATTTCAAAAACTCTAATGGCAACCTCATCAGTAATGCAGTCCACCCTC
GTGAGCCCGGTGGCCGGCGTCGCTAAGGGGTTGGGCTCCCGCCGGACAGC
TCCTTGCAGGTACATGCCACCGCGTCAGCAGAGGAGCTCTGGCCGGGTAG
TTCGCTGCATGGCCGAGGTAGATATATGTTACCAGTCTTTCTATACCCAT
TGATAGTTTTCTTGGTATCTACTGTAGAACGTGTAACCCTTGATAGAGCT
CAATGGAAAAATAAGGTTTATGTAGCTAACCCCAATTAACTGCGACTAAT
GCGCGGTTTGGTTTGATTTGGTTAGTAATTACTCTCTCCGTCCCAATTTA
AATCTT
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