DW043409

EST Overview
NameDW043409
Unique NameDW043409
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length739
Libraries
Library NameType
LIBEST_018810 Subtracted cDNA library of Vaccinium corymbosumcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Vaccinium corymbosum unigene v12011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL2011-01-18
InterProScan analysis for Vaccinium corymbosum unigene v12011-01-18
Homology
[Close]
BLAST of DW043409 vs. TrEMBL
Match: B2BJD2|B2BJD2_RHOCT (Early light-induced protein 3 OS=Rhododendron catawbiense PE=2 SV=1)

HSP 1 Score: 44.669 bits (104), Expect = 1.222e-7
Identity = 35/105 (33.33%), Postives = 48/105 (45.71%), Query Frame = 1 
Query:  364 ARVVGLKPMTP-CRYMPRQQRSSSRLVRCMAQAGPKKEVEPPV-------------TLSQQARGPAPISFRTLVPXFQWGLTXPGKQKSHRGHEVSAEIGIRGLP 636
            A+  GL    P   Y+PRQ R S  LVRCMA+ G K+EVE PV              L+    GP  I+ R  +  F   +      +  +G +V A+I   G+P
Sbjct:   19 AKGAGLSRTIPRSSYLPRQGRDSGMLVRCMAKDGKKEEVESPVKATVAKARIDFFDLLAFSGPGPERINGRLAMVGFVAAIAV----ELSKGEDVFAQISNGGIP 119

HSP 2 Score: 36.1946 bits (82), Expect = 1.222e-7
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:  300 MAASSVMQSILVSPATGVAK 359
            MA SSVMQSILVSP TGVAK
Sbjct:    1 MATSSVMQSILVSPVTGVAK 20
[Close]
BLAST of DW043409 vs. TrEMBL
Match: B2BJD1|B2BJD1_RHOCT (Early light-induced protein 2 OS=Rhododendron catawbiense PE=2 SV=1)

HSP 1 Score: 44.669 bits (104), Expect = 1.222e-7
Identity = 30/91 (32.97%), Postives = 45/91 (49.45%), Query Frame = 1 
Query:  403 YMPRQQRSSSRLVRCMAQAGPKKEVEPPV-------------TLSQQARGPAPISFRTLVPXFQWGLTXPGKQKSHRGHEVSAEIGIRGLP 636
            Y+PRQ R+S  LVRCMA+ G K+EVE P+              L+    GP  I+ R  +  F   +      + ++G +V A+I   G+P
Sbjct:   33 YLPRQGRNSGMLVRCMAKDGRKEEVESPIEANVAKVKTDFFDLLAFSGPGPERINGRLAMVGFVAAIAV----ELYKGEDVFAQISNGGIP 119

HSP 2 Score: 36.1946 bits (82), Expect = 1.222e-7
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:  300 MAASSVMQSILVSPATGVAK 359
            MA SSVMQSILVSP TGVAK
Sbjct:    1 MATSSVMQSILVSPVTGVAK 20
[Close]
BLAST of DW043409 vs. TrEMBL
Match: B2BJD0|B2BJD0_RHOCT (Early light-induced protein 1 OS=Rhododendron catawbiense PE=2 SV=1)

HSP 1 Score: 44.669 bits (104), Expect = 1.222e-7
Identity = 30/91 (32.97%), Postives = 45/91 (49.45%), Query Frame = 1 
Query:  403 YMPRQQRSSSRLVRCMAQAGPKKEVEPPV-------------TLSQQARGPAPISFRTLVPXFQWGLTXPGKQKSHRGHEVSAEIGIRGLP 636
            Y+PRQ R+S  LVRCMA+ G K+EVE P+              L+    GP  I+ R  +  F   +      + ++G +V A+I   G+P
Sbjct:   33 YLPRQGRNSGMLVRCMAKDGRKEEVESPIEANVAKVRTDFFDLLAFSGPGPERINGRLAMVGFVAAIAV----ELYKGEDVFAQISNGGIP 119

HSP 2 Score: 36.1946 bits (82), Expect = 1.222e-7
Identity = 18/20 (90.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:  300 MAASSVMQSILVSPATGVAK 359
            MA SSVMQSILVSP TGVAK
Sbjct:    1 MATSSVMQSILVSPVTGVAK 20
[Close]
BLAST of DW043409 vs. TrEMBL
Match: B2BJD4|B2BJD4_RHOCT (Early light-induced protein 5 OS=Rhododendron catawbiense PE=2 SV=1)

HSP 1 Score: 43.8986 bits (102), Expect = 3.465e-7
Identity = 36/100 (36.00%), Postives = 50/100 (50.00%), Query Frame = 1 
Query:  364 ARVVGLKPMTP--CRYMPRQQRSSSRLVRCMAQAGPKKEVEPP----VTLSQQA-RGPAP--ISFRTLVPXFQWGLTXPGKQKSHRGHEVSAEIGIRGLP 636
            A+  GL    P  C Y+PRQ R+S  LVRCMA+ G K+E   P    V     A +GPAP  I+ R  +  F   +      +  +G +V A+I   G+P
Sbjct:   19 AKGTGLSRTIPRSCCYLPRQGRNSGMLVRCMAKGGQKEEAGSPPKAKVLFDLLAFKGPAPERINGRLAMIGFVAAIAV----ELSKGEDVFAQISNGGIP 114

HSP 2 Score: 35.4242 bits (80), Expect = 3.465e-7
Identity = 17/20 (85.00%), Postives = 18/20 (90.00%), Query Frame = 3 
Query:  300 MAASSVMQSILVSPATGVAK 359
            MA SSVMQSI+VSP TGVAK
Sbjct:    1 MATSSVMQSIMVSPVTGVAK 20
The following BLAST results are available for this feature:
BLAST of DW043409 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 4
Match NameE-valueIdentityDescription
B2BJD2|B2BJD2_RHOCT1.222e-733.33Early light-induced protein 3 OS=Rhododendron cata... [more]
B2BJD1|B2BJD1_RHOCT1.222e-732.97Early light-induced protein 2 OS=Rhododendron cata... [more]
B2BJD0|B2BJD0_RHOCT1.222e-732.97Early light-induced protein 1 OS=Rhododendron cata... [more]
B2BJD4|B2BJD4_RHOCT3.465e-736.00Early light-induced protein 5 OS=Rhododendron cata... [more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 26..53
score
NoneNo IPR availableSEGsegsegcoord: 123..134
score
NoneNo IPR availableSEGsegsegcoord: 13..24
score
NoneNo IPR availableSEGsegsegcoord: 9..36
score

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>DW043409 ID=DW043409; Name=DW043409; organism=Vaccinium corymbosum; type=EST; length=739bp
AAAATCTAGATCACAATGACATCACGCACACTACCACACCACACTAACAC
CATCACACACCGCGGGAACTCACGCTCACACTCGACACCGCGTCTACTCA
CACAACGACATCATACGACACACTATACACGACGTCGCGTACGACGCGAC
ACGACGGTACCGACGCGGGGAAACACACCTCACACACAACATTAACTACA
CCTAAACCACGACACACTGGCACAAGTTTGTTGAAAAGTTATTCTAAACA
TTACGACCATACGACCATAAACCCTAAATCCCTAAGCTAATACTCTCCAA
TGGCCGCCTCATCAGTAATGCAGTCCATACTAGTGAGCCCAGCGACAGGT
GTCGCCAAGCCCGGCGCGCGTGGTGGGACTGAAACCGATGACTCCTTGCC
GCTATATGCCCCGTCAGCAGAGGAGCTCTAGCCGGCTAGTGCGGTGCATG
GCCCAGGCTGGTCCGAAGAAAGAAGTAGAACCTCCCGTTACGTTGTCCCA
ACAGGCCCGAGGCCCAGCCCCGATTTCTTTTCGAACGTTGGTTCCGCNTT
TTCAGTGGGGCCTTACCCNCCCCGGGAAGCAAAAATCTCACAGGGGGCAC
GAAGTTTCTGCGGAAATTGGAATACGGGGCCTTCCCCCGTTGGGGGCGAA
CCCAAATTTTTCGGCCCGCGTTGGGGGAAAACCTCCTTTACCCCATATTC
GGGGGTTTCACGGGGAATGTTGTNTATTTNTGGGTGGGG
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: INTERPRO
TermDefinition
noIPRunintegrated