CF810562

EST Overview
NameCF810562
Unique NameCF810562
TypeEST
OrganismVaccinium corymbosum (northern highbush blueberry)
Sequence length586
Libraries
Library NameType
LIBEST_014530 cDNA cold acclimated Bluecrop librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Vaccinium corymbosum unigene v1EST
Homology
[Close]
BLAST of CF810562 vs. DB:swissprot:display
Match: LSM2_MOUSE (U6 snRNA-associated Sm-like protein LSm2 OS=Mus musculus GN=Lsm2 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.614e-32
Identity = 67/90 (74.44%), Postives = 77/90 (85.56%), Query Frame = 3 
Query:   99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA 368
            MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
[Close]
BLAST of CF810562 vs. DB:swissprot:display
Match: LSM2_HUMAN (U6 snRNA-associated Sm-like protein LSm2 OS=Homo sapiens GN=LSM2 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.614e-32
Identity = 67/90 (74.44%), Postives = 77/90 (85.56%), Query Frame = 3 
Query:   99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREA 368
            MLF+S+FK LVG++V VELKNDL+I GTLHSVDQYLNIKL +  V D +KYPHMLSV+NCFIRGSVVRYVQLP D VD +LL DA R+EA
Sbjct:    1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEA 90
[Close]
BLAST of CF810562 vs. DB:swissprot:display
Match: LSM2_DICDI (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Dictyostelium discoideum GN=lsm2 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.740e-30
Identity = 61/91 (67.03%), Postives = 78/91 (85.71%), Query Frame = 3 
Query:   99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREAR 371
            MLFFS++K LVG+E+TVELKNDL+I G L SVDQ+LNIKL++ +V ++DKYP+M+SV+NCFIRGSVVRYV LP + VD+E L D +R EAR
Sbjct:    1 MLFFSFYKSLVGKEITVELKNDLSITGLLQSVDQFLNIKLKDIKVNEEDKYPYMISVKNCFIRGSVVRYVHLPAEDVDVETLQDHSRLEAR 91
[Close]
BLAST of CF810562 vs. DB:swissprot:display
Match: LSM2_YEAST (U6 snRNA-associated Sm-like protein LSm2 OS=Saccharomyces cerevisiae GN=LSM2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.948e-26
Identity = 59/89 (66.29%), Postives = 69/89 (77.53%), Query Frame = 3 
Query:   99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE 365
            MLFFS+FK LV +EV VELKND+ I+GTL SVDQ+LN+KL+N    D+ KYPH+ SVRN FIRGS VRYV L  + VD  LL DATRRE
Sbjct:    1 MLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTVRYVYLNKNMVDTNLLQDATRRE 89
[Close]
BLAST of CF810562 vs. DB:swissprot:display
Match: LSM2_SCHPO (U6 snRNA-associated Sm-like protein LSm2 OS=Schizosaccharomyces pombe GN=lsm2 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.257e-25
Identity = 57/89 (64.04%), Postives = 69/89 (77.53%), Query Frame = 3 
Query:   99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRRE 365
            MLF+S+FK L+  EVTVELKND++IRG L SVDQ+LN+KLEN  VVD  KYPHM +V++ FIRGSVVRYV +    VD  LL DA RR+
Sbjct:    1 MLFYSFFKTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLENISVVDASKYPHMAAVKDLFIRGSVVRYVHMSSAYVDTILLADACRRD 89
[Close]
BLAST of CF810562 vs. DB:swissprot:display
Match: LSM2_ENTBH (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Enterocytozoon bieneusi (strain H348) GN=LSM2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.206e-12
Identity = 36/91 (39.56%), Postives = 59/91 (64.84%), Query Frame = 3 
Query:   99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKY----PHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATR 359
            MLFF YFK  +  E+ V LKND++I G L +VD +LNIK+EN   +  +++      + +++ C IRGS ++ V+L  +G++ E + +ATR
Sbjct:    1 MLFFEYFKSQLNNEIIVNLKNDISISGILKNVDPFLNIKIENVIAISTNEFIKINKSITNIQLCSIRGSAIKSVELKKNGLE-EHMVEATR 90
[Close]
BLAST of CF810562 vs. DB:swissprot:display
Match: LSM2_ENCCU (Probable U6 snRNA-associated Sm-like protein LSm2 OS=Encephalitozoon cuniculi GN=LSM2 PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.797e-7
Identity = 26/75 (34.67%), Postives = 45/75 (60.00%), Query Frame = 3 
Query:   99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPD 323
            MLF+ +F+  +G  V+V LK  + + G L  +D YLN+ L + R++    +P + S+  C IRGS ++Y+ +  D
Sbjct:    1 MLFYEFFRSSIGSRVSVMLKAGVYVSGRLGGIDPYLNLSLLDVRIL--SSHPGLSSISVCSIRGSSIKYILVDKD 73
[Close]
BLAST of CF810562 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0003s01050.1 ()

HSP 1 Score: 183.341 bits (464), Expect = 8.938e-47
Identity = 88/92 (95.65%), Postives = 92/92 (100.00%), Query Frame = 3 
Query:   99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374
            MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP+GVD++LLHDATRREARG
Sbjct:    1 MLFFSYFKDLVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPEGVDVDLLHDATRREARG 92
[Close]
BLAST of CF810562 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0004s22870.1 ()

HSP 1 Score: 78.5666 bits (192), Expect = 3.101e-15
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 3 
Query:  252 PHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374
            P  LSVRNCFIRGSVVRYVQLPP+GVD++LLHDATRREARG
Sbjct:   11 PMRLSVRNCFIRGSVVRYVQLPPEGVDVDLLHDATRREARG 51
[Close]
BLAST of CF810562 vs. P. persica 1.0 peptide
Match: ppa013967m ()

HSP 1 Score: 182.57 bits (462), Expect = 1.096e-46
Identity = 88/92 (95.65%), Postives = 92/92 (100.00%), Query Frame = 3 
Query:   99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374
            MLFFSYFK+LVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQ+KYPHMLSVRNCFIRGSVVRYVQLPP+GVD+ELLHDATRREARG
Sbjct:    1 MLFFSYFKELVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNCFIRGSVVRYVQLPPEGVDVELLHDATRREARG 92
[Close]
BLAST of CF810562 vs. TrEMBL
Match: D7TPA7|D7TPA7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_104.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00011077001 PE=4 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.254e-46
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 3 
Query:   90 LATMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374
            L  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP+GVDIELLHDATRREARG
Sbjct:   42 LFNMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPEGVDIELLHDATRREARG 136
[Close]
BLAST of CF810562 vs. TrEMBL
Match: A9PD52|A9PD52_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_813708 PE=4 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.023e-44
Identity = 88/92 (95.65%), Postives = 92/92 (100.00%), Query Frame = 3 
Query:   99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374
            MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP+GVD++LLHDATRREARG
Sbjct:    1 MLFFSYFKDLVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPEGVDVDLLHDATRREARG 92
[Close]
BLAST of CF810562 vs. TrEMBL
Match: B9SFP2|B9SFP2_RICCO (Speckle-type POZ protein, putative OS=Ricinus communis GN=RCOM_0648390 PE=4 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.336e-44
Identity = 89/91 (97.80%), Postives = 91/91 (100.00%), Query Frame = 3 
Query:  102 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374
            LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP+GVDI+LLHDATRREARG
Sbjct:  409 LFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPEGVDIDLLHDATRREARG 499
[Close]
BLAST of CF810562 vs. TrEMBL
Match: A9PBV8|A9PBV8_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.888e-44
Identity = 87/92 (94.57%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:   99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374
            MLFFSYFKDLVG+EVTVELKNDLAIRG LHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP+GVD++LLHDATRREARG
Sbjct:    1 MLFFSYFKDLVGKEVTVELKNDLAIRGNLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPEGVDVDLLHDATRREARG 92
[Close]
BLAST of CF810562 vs. TrEMBL
Match: Q9ZVT4|Q9ZVT4_ARATH (F15K9.7 protein OS=Arabidopsis thaliana GN=F15K9.7 PE=4 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.131e-43
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = 3 
Query:   87 CLATMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374
            C    LFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREARG
Sbjct:   18 CSLVQLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPKDGVDVDLLHDAARREARG 113
[Close]
BLAST of CF810562 vs. TrEMBL
Match: Q1H595|Q1H595_ARATH (At1g03330 OS=Arabidopsis thaliana GN=At1g03330 PE=4 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.477e-43
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:   99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374
            MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREARG
Sbjct:    1 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPKDGVDVDLLHDAARREARG 92
[Close]
BLAST of CF810562 vs. TrEMBL
Match: D7KCE0|D7KCE0_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_470311 PE=4 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.477e-43
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:   99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374
            MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREARG
Sbjct:    1 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPKDGVDVDLLHDAARREARG 92
[Close]
BLAST of CF810562 vs. TrEMBL
Match: B8BAV8|B8BAV8_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_27848 PE=4 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.520e-43
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 3 
Query:   93 ATMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374
            AT LFFSYFK+LVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYV LP DGVDI++LHDATRREARG
Sbjct:   26 ATQLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVLLPQDGVDIDILHDATRREARG 119
[Close]
BLAST of CF810562 vs. TrEMBL
Match: Q0J7Y5|Q0J7Y5_ORYSJ (Os08g0154700 protein OS=Oryza sativa subsp. japonica GN=Os08g0154700 PE=4 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 7.333e-43
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:   99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374
            MLFFSYFK+LVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYV LP DGVDI++LHDATRREARG
Sbjct:    1 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVLLPQDGVDIDILHDATRREARG 92
[Close]
BLAST of CF810562 vs. TrEMBL
Match: C5YGY2|C5YGY2_SORBI (Putative uncharacterized protein Sb07g003620 OS=Sorghum bicolor GN=Sb07g003620 PE=4 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.333e-43
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:   99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374
            MLFFSYFK+LVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYV LP DGVDI++LHDATRREARG
Sbjct:    1 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVLLPQDGVDIDILHDATRREARG 92
[Close]
BLAST of CF810562 vs. Vitis vinifera peptide
Match: GSVIVT01011077001 (assembled CDS)

HSP 1 Score: 186.808 bits (473), Expect = 4.975e-48
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 3 
Query:   90 LATMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374
            L  MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPP+GVDIELLHDATRREARG
Sbjct:   42 LFNMLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPEGVDIELLHDATRREARG 136
[Close]
BLAST of CF810562 vs. TAIR peptide
Match: AT1G03330.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr1:818161-819297 REVERSE LENGTH=93)

HSP 1 Score: 179.489 bits (454), Expect = 1.138e-45
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:   99 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPPDGVDIELLHDATRREARG 374
            MLFFSYFKDLVG+EVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLP DGVD++LLHDA RREARG
Sbjct:    1 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPKDGVDVDLLHDAARREARG 92
The following BLAST results are available for this feature:
BLAST of CF810562 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 7
Match NameE-valueIdentityDescription
LSM2_MOUSE1.614e-3274.44U6 snRNA-associated Sm-like protein LSm2 OS=Mus mu... [more]
LSM2_HUMAN1.614e-3274.44U6 snRNA-associated Sm-like protein LSm2 OS=Homo s... [more]
LSM2_DICDI5.740e-3067.03Probable U6 snRNA-associated Sm-like protein LSm2 ... [more]
LSM2_YEAST2.948e-2666.29U6 snRNA-associated Sm-like protein LSm2 OS=Saccha... [more]
LSM2_SCHPO4.257e-2564.04U6 snRNA-associated Sm-like protein LSm2 OS=Schizo... [more]
LSM2_ENTBH9.206e-1239.56Probable U6 snRNA-associated Sm-like protein LSm2 ... [more]
LSM2_ENCCU1.797e-734.67Probable U6 snRNA-associated Sm-like protein LSm2 ... [more]
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BLAST of CF810562 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
POPTR_0003s01050.18.938e-4795.65[more]
POPTR_0004s22870.13.101e-1587.80[more]
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BLAST of CF810562 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
ppa013967m1.096e-4695.65[more]
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BLAST of CF810562 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10
Match NameE-valueIdentityDescription
D7TPA7|D7TPA7_VITVI9.254e-4696.84Whole genome shotgun sequence of line PN40024, sca... [more]
A9PD52|A9PD52_POPTR1.023e-4495.65Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9SFP2|B9SFP2_RICCO1.336e-4497.80Speckle-type POZ protein, putative OS=Ricinus comm... [more]
A9PBV8|A9PBV8_POPTR3.888e-4494.57Putative uncharacterized protein OS=Populus tricho... [more]
Q9ZVT4|Q9ZVT4_ARATH1.131e-4390.63F15K9.7 protein OS=Arabidopsis thaliana GN=F15K9.7... [more]
Q1H595|Q1H595_ARATH1.477e-4394.57At1g03330 OS=Arabidopsis thaliana GN=At1g03330 PE=... [more]
D7KCE0|D7KCE0_ARALY1.477e-4394.57Putative uncharacterized protein OS=Arabidopsis ly... [more]
B8BAV8|B8BAV8_ORYSI2.520e-4392.55Putative uncharacterized protein OS=Oryza sativa s... [more]
Q0J7Y5|Q0J7Y5_ORYSJ7.333e-4393.48Os08g0154700 protein OS=Oryza sativa subsp. japoni... [more]
C5YGY2|C5YGY2_SORBI7.333e-4393.48Putative uncharacterized protein Sb07g003620 OS=So... [more]
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BLAST of CF810562 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1
Match NameE-valueIdentityDescription
GSVIVT010110770014.975e-4896.84assembled CDS[more]
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BLAST of CF810562 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G03330.11.138e-4594.57| Symbols: | Small nuclear ribonucleoprotein fami... [more]
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InterPro
Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163Like-Sm ribonucleoprotein (LSM) domainPFAMPF01423LSMcoord: 21..86
score: 1.1
IPR006649Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-typeSMARTSM00651no descriptioncoord: 19..86
score: 1.3
IPR010920Like-Sm ribonucleoprotein (LSM)-related domainSUPERFAMILY50182Sm-like ribonucleoproteinscoord: 17..104
score: 6.6
IPR016654U6 snRNA-associated Sm-like protein LSm2PIRPIRSF016394U6 snRNA-associated Sm-like protein LSm2coord: 15..107
score: 4.6
NoneNo IPR availableGENE3D2.30.30.100no descriptioncoord: 15..96
score: 1.3
NoneNo IPR availablePANTHERPTHR13829SNRNP CORE PROTEIN FAMILY MEMBERcoord: 8..107
score: 8
NoneNo IPR availablePANTHERPTHR13829:SF2U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM2coord: 8..107
score: 8

Properties
Property NameValue
Singlet in analysisVaccinium corymbosum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>CF810562 ID=CF810562; Name=CF810562; organism=Vaccinium corymbosum; type=EST; length=586bp
GCGTCGCAGAGAAATACATACGCCGCCTAGTTCGAACTTAGGTCTCTCGG
AGTTGATCCAAAAGAGAGCAAAAGGGGGCAGAAAATTGCCTCGCAACAAT
GTTGTTCTTCTCGTATTTCAAGGACCTAGTGGGCAGAGAAGTGACTGTTG
AACTGAAGAACGATCTAGCCATTCGTGGCACTCTGCATTCTGTTGACCAG
TATCTCAATATTAAGCTTGAGAACACTAGGGTTGTCGATCAAGACAAGTA
TCCCCACATGCTGTCAGTGAGGAACTGTTTTATCAGAGGATCTGTGGTGA
GGTATGTCCAGTTACCTCCGGATGGAGTTGACATTGAACTGCTTCATGAT
GCCACAAGAAGAGAAGCTCGCGGCAGCTGAAATTCTACAGTGAAGAATCC
TCTGTAATTTTCATTTCAAGTTGAGATGTATTTGTAGTATTTGTTTCTGG
CTTTGGATAAACCTTTCGCATTTCCAATGGCTTGAAGTTATACATTAGGT
ACTTTTGAGTTTGTGTGTGTGTGTGAGGAAAGGTTGAACTTAAAAAATTC
ATTACTTCAGAGGAAGCAGATAGGTTTCTCTGTTCT
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: KEGG ORTHOLOGY
TermDefinition
K12621LSM2; U6 snRNA-associated Sm-like protein LSm2
Vocabulary: KEGG PATHWAY
TermDefinition
ko03020RNA polymerase
Vocabulary: INTERPRO
TermDefinition
IPR001163Sm_dom_euk/arc
IPR006649Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type
IPR010920LSM_dom_sf
IPR016654U6_snRNA_Lsm2
noIPRunintegrated