CF810676 | GDV

EST Overview


Name	CF810676
Unique Name	CF810676
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	494

Libraries


Library Name	Type
LIBEST_014530 cDNA cold acclimated Bluecrop library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Swissprot	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide	2011-02-10
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of CF810676 vs. DB:swissprot:display
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.889e-16
Identity = 45/92 (48.91%), Postives = 56/92 (60.87%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYPNPPRNAA-GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +PN    A  G A G  WK ++ A KAP++  AEK+  EY KNL+AYNK+ A G  EEEESDK RS+VND+DED +
Sbjct:   42 AFFVFMEDFRKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGAAEEEESDKSRSEVNDDDEDQD 133

[Close]

BLAST of CF810676 vs. DB:swissprot:display
Match: HMGL_SOYBN (HMG1/2-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.222e-16
Identity = 46/94 (48.94%), Postives = 60/94 (63.83%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYP-NPPRNAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRV--EEEESDKLRSKVNDEDEDDE 306
            A F FM          +P N   +A G AAG  WK+MS+A KAPYV  +EK+  EY KN+ AYNK+ A+G    +EEES+K  S+VNDED+D+E
Sbjct:   50 AFFVFMEEFRKVFNKEHPENKAVSAVGKAAGAKWKTMSDAEKAPYVAKSEKRKVEYEKNMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEE 143

[Close]

BLAST of CF810676 vs. DB:swissprot:display
Match: HMGL_VICFA (HMG1/2-like protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.599e-15
Identity = 47/92 (51.09%), Postives = 58/92 (63.04%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYPNPPRNAA-GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +PN    AA G A G  WKS+SE  KAPYV+ A KK  EY   L+AYNK+L +G+ +EE SDK +S+VNDEDED+E
Sbjct:   51 AFFVFMADFREQYKKDHPNNKSVAAVGKACGEEWKSLSEEEKAPYVDRALKKKEEYEITLQAYNKKL-EGKDDEEGSDKSKSEVNDEDEDEE 141

[Close]

BLAST of CF810676 vs. DB:swissprot:display
Match: HMGL_WHEAT (HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.323e-11
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = 1

Query:  103 AAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYN----------KRLADGRVE---EEESDKLRSKVNDEDEDD 303
            A G AAG  WKS+SE+ KAPYV  A K   EY+K + AYN          K+ A   VE   EEESDK +S++ND+D+D+
Sbjct:   72 AVGKAAGERWKSLSESEKAPYVAKANKLKGEYNKAIAAYNKGESAAAAAPKKAAAKEVEEEDEEESDKSKSEINDDDDDE 151

[Close]

BLAST of CF810676 vs. DB:swissprot:display
Match: MNB1B_MAIZE (DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.080e-11
Identity = 38/77 (49.35%), Postives = 49/77 (63.64%), Query Frame = 1

Query:  103 AAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNK------RLADGRVE----EEESDKLRSKVNDEDEDD 303
            A G AAG  WKS+SE+ KAPYV  A K   EY+K + AYNK      + A  + E    EEESDK +S+VNDED+++
Sbjct:   71 AVGKAAGDRWKSLSESDKAPYVAKANKLKLEYNKAIAAYNKGESTAAKKAPAKEEEEEDEEESDKSKSEVNDEDDEE 147

[Close]

BLAST of CF810676 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0005s27390.1 ()

HSP 1 Score: 85.5001 bits (210), Expect = 1.857e-17
Identity = 47/96 (48.96%), Postives = 58/96 (60.42%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYP-NPPRNAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDERMVG 318
            A F FM          +P N    A G A G  WKS+SEA KAP+V  A+K+  EY K ++AYNK  A+G  EEEES+K  S+VND+DEDDE   G
Sbjct:   50 AFFVFMEEFREQYKREHPKNKSVAAVGKAGGDKWKSLSEAEKAPFVAKADKRKVEYEKKMKAYNKEQAEGPKEEEESEKSMSEVNDDDEDDEEGSG 145

[Close]

BLAST of CF810676 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0002s01000.2 ()

HSP 1 Score: 84.7297 bits (208), Expect = 3.168e-17
Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYP-NPPRNAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +P N    A G A G  WKS+S A KAPYV  A+K+  EY K ++AYNK  A+G  EEEES+K  S+VNDEDEDDE
Sbjct:   49 AFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKADKRKVEYEKKMKAYNKEQAEGPKEEEESEKSVSEVNDEDEDDE 140

[Close]

BLAST of CF810676 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0002s01000.1 ()

HSP 1 Score: 84.7297 bits (208), Expect = 3.168e-17
Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYP-NPPRNAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +P N    A G A G  WKS+S A KAPYV  A+K+  EY K ++AYNK  A+G  EEEES+K  S+VNDEDEDDE
Sbjct:   49 AFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKADKRKVEYEKKMKAYNKEQAEGPKEEEESEKSVSEVNDEDEDDE 140

[Close]

BLAST of CF810676 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0005s10440.1 ()

HSP 1 Score: 84.7297 bits (208), Expect = 3.168e-17
Identity = 48/92 (52.17%), Postives = 59/92 (64.13%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYPNPPRNAA-GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +PN    AA G A G  WKS+SEA KAPY   AEK+  EY+K++ AYNKRLA G   ++ESDK +S+VNDEDE+DE
Sbjct:   45 AFFVFMEDFRKQYKESHPNNKSVAAVGKAGGDKWKSLSEAEKAPYAAKAEKRKFEYNKDMAAYNKRLAGG--NDDESDKSKSEVNDEDEEDE 134

[Close]

BLAST of CF810676 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0010s19720.1 ()

HSP 1 Score: 55.4546 bits (132), Expect = 2.058e-8
Identity = 39/107 (36.45%), Postives = 55/107 (51.40%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYPNPPR-NAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKR--LADGRVEE------EESDKLRSKVN-------DEDEDDE 306
            A F F+          +PN    +A G A G  WKS+S A KAPY   A K+ ++Y K + AYNK+    DG  ++      E+S K +S+VN       +EDEDD+
Sbjct:   62 AFFVFLEEFRKVYKQEHPNVKAVSAVGKAGGEKWKSLSAAEKAPYEAKAAKRKSDYEKLMTAYNKKQDTDDGDDDDNDDDNIEQSHKSKSEVNGQNDESDEEDEDDD 168

[Close]

BLAST of CF810676 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0008s06730.2 ()

HSP 1 Score: 53.5286 bits (127), Expect = 7.822e-8
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 1

Query:  100 NAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKR--LADGRVEEEE----SDKLRSKVNDEDEDDE 306
            +A G A G  WKSMS A KAPY   A  K ++Y K + AY+K+    DG  +EE+    S + +S+V+ +D+ DE
Sbjct:   85 SAVGKAGGEKWKSMSAAEKAPYEAKAAIKKSDYGKLMTAYSKKQETDDGGADEEDDYKHSHRSKSEVDGQDDSDE 159

[Close]

BLAST of CF810676 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0008s06730.1 ()

HSP 1 Score: 53.5286 bits (127), Expect = 7.822e-8
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 1

Query:  100 NAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKR--LADGRVEEEE----SDKLRSKVNDEDEDDE 306
            +A G A G  WKSMS A KAPY   A  K ++Y K + AY+K+    DG  +EE+    S + +S+V+ +D+ DE
Sbjct:   85 SAVGKAGGEKWKSMSAAEKAPYEAKAAIKKSDYGKLMTAYSKKQETDDGGADEEDDYKHSHRSKSEVDGQDDSDE 159

[Close]

BLAST of CF810676 vs. P. persica 1.0 peptide
Match: ppa012962m ()

HSP 1 Score: 91.2781 bits (225), Expect = 2.416e-19
Identity = 50/94 (53.19%), Postives = 63/94 (67.02%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYPNPPRNAA-GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADG--RVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +PN    AA G A G  WKS+SEA KAPYV  AEK+  EY+KN++AYNKRLA+G    +EEESDK +S+VND+DED++
Sbjct:   44 AFFVFMEDFREKYKKEHPNNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYNKNIQAYNKRLAEGPNGADEEESDKSKSEVNDDDEDED 137

[Close]

BLAST of CF810676 vs. P. persica 1.0 peptide
Match: ppa012955m ()

HSP 1 Score: 91.2781 bits (225), Expect = 2.416e-19
Identity = 50/94 (53.19%), Postives = 63/94 (67.02%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYPNPPRNAA-GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADG--RVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +PN    AA G A G  WKS+SEA KAPYV  AEK+  EY+KN++AYNKRLA+G    +EEESDK +S+VND+DED++
Sbjct:   44 AFFVFMEDFREKYKKEHPNNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYNKNIQAYNKRLAEGPNGADEEESDKSKSEVNDDDEDED 137

[Close]

BLAST of CF810676 vs. P. persica 1.0 peptide
Match: ppa011662m ()

HSP 1 Score: 91.2781 bits (225), Expect = 2.416e-19
Identity = 50/94 (53.19%), Postives = 63/94 (67.02%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYPNPPRNAA-GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADG--RVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +PN    AA G A G  WKS+SEA KAPYV  AEK+  EY+KN++AYNKRLA+G    +EEESDK +S+VND+DED++
Sbjct:  101 AFFVFMEDFREKYKKEHPNNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYNKNIQAYNKRLAEGPNGADEEESDKSKSEVNDDDEDED 194

[Close]

BLAST of CF810676 vs. P. persica 1.0 peptide
Match: ppa011596m ()

HSP 1 Score: 91.2781 bits (225), Expect = 2.416e-19
Identity = 50/94 (53.19%), Postives = 63/94 (67.02%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYPNPPRNAA-GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADG--RVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +PN    AA G A G  WKS+SEA KAPYV  AEK+  EY+KN++AYNKRLA+G    +EEESDK +S+VND+DED++
Sbjct:  101 AFFVFMEDFREKYKKEHPNNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYNKNIQAYNKRLAEGPNGADEEESDKSKSEVNDDDEDED 194

[Close]

BLAST of CF810676 vs. P. persica 1.0 peptide
Match: ppa012972m ()

HSP 1 Score: 83.5741 bits (205), Expect = 5.038e-17
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYPNPPRNAA-GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADG--RVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +PN    AA G A G  WKS+S+A KAPYV  AEK+  EY+K ++AYNK +A+G    EEEESDK +S+VN+E+E+D+
Sbjct:   44 AFFVFMEDFREKYKKEHPNNKSVAAVGKAGGDKWKSLSDAEKAPYVAKAEKRKTEYNKTMQAYNKSIAEGGNGAEEEESDKSKSEVNNEEEEDD 137

[Close]

BLAST of CF810676 vs. P. persica 1.0 peptide
Match: ppa007518m ()

HSP 1 Score: 67.781 bits (164), Expect = 2.861e-12
Identity = 33/67 (49.25%), Postives = 47/67 (70.15%), Query Frame = 1

Query:  103 AAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVE-EEESDKLRSKVNDEDED 300
            A G A G  WKS+S+A KAPY   A K+ AEY K ++AYNK+   G  + +EES++ RS+VNDE+++
Sbjct:  269 AVGKAGGDKWKSLSDAEKAPYEAKAAKRKAEYEKQMKAYNKKQESGADDGDEESERSRSEVNDEEDE 335

[Close]

BLAST of CF810676 vs. P. persica 1.0 peptide
Match: ppa012331m ()

HSP 1 Score: 63.1586 bits (152), Expect = 7.046e-11
Identity = 35/67 (52.24%), Postives = 41/67 (61.19%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYPNPPRNAA-GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRL 231
            A F FM          +PN    AA G A G  WKS+SEA KAPYV  AEK+  EY+KN++AYNKRL
Sbjct:  101 AFFVFMEDFREKYKKEHPNNKSVAAVGKAGGDKWKSLSEAEKAPYVAKAEKRKVEYNKNIQAYNKRL 167

[Close]

BLAST of CF810676 vs. P. persica 1.0 peptide
Match: ppa012424m ()

HSP 1 Score: 59.6918 bits (143), Expect = 7.791e-10
Identity = 35/92 (38.04%), Postives = 48/92 (52.17%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYPNPPR-NAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            A F F+          +PN    +A G A G  WKSMS A KAPY   A K+ +EY K ++AYN +  D   EEEE  +    +  +DE++E
Sbjct:   63 AFFVFLEEFRTIYKQEHPNVKAVSAVGKAGGEKWKSMSHAEKAPYEAKAAKRKSEYEKLMKAYNNKEEDTDDEEEEVAERSKPIVKDDEEEE 154

[Close]

BLAST of CF810676 vs. P. persica 1.0 peptide
Match: ppa013451m ()

HSP 1 Score: 56.6102 bits (135), Expect = 6.595e-9
Identity = 31/67 (46.27%), Postives = 39/67 (58.21%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYPNPPRNAA-GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRL 231
            A F FM          +PN    AA G A G  WKS+S+A KAPYV  AEK+  EY+K ++AYNK +
Sbjct:   44 AFFVFMEDFREKYKKEHPNNKSVAAVGKAGGDKWKSLSDAEKAPYVAKAEKRKTEYNKTMQAYNKSI 110

[Close]

BLAST of CF810676 vs. P. persica 1.0 peptide
Match: ppa013567m ()

HSP 1 Score: 56.6102 bits (135), Expect = 6.595e-9
Identity = 31/67 (46.27%), Postives = 39/67 (58.21%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYPNPPRNAA-GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRL 231
            A F FM          +PN    AA G A G  WKS+S+A KAPYV  AEK+  EY+K ++AYNK +
Sbjct:   44 AFFVFMEDFREKYKKEHPNNKSVAAVGKAGGDKWKSLSDAEKAPYVAKAEKRKTEYNKTMQAYNKSI 110

[Close]

BLAST of CF810676 vs. TrEMBL
Match: Q4ZH67|Q4ZH67_CUCSA (High mobility group protein OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.411e-17
Identity = 49/94 (52.13%), Postives = 63/94 (67.02%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYPNPPRNAA-GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADG--RVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +PN    AA G A G  WKSMS+A KAPY+  AEK+  EY+K+++AYNKR+A+G    EEEESDK +S+VND+DEDD+
Sbjct:   44 AFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSDAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDD 137

[Close]

BLAST of CF810676 vs. TrEMBL
Match: D7U469|D7U469_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_44.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00026642001 PE=4 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.771e-16
Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYP-NPPRNAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADG--RVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +P N   +  G A G  WKS+SEA KAPYV  AEK+  EY+K+++AYNKR+A+G    EEEESDK RS+VND++ED++
Sbjct:   51 AFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKSMQAYNKRMAEGPTAAEEEESDKSRSEVNDDEEDED 144

[Close]

BLAST of CF810676 vs. TrEMBL
Match: B9R8P6|B9R8P6_RICCO (DNA-binding protein MNB1B, putative OS=Ricinus communis GN=RCOM_1601350 PE=4 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.871e-15
Identity = 48/92 (52.17%), Postives = 57/92 (61.96%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYP-NPPRNAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +P N    A G A G  WKSMSE+ KAP+V  AEK+  EY K L+AYNK  A+G  EEEES+K  S+VNDE+EDDE
Sbjct:   44 AFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDRWKSMSESEKAPFVAKAEKRKIEYEKKLKAYNKGQAEGPKEEEESEKSMSEVNDEEEDDE 135

[Close]

BLAST of CF810676 vs. TrEMBL
Match: O49948|O49948_SOLTU (High mobility group protein OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.192e-15
Identity = 44/92 (47.83%), Postives = 58/92 (63.04%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYPNPPRNAA-GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +PN    A  G A G  WK +S+  KAPY   AEK+ AEY KN++AYNK+LA G  ++EESDK +S+V+D+DEDD+
Sbjct:   42 AFFVFMEEFRKTYKEKHPNNKSVAVVGKAGGDKWKQLSDEEKAPYQAKAEKRKAEYQKNMDAYNKKLAAGDADDEESDKSKSEVHDDDEDDD 133

[Close]

BLAST of CF810676 vs. TrEMBL
Match: B9H672|B9H672_POPTR (High mobility group family OS=Populus trichocarpa GN=HMGB915 PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.192e-15
Identity = 48/92 (52.17%), Postives = 59/92 (64.13%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYPNPPRNAA-GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +PN    AA G A G  WKS+SEA KAPY   AEK+  EY+K++ AYNKRLA G   ++ESDK +S+VNDEDE+DE
Sbjct:   45 AFFVFMEDFRKQYKESHPNNKSVAAVGKAGGDKWKSLSEAEKAPYAAKAEKRKFEYNKDMAAYNKRLAGG--NDDESDKSKSEVNDEDEEDE 134

[Close]

BLAST of CF810676 vs. TrEMBL
Match: B9GQ02|B9GQ02_POPTR (High mobility group family OS=Populus trichocarpa GN=HMGB901 PE=4 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.192e-15
Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYP-NPPRNAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +P N    A G A G  WKS+S A KAPYV  A+K+  EY K ++AYNK  A+G  EEEES+K  S+VNDEDEDDE
Sbjct:   49 AFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKADKRKVEYEKKMKAYNKEQAEGPKEEEESEKSVSEVNDEDEDDE 140

[Close]

BLAST of CF810676 vs. TrEMBL
Match: A9PHM9|A9PHM9_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.192e-15
Identity = 47/92 (51.09%), Postives = 56/92 (60.87%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYP-NPPRNAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +P N    A G A G  WKS+S A KAPYV  A+K+  EY K ++AYNK  A+G  EEEES+K  S+VNDEDEDDE
Sbjct:   49 AFFVFMEEFREQYKKEHPKNKSVAAVGKAGGDKWKSLSAAEKAPYVAKADKRKVEYEKKMKAYNKEQAEGPKEEEESEKSVSEVNDEDEDDE 140

[Close]

BLAST of CF810676 vs. TrEMBL
Match: A9PD33|A9PD33_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.288e-15
Identity = 47/92 (51.09%), Postives = 59/92 (64.13%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYPNPPRNAA-GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +PN    AA G A G  WKS+SEA KAP+   AEK+  EY+K++ AYNKRLA G   ++ESDK +S+VNDEDE+DE
Sbjct:   45 AFFVFMEDFRKQYKESHPNNKSVAAVGKAGGDKWKSLSEAEKAPFAAKAEKRKFEYNKDMAAYNKRLAGG--NDDESDKSKSEVNDEDEEDE 134

[Close]

BLAST of CF810676 vs. TrEMBL
Match: Q9LM85|Q9LM85_ARATH (F2D10.18 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.213e-14
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1

Query:   31 PALFWFMLXXXXXXXXXYPNPPRNAA---GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            PA  +F+            NP   +    G AAG  WKS+S++ KAPYV  AEK+  EY KN++AYNK+L +G  E+EESDK  S+VNDED+ ++
Sbjct:  418 PASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEESDKSVSEVNDEDDAED 512

HSP 2 Score: 82.0333 bits (201), Expect = 2.069e-14
Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYP-NPPRNAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +P N    A G A G  WKS+S++ KAPYV  A+K+  EY KN++AYNK+L +G  E+EESDK  S+VNDED+ ++
Sbjct:  562 AFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSVSEVNDEDDAED 653

[Close]

BLAST of CF810676 vs. TrEMBL
Match: Q2V4M2|Q2V4M2_ARATH (Putative uncharacterized protein At1g20693.2 OS=Arabidopsis thaliana GN=At1g20693 PE=4 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.213e-14
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1

Query:   31 PALFWFMLXXXXXXXXXYPNPPRNAA---GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            PA  +F+            NP   +    G AAG  WKS+S++ KAPYV  AEK+  EY KN++AYNK+L +G  E+EESDK  S+VNDED+ ++
Sbjct:   41 PASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEESDKSVSEVNDEDDAED 135

[Close]

BLAST of CF810676 vs. Vitis vinifera peptide
Match: GSVIVT01026642001 (assembled CDS)

HSP 1 Score: 87.8113 bits (216), Expect = 2.298e-18
Identity = 47/94 (50.00%), Postives = 62/94 (65.96%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYP-NPPRNAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADG--RVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +P N   +  G A G  WKS+SEA KAPYV  AEK+  EY+K+++AYNKR+A+G    EEEESDK RS+VND++ED++
Sbjct:   51 AFFVFMEEFRKQYKEKHPANKSVSVVGKAGGDKWKSLSEAEKAPYVAKAEKRKTEYNKSMQAYNKRMAEGPTAAEEEESDKSRSEVNDDEEDED 144

[Close]

BLAST of CF810676 vs. Vitis vinifera peptide
Match: GSVIVT01013385001 (assembled CDS)

HSP 1 Score: 79.7221 bits (195), Expect = 6.258e-16
Identity = 44/95 (46.32%), Postives = 59/95 (62.11%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYP-NPPRNAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGR---VEEEESDKLRSKVNDEDEDDE 306
            A F FM          +P N   +  G A G  WKSMSEA KAPYV  AEK+  EY KN++AYNK+ A+G     EE+ES+K  S+VND+++D++
Sbjct:   50 AFFVFMEEFRKQYKEKHPSNKSVSVVGKAGGDKWKSMSEAEKAPYVAKAEKRKVEYEKNMKAYNKKQAEGTKVVEEEDESEKSLSEVNDQEDDED 144

[Close]

BLAST of CF810676 vs. Vitis vinifera peptide
Match: GSVIVT01033966001 (assembled CDS)

HSP 1 Score: 67.781 bits (164), Expect = 2.461e-12
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 1

Query:  100 NAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVE-EEESDKLRSKVNDEDEDD 303
            +A G A G  WKS+SEA KAPY   A KK AEY K + AYNK+      + +EESD+ +S+VND+D+++
Sbjct:   85 SAVGKAGGERWKSLSEAEKAPYEAKAAKKKAEYEKIMNAYNKKQESTADDGDEESDRSKSEVNDQDDEE 153

[Close]

BLAST of CF810676 vs. TAIR peptide
Match: AT1G20693.3 (| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mobility group B2 | chr1:7177282-7178487 FORWARD LENGTH=143)

HSP 1 Score: 82.8037 bits (203), Expect = 1.046e-16
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1

Query:   31 PALFWFMLXXXXXXXXXYPNPPRNAA---GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            PA  +F+            NP   +    G AAG  WKS+S++ KAPYV  AEK+  EY KN++AYNK+L +G  E+EESDK  S+VNDED+ ++
Sbjct:   41 PASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEESDKSVSEVNDEDDAED 135

[Close]

BLAST of CF810676 vs. TAIR peptide
Match: AT1G20693.2 (| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mobility group B2 | chr1:7177282-7178487 FORWARD LENGTH=142)

HSP 1 Score: 82.8037 bits (203), Expect = 1.046e-16
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1

Query:   31 PALFWFMLXXXXXXXXXYPNPPRNAA---GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            PA  +F+            NP   +    G AAG  WKS+S++ KAPYV  AEK+  EY KN++AYNK+L +G  E+EESDK  S+VNDED+ ++
Sbjct:   41 PASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEESDKSVSEVNDEDDAED 135

[Close]

BLAST of CF810676 vs. TAIR peptide
Match: AT1G20693.1 (| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 | high mobility group B2 | chr1:7177282-7178487 FORWARD LENGTH=144)

HSP 1 Score: 82.8037 bits (203), Expect = 1.046e-16
Identity = 43/95 (45.26%), Postives = 59/95 (62.11%), Query Frame = 1

Query:   31 PALFWFMLXXXXXXXXXYPNPPRNAA---GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            PA  +F+            NP   +    G AAG  WKS+S++ KAPYV  AEK+  EY KN++AYNK+L +G  E+EESDK  S+VNDED+ ++
Sbjct:   41 PASAFFVFMEDFRETFKKENPKNKSVATVGKAAGDKWKSLSDSEKAPYVAKAEKRKVEYEKNIKAYNKKLEEGPKEDEESDKSVSEVNDEDDAED 135

[Close]

BLAST of CF810676 vs. TAIR peptide
Match: AT1G20696.3 (| Symbols: HMGB3, NFD3, NFD03 | high mobility group B3 | chr1:7179825-7181170 FORWARD LENGTH=140)

HSP 1 Score: 82.0333 bits (201), Expect = 1.784e-16
Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYP-NPPRNAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +P N    A G A G  WKS+S++ KAPYV  A+K+  EY KN++AYNK+L +G  E+EESDK  S+VNDED+ ++
Sbjct:   41 AFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSVSEVNDEDDAED 132

[Close]

BLAST of CF810676 vs. TAIR peptide
Match: AT1G20696.1 (| Symbols: HMGB3, NFD3, NFD03 | high mobility group B3 | chr1:7179825-7181174 FORWARD LENGTH=141)

HSP 1 Score: 82.0333 bits (201), Expect = 1.784e-16
Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = 1

Query:   34 ALFWFMLXXXXXXXXXYP-NPPRNAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDEDDE 306
            A F FM          +P N    A G A G  WKS+S++ KAPYV  A+K+  EY KN++AYNK+L +G  E+EESDK  S+VNDED+ ++
Sbjct:   41 AFFVFMEDFRVTYKEEHPKNKSVAAVGKAGGEKWKSLSDSEKAPYVAKADKRKVEYEKNMKAYNKKLEEGPKEDEESDKSVSEVNDEDDAED 132

[Close]

BLAST of CF810676 vs. TAIR peptide
Match: AT3G51880.4 (| Symbols: HMGB1 | high mobility group B1 | chr3:19247241-19248491 REVERSE LENGTH=161)

HSP 1 Score: 75.485 bits (184), Expect = 1.670e-14
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 1

Query:  100 NAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDE 297
            +A G A G  WKSMS+A KAPY E A K+ AEY K ++AYNK L +G    +ES+K RS++NDEDE
Sbjct:   82 SAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEG---SDESEKSRSEINDEDE 144

[Close]

BLAST of CF810676 vs. TAIR peptide
Match: AT3G51880.3 (| Symbols: HMGB1, NFD1 | high mobility group B1 | chr3:19247241-19248491 REVERSE LENGTH=178)

HSP 1 Score: 75.485 bits (184), Expect = 1.670e-14
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 1

Query:  100 NAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDE 297
            +A G A G  WKSMS+A KAPY E A K+ AEY K ++AYNK L +G    +ES+K RS++NDEDE
Sbjct:   82 SAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEG---SDESEKSRSEINDEDE 144

[Close]

BLAST of CF810676 vs. TAIR peptide
Match: AT3G51880.2 (| Symbols: HMGB1, NFD1 | high mobility group B1 | chr3:19247241-19248491 REVERSE LENGTH=185)

HSP 1 Score: 75.485 bits (184), Expect = 1.670e-14
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 1

Query:  100 NAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDE 297
            +A G A G  WKSMS+A KAPY E A K+ AEY K ++AYNK L +G    +ES+K RS++NDEDE
Sbjct:   82 SAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEG---SDESEKSRSEINDEDE 144

[Close]

BLAST of CF810676 vs. TAIR peptide
Match: AT3G51880.1 (| Symbols: HMGB1, NFD1 | high mobility group B1 | chr3:19247241-19248491 REVERSE LENGTH=178)

HSP 1 Score: 75.485 bits (184), Expect = 1.670e-14
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 1

Query:  100 NAAGHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADGRVEEEESDKLRSKVNDEDE 297
            +A G A G  WKSMS+A KAPY E A K+ AEY K ++AYNK L +G    +ES+K RS++NDEDE
Sbjct:   82 SAVGKAGGQKWKSMSQAEKAPYEEKAAKRKAEYEKQMDAYNKNLEEG---SDESEKSRSEINDEDE 144

[Close]

BLAST of CF810676 vs. TAIR peptide
Match: AT2G17560.3 (| Symbols: HMGB4, NFD4, NFD04 | high mobility group B4 | chr2:7642486-7643468 REVERSE LENGTH=134)

HSP 1 Score: 65.4698 bits (158), Expect = 1.728e-11
Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 1

Query:  109 GHAAGVAWKSMSEAAKAPYVEIAEKKMAEYHKNLEAYNKRLADG-RVEEEESDKLRSKVNDEDEDDE 306
            G AAG  WK+M++  KAPYV  AE +  EY KN++ YN +LA G   EE++SDK +S+V++ + +D+
Sbjct:   67 GKAAGARWKAMTDEDKAPYVAKAESRKTEYIKNVQQYNLKLASGTNREEDDSDKSKSEVDEAEAEDD 133

The following BLAST results are available for this feature:

BLAST of CF810676 vs. DB:swissprot:display
BLAST of CF810676 vs. Populus trichocarpa peptide v2.0
BLAST of CF810676 vs. P. persica 1.0 peptide
BLAST of CF810676 vs. TrEMBL
BLAST of CF810676 vs. Vitis vinifera peptide
BLAST of CF810676 vs. TAIR peptide

BLAST of CF810676 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 5


Match Name	E-value	Identity	Description
HMGL_IPONI	1.889e-16	48.91	HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1	[more]
HMGL_SOYBN	3.222e-16	48.94	HMG1/2-like protein OS=Glycine max PE=2 SV=1	[more]
HMGL_VICFA	1.599e-15	51.09	HMG1/2-like protein OS=Vicia faba PE=2 SV=1	[more]
HMGL_WHEAT	5.323e-11	47.50	HMG1/2-like protein OS=Triticum aestivum PE=2 SV=1	[more]
MNB1B_MAIZE	9.080e-11	49.35	DNA-binding protein MNB1B OS=Zea mays GN=MNB1B PE=...	[more]

BLAST of CF810676 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 7


Match Name	E-value	Identity
POPTR_0005s27390.1	1.857e-17	48.96	[more]
POPTR_0002s01000.2	3.168e-17	51.09	[more]
POPTR_0002s01000.1	3.168e-17	51.09	[more]
POPTR_0005s10440.1	3.168e-17	52.17	[more]
POPTR_0010s19720.1	2.058e-8	36.45	[more]
POPTR_0008s06730.2	7.822e-8	41.33	[more]
POPTR_0008s06730.1	7.822e-8	41.33	[more]

BLAST of CF810676 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 10


Match Name	E-value	Identity
ppa012962m	2.416e-19	53.19	[more]
ppa012955m	2.416e-19	53.19	[more]
ppa011662m	2.416e-19	53.19	[more]
ppa011596m	2.416e-19	53.19	[more]
ppa012972m	5.038e-17	48.94	[more]
ppa007518m	2.861e-12	49.25	[more]
ppa012331m	7.046e-11	52.24	[more]
ppa012424m	7.791e-10	38.04	[more]
ppa013451m	6.595e-9	46.27	[more]
ppa013567m	6.595e-9	46.27	[more]

BLAST of CF810676 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
Q4ZH67\|Q4ZH67_CUCSA	3.411e-17	52.13	High mobility group protein OS=Cucumis sativus PE=...	[more]
D7U469\|D7U469_VITVI	3.771e-16	50.00	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9R8P6\|B9R8P6_RICCO	1.871e-15	52.17	DNA-binding protein MNB1B, putative OS=Ricinus com...	[more]
O49948\|O49948_SOLTU	3.192e-15	47.83	High mobility group protein OS=Solanum tuberosum P...	[more]
B9H672\|B9H672_POPTR	3.192e-15	52.17	High mobility group family OS=Populus trichocarpa ...	[more]
B9GQ02\|B9GQ02_POPTR	3.192e-15	51.09	High mobility group family OS=Populus trichocarpa ...	[more]
A9PHM9\|A9PHM9_POPTR	3.192e-15	51.09	Putative uncharacterized protein OS=Populus tricho...	[more]
A9PD33\|A9PD33_POPTR	9.288e-15	51.09	Putative uncharacterized protein OS=Populus tricho...	[more]
Q9LM85\|Q9LM85_ARATH	1.213e-14	45.26	F2D10.18 OS=Arabidopsis thaliana PE=4 SV=1	[more]
Q2V4M2\|Q2V4M2_ARATH	1.213e-14	45.26	Putative uncharacterized protein At1g20693.2 OS=Ar...	[more]

BLAST of CF810676 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 3


Match Name	E-value	Identity	Description
GSVIVT01026642001	2.298e-18	50.00	assembled CDS	[more]
GSVIVT01013385001	6.258e-16	46.32	assembled CDS	[more]
GSVIVT01033966001	2.461e-12	49.28	assembled CDS	[more]

BLAST of CF810676 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT1G20693.3	1.046e-16	45.26	\| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 \| high m...	[more]
AT1G20693.2	1.046e-16	45.26	\| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 \| high m...	[more]
AT1G20693.1	1.046e-16	45.26	\| Symbols: HMGB2, HMG BETA 1, NFD2, NFD02 \| high m...	[more]
AT1G20696.3	1.784e-16	46.74	\| Symbols: HMGB3, NFD3, NFD03 \| high mobility grou...	[more]
AT1G20696.1	1.784e-16	46.74	\| Symbols: HMGB3, NFD3, NFD03 \| high mobility grou...	[more]
AT3G51880.4	1.670e-14	56.06	\| Symbols: HMGB1 \| high mobility group B1 \| chr3:1...	[more]
AT3G51880.3	1.670e-14	56.06	\| Symbols: HMGB1, NFD1 \| high mobility group B1 \| ...	[more]
AT3G51880.2	1.670e-14	56.06	\| Symbols: HMGB1, NFD1 \| high mobility group B1 \| ...	[more]
AT3G51880.1	1.670e-14	56.06	\| Symbols: HMGB1, NFD1 \| high mobility group B1 \| ...	[more]
AT2G17560.3	1.728e-11	46.27	\| Symbols: HMGB4, NFD4, NFD04 \| high mobility grou...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 60..72 score: NAcoord: 112..126 score: NAcoord: 138..146 score
None	No IPR available	SEG	seg	seg	coord: 45..57 score
None	No IPR available	SEG	seg	seg	coord: 32..40 score
None	No IPR available	PANTHER	PTHR13711	SWI/SNF-RELATED CHROMATIN BINDING PROTEIN	coord: 2..89 score: 3.7
None	No IPR available	SEG	seg	seg	coord: 2..9 score: NAcoord: 19..27 score
IPR000910	High mobility group, HMG1/HMG2	GENE3D	1.10.30.10	no description	coord: 2..84 score: 3.2
IPR000910	High mobility group, HMG1/HMG2	PFAM	PF00505	HMG_box	coord: 6..74 score: 1.7
IPR000910	High mobility group, HMG1/HMG2	SMART	SM00398	no description	coord: 5..75 score: 1.6
IPR000910	High mobility group, HMG1/HMG2	PROFILE	PS50118	HMG_BOX_2	coord: 6..74 score: 14
IPR009071	High mobility group, superfamily	SUPERFAMILY	47095	HMG-box	coord: 3..87 score: 6.7

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF810676 ID=CF810676; Name=CF810676; organism=Vaccinium corymbosum; type=EST; length=494bp
GAGAACCCTAACAAGCCTAAGAAACCTTTGCCTGCCCTCTTTTGGTTCAT
GCTGGAATTCAAAAAGAAATTCAAAGAGAAGTATCCTAACCCGCCTCGTA
ATGCTGCTGGTCATGCTGCTGGAGTGGCGTGGAAATCGATGTCTGAAGCT
GCAAAAGCACCCTATGTGGAAATAGCAGAGAAAAAGATGGCCGAATACCA
CAAAAACCTCGAGGCTTACAATAAGAGATTGGCTGATGGAAGGGTTGAGG
AAGAAGAATCTGACAAGTTGAGGTCCAAGGTGAATGATGAGGATGAGGAC
GACGAGAGAATGGTGGGCCTTTACGCCCCGTTTGGCGACCGGAGATGATT
TTGGGTGGATTTGTAATGAGGGTGGATTTGAAGGTGGATTTGTAACGAGG
GTGGATTTGTAATGAGGGTGGCCCCACCTCATAAGAAGGGTGGATTTGTT
AATGAGGTGTTTGGATGGTATTTTGANAAGGGGGATTTGGAAGG

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR000910	High mobility group, HMG1/HMG2
IPR009071	HMG_box_dom
noIPR	unintegrated