CF810962 | GDV

EST Overview


Name	CF810962
Unique Name	CF810962
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	550

Libraries


Library Name	Type
LIBEST_014530 cDNA cold acclimated Bluecrop library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of CF810962 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0014s12400.1 ()

HSP 1 Score: 52.373 bits (124), Expect = 2.144e-7
Identity = 34/85 (40.00%), Postives = 40/85 (47.06%), Query Frame = 1

Query:    7 NPYKNPRIQGLRRQMTNRRLDSRRAIDSCTFQLHSWRPFHLXXXXXXXXXXXXXXXXXXXXXXXNGAHSKRPCLSDRATSFSIDI 261
            NP KN   Q     M++   +SR +IDSCT QLHSWRPF                         +    KRPCLSDRATSF  +I
Sbjct:    5 NPNKNQEDQSKSMVMSH---NSRHSIDSCTLQLHSWRPF-----------LDSDPPTNSKPYASSRTLPKRPCLSDRATSFPSNI 75

[Close]

BLAST of CF810962 vs. P. persica 1.0 peptide
Match: ppa009673m ()

HSP 1 Score: 65.0846 bits (157), Expect = 2.271e-11
Identity = 34/76 (44.74%), Postives = 41/76 (53.95%), Query Frame = 1

Query:   49 MTNRRLDSRRAIDSCTFQLHSWRPFHLXXXXXXXXXXXXXXXXXXXXXXXNGA------HSKRPCLSDRATSFSID 258
            M+++ L+ R  IDSC FQLHSWRPFHL                       N +      H+KRPCLS+RATSFSID
Sbjct:    1 MSHKALEHRHPIDSCAFQLHSWRPFHLHQQTTPTSKTLDSDPSLPNPKPYNSSSNGLVVHTKRPCLSNRATSFSID 76

[Close]

BLAST of CF810962 vs. TrEMBL
Match: B9SAR3|B9SAR3_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1178160 PE=4 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.212e-9
Identity = 35/70 (50.00%), Postives = 40/70 (57.14%), Query Frame = 1

Query:   49 MTNRRLDSRRAIDSCTFQLHSWRPFHLXXXXXXXXXXXXXXXXXXXXXXXNGAHSKRPCLSDRATSFSID 258
            M++R LDSR +IDSCTFQLHSWRPFHL                         + +KRPCLSDR TSF ID
Sbjct:    1 MSHRSLDSRHSIDSCTFQLHSWRPFHLQTLDSDPPKPY-------------SSTTKRPCLSDRTTSFPID 57

The following BLAST results are available for this feature:

BLAST of CF810962 vs. Populus trichocarpa peptide v2.0
BLAST of CF810962 vs. P. persica 1.0 peptide
BLAST of CF810962 vs. TrEMBL

BLAST of CF810962 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
POPTR_0014s12400.1	2.144e-7	40.00		[more]

BLAST of CF810962 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
ppa009673m	2.271e-11	44.74		[more]

BLAST of CF810962 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 1


Match Name	E-value	Identity	Description
B9SAR3\|B9SAR3_RICCO	1.212e-9	50.00	Putative uncharacterized protein OS=Ricinus commun...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 6..26 score: NAcoord: 33..46 score: NAcoord: 69..85 score
None	No IPR available	SEG	seg	seg	coord: 44..66 score: NAcoord: 88..127 score: NAcoord: 145..161 score: NAcoord: 168..183 score
None	No IPR available	SEG	seg	seg	coord: 12..31 score: NAcoord: 46..57 score
None	No IPR available	SEG	seg	seg	coord: 40..51 score
None	No IPR available	SEG	seg	seg	coord: 61..80 score
None	No IPR available	SEG	seg	seg	coord: 69..74 score
None	No IPR available	SEG	seg	seg	coord: 38..65 score
None	No IPR available	SEG	seg	seg	coord: 1..11 score: NAcoord: 32..57 score: NAcoord: 77..91 score
None	No IPR available	SEG	seg	seg	coord: 1..12 score: NAcoord: 24..37 score

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF810962 ID=CF810962; Name=CF810962; organism=Vaccinium corymbosum; type=EST; length=550bp
CTTCGAAACCCCTACAAAAATCCCAGAATTCAGGGCTTGCGTCGACAAAT
GACCAACAGAAGACTAGATTCCCGTCGCGCTATAGACTCGTGCACATTCC
AGCTCCACAGTTGGAGACCCTTTCACCTCCCAACCTCTCCCCACCACCAC
CACTCTGATTCCAAGACCACCACCACTCCAAAACCCCAAGACTCCACTAA
CGGGGCCCACAGCAAGAGACCCTGCCTCTCCGATCGCGCCACCTCTTTCT
CCATCGACATTTCCAGGCTCAGCTTGCTCGACGACGACCGATCTGTATCC
TCTGGTCTCCGATTAATCGACCGCAAGAGGCGGAGGCGGCGGGGGTCGAG
ATCGGTCTCGGGTCGGAGCTGCTCGGTTGGGGCTTACGGCACCTGTTCGG
ACATCCCGGTGGCGGTGGGCGGGACGGATTCGAGCGGGGAGTTGTTTTTG
AACGGCGGTGGGGAGGGGAATTGGGGGTCGGNATGTGAGCGAGGCGGCCG
CGGTTGGCAGGGGTTTGAGGAAAAAAAGGANGGTGGTGGTGGGGGNTGGG

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
noIPR	unintegrated