CF811051 | GDV

EST Overview


Name	CF811051
Unique Name	CF811051
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	664

Libraries


Library Name	Type
LIBEST_014530 cDNA cold acclimated Bluecrop library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide	2011-02-10
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of CF811051 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0018s08370.1 ()

HSP 1 Score: 154.836 bits (390), Expect = 4.292e-38
Identity = 71/85 (83.53%), Postives = 83/85 (97.65%), Query Frame = -2

Query:  346 RIIDLHGLHVSEAIHVLKRELALLRSTARSVEQRLQVYICVGTGHHTRGSRTPSRLPIAVQRYLLEEEGLDYSEPQPGLLRVLLY 600
            R+IDLHGLHV+EAIHVLK EL++LRSTAR+ +QRLQVYICVGTGHHTRG+RTP+RLP+AVQRYLLEEEGLDY+EPQPGLLRV++Y
Sbjct:  499 RMIDLHGLHVTEAIHVLKHELSILRSTARAADQRLQVYICVGTGHHTRGARTPARLPVAVQRYLLEEEGLDYTEPQPGLLRVVMY 583

[Close]

BLAST of CF811051 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0006s23550.1 ()

HSP 1 Score: 150.984 bits (380), Expect = 6.198e-37
Identity = 74/104 (71.15%), Postives = 87/104 (83.65%), Query Frame = -2

Query:  346 RNPVSXXXXXXXXXXXXXERIIDLHGLHVSEAIHVLKRELALLRSTARSVEQRLQVYICVGTGHHTRGSRTPSRLPIAVQRYLLEEEGLDYSEPQPGLLRVLLY 657
            RNPVS              ++IDLHGLHV+EAIHVLK EL++LRSTA++ +QRLQVYICVGTGHHTRGSRTP+RLP+AVQRYLLEEEGLDY+EP PGLLRV++Y
Sbjct:  481 RNPVSLEMQGTGRGHE---QMIDLHGLHVTEAIHVLKHELSVLRSTAQAADQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLLEEEGLDYTEPHPGLLRVVIY 581

[Close]

BLAST of CF811051 vs. TrEMBL
Match: B9IKF3|B9IKF3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_578018 PE=4 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 5.363e-36
Identity = 71/85 (83.53%), Postives = 83/85 (97.65%), Query Frame = -2

Query:  346 RIIDLHGLHVSEAIHVLKRELALLRSTARSVEQRLQVYICVGTGHHTRGSRTPSRLPIAVQRYLLEEEGLDYSEPQPGLLRVLLY 600
            R+IDLHGLHV+EAIHVLK EL++LRSTAR+ +QRLQVYICVGTGHHTRG+RTP+RLP+AVQRYLLEEEGLDY+EPQPGLLRV++Y
Sbjct:  499 RMIDLHGLHVTEAIHVLKHELSILRSTARAADQRLQVYICVGTGHHTRGARTPARLPVAVQRYLLEEEGLDYTEPQPGLLRVVMY 583

[Close]

BLAST of CF811051 vs. TrEMBL
Match: D7STY8|D7STY8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00035490001 PE=4 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 9.148e-36
Identity = 78/104 (75.00%), Postives = 86/104 (82.69%), Query Frame = -2

Query:  346 RNPVSXXXXXXXXXXXXXERIIDLHGLHVSEAIHVLKRELALLRSTARSVEQRLQVYICVGTGHHTRGSRTPSRLPIAVQRYLLEEEGLDYSEPQPGLLRVLLY 657
            RNPVS              R+IDLHGLHVSEAIHVLK EL +LRSTARS +QRLQVYICVGTGHHTRGSRTP+RLP+AVQRYLLEEEGLDY+EPQ GLLRV++Y
Sbjct:  425 RNPVSPELQGNARGE----RMIDLHGLHVSEAIHVLKHELNVLRSTARSADQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLLEEEGLDYTEPQAGLLRVVIY 524

[Close]

BLAST of CF811051 vs. TrEMBL
Match: B9HCQ2|B9HCQ2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_819443 PE=4 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.744e-35
Identity = 74/104 (71.15%), Postives = 87/104 (83.65%), Query Frame = -2

Query:  346 RNPVSXXXXXXXXXXXXXERIIDLHGLHVSEAIHVLKRELALLRSTARSVEQRLQVYICVGTGHHTRGSRTPSRLPIAVQRYLLEEEGLDYSEPQPGLLRVLLY 657
            RNPVS              ++IDLHGLHV+EAIHVLK EL++LRSTA++ +QRLQVYICVGTGHHTRGSRTP+RLP+AVQRYLLEEEGLDY+EP PGLLRV++Y
Sbjct:  481 RNPVSLEMQGTGRGHE---QMIDLHGLHVTEAIHVLKHELSVLRSTAQAADQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLLEEEGLDYTEPHPGLLRVVIY 581

[Close]

BLAST of CF811051 vs. TrEMBL
Match: A9PJ21|A9PJ21_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.744e-35
Identity = 74/104 (71.15%), Postives = 87/104 (83.65%), Query Frame = -2

Query:  346 RNPVSXXXXXXXXXXXXXERIIDLHGLHVSEAIHVLKRELALLRSTARSVEQRLQVYICVGTGHHTRGSRTPSRLPIAVQRYLLEEEGLDYSEPQPGLLRVLLY 657
            RNPVS              ++IDLHGLHV+EAIHVLK EL++LRSTA++ +QRLQVYICVGTGHHTRGSRTP+RLP+AVQRYLLEEEGLDY+EP PGLLRV++Y
Sbjct:  481 RNPVSLEMQGTGRGHE---QMIDLHGLHVTEAIHVLKHELSVLRSTAQAADQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLLEEEGLDYTEPHPGLLRVVIY 581

[Close]

BLAST of CF811051 vs. TrEMBL
Match: B9RQZ0|B9RQZ0_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0707840 PE=4 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.321e-34
Identity = 71/81 (87.65%), Postives = 79/81 (97.53%), Query Frame = -2

Query:  358 RIIDLHGLHVSEAIHVLKRELALLRSTARSVEQRLQVYICVGTGHHTRGSRTPSRLPIAVQRYLLEEEGLDYSEPQPGLLR 600
            R+IDLHGLHVSEAIHVLK EL++LRSTAR+ +QRLQVYICVGTGHHTRGSRTP+RLPIAVQ+YLLEEEGLDY+EPQPGLLR
Sbjct:  500 RMIDLHGLHVSEAIHVLKHELSVLRSTARAADQRLQVYICVGTGHHTRGSRTPARLPIAVQQYLLEEEGLDYTEPQPGLLR 580

[Close]

BLAST of CF811051 vs. TrEMBL
Match: O64843|O64843_ARATH (At2g26280 OS=Arabidopsis thaliana GN=At2g26280 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.725e-34
Identity = 69/85 (81.18%), Postives = 81/85 (95.29%), Query Frame = -2

Query:  346 RIIDLHGLHVSEAIHVLKRELALLRSTARSVEQRLQVYICVGTGHHTRGSRTPSRLPIAVQRYLLEEEGLDYSEPQPGLLRVLLY 600
            R+IDLHGLHVSEA+ VLK EL++LRSTAR+ ++RLQ+YICVGTGHHTRGSRTP+RLP+AVQRYLLEEEGLDYSEPQ GLLRV++Y
Sbjct:  483 RMIDLHGLHVSEALQVLKHELSVLRSTARATQERLQIYICVGTGHHTRGSRTPARLPVAVQRYLLEEEGLDYSEPQAGLLRVIIY 567

[Close]

BLAST of CF811051 vs. TrEMBL
Match: D7LCV9|D7LCV9_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_481487 PE=4 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.843e-34
Identity = 69/85 (81.18%), Postives = 81/85 (95.29%), Query Frame = -2

Query:  346 RIIDLHGLHVSEAIHVLKRELALLRSTARSVEQRLQVYICVGTGHHTRGSRTPSRLPIAVQRYLLEEEGLDYSEPQPGLLRVLLY 600
            R+IDLHGLHVSEA+ VLK EL++LRSTAR+ ++RLQV+ICVGTGHHTRGSRTP+RLP+AVQRYLLEEEGLDYSEPQ GLLRV++Y
Sbjct:  486 RMIDLHGLHVSEALQVLKHELSVLRSTARATQERLQVFICVGTGHHTRGSRTPARLPVAVQRYLLEEEGLDYSEPQAGLLRVIIY 570

[Close]

BLAST of CF811051 vs. TrEMBL
Match: Q0WQS0|Q0WQS0_ARATH (Putative uncharacterized protein At2g26280 OS=Arabidopsis thaliana GN=At2g26280 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.020e-34
Identity = 68/85 (80.00%), Postives = 81/85 (95.29%), Query Frame = -2

Query:  346 RIIDLHGLHVSEAIHVLKRELALLRSTARSVEQRLQVYICVGTGHHTRGSRTPSRLPIAVQRYLLEEEGLDYSEPQPGLLRVLLY 600
            R+IDLHGLHVSEA+ VL+ EL++LRSTAR+ ++RLQ+YICVGTGHHTRGSRTP+RLP+AVQRYLLEEEGLDYSEPQ GLLRV++Y
Sbjct:  483 RMIDLHGLHVSEALQVLEHELSVLRSTARATQERLQIYICVGTGHHTRGSRTPARLPVAVQRYLLEEEGLDYSEPQAGLLRVIIY 567

[Close]

BLAST of CF811051 vs. TrEMBL
Match: A9SAL3|A9SAL3_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_163833 PE=4 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.014e-26
Identity = 59/84 (70.24%), Postives = 70/84 (83.33%), Query Frame = -2

Query:  349 RIIDLHGLHVSEAIHVLKRELALLRSTARSVEQRLQVYICVGTGHHTRGSRTPSRLPIAVQRYLLEEEGLDYSEPQPGLLRVLL 600
            R+IDLHGLHVSEAI  LKRE+A LR   R+  QR  V+ICVGTGHHT+GSRTPSRLP AVQ+YLLEEE L ++EPQ G+LR++L
Sbjct:  584 RLIDLHGLHVSEAIPFLKREIAQLRYNTRNTRQRETVFICVGTGHHTKGSRTPSRLPAAVQKYLLEEEHLQFTEPQAGMLRIIL 667

[Close]

BLAST of CF811051 vs. TrEMBL
Match: A9T3I4|A9T3I4_PHYPA (Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_167867 PE=4 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.571e-26
Identity = 56/84 (66.67%), Postives = 70/84 (83.33%), Query Frame = -2

Query:  349 RIIDLHGLHVSEAIHVLKRELALLRSTARSVEQRLQVYICVGTGHHTRGSRTPSRLPIAVQRYLLEEEGLDYSEPQPGLLRVLL 600
            R+IDLHGLHV EAI +LKRE+A L+   R+  QR  V+ICVGTGHHT+GSRTPSRLP AVQ+YLLEEE L ++EPQ G+LR+++
Sbjct:  508 RLIDLHGLHVGEAIPLLKREIAQLKYNVRNTRQRETVFICVGTGHHTKGSRTPSRLPAAVQKYLLEEEHLQFTEPQAGMLRIII 591

[Close]

BLAST of CF811051 vs. Vitis vinifera peptide
Match: GSVIVT01035490001 (assembled CDS)

HSP 1 Score: 154.066 bits (388), Expect = 4.418e-38
Identity = 78/104 (75.00%), Postives = 86/104 (82.69%), Query Frame = -2

Query:  346 RNPVSXXXXXXXXXXXXXERIIDLHGLHVSEAIHVLKRELALLRSTARSVEQRLQVYICVGTGHHTRGSRTPSRLPIAVQRYLLEEEGLDYSEPQPGLLRVLLY 657
            RNPVS              R+IDLHGLHVSEAIHVLK EL +LRSTARS +QRLQVYICVGTGHHTRGSRTP+RLP+AVQRYLLEEEGLDY+EPQ GLLRV++Y
Sbjct:  425 RNPVSPELQGNARGE----RMIDLHGLHVSEAIHVLKHELNVLRSTARSADQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLLEEEGLDYTEPQAGLLRVVIY 524

[Close]

BLAST of CF811051 vs. TAIR peptide
Match: AT2G26280.1 (| Symbols: CID7 | CTC-interacting domain 7 | chr2:11188143-11190579 REVERSE LENGTH=567)

HSP 1 Score: 149.828 bits (377), Expect = 1.215e-36
Identity = 69/85 (81.18%), Postives = 81/85 (95.29%), Query Frame = -2

Query:  346 RIIDLHGLHVSEAIHVLKRELALLRSTARSVEQRLQVYICVGTGHHTRGSRTPSRLPIAVQRYLLEEEGLDYSEPQPGLLRVLLY 600
            R+IDLHGLHVSEA+ VLK EL++LRSTAR+ ++RLQ+YICVGTGHHTRGSRTP+RLP+AVQRYLLEEEGLDYSEPQ GLLRV++Y
Sbjct:  483 RMIDLHGLHVSEALQVLKHELSVLRSTARATQERLQIYICVGTGHHTRGSRTPARLPVAVQRYLLEEEGLDYSEPQAGLLRVIIY 567

The following BLAST results are available for this feature:

BLAST of CF811051 vs. Populus trichocarpa peptide v2.0
BLAST of CF811051 vs. TrEMBL
BLAST of CF811051 vs. Vitis vinifera peptide
BLAST of CF811051 vs. TAIR peptide

BLAST of CF811051 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
POPTR_0018s08370.1	4.292e-38	83.53		[more]
POPTR_0006s23550.1	6.198e-37	71.15		[more]

BLAST of CF811051 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
B9IKF3\|B9IKF3_POPTR	5.363e-36	83.53	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7STY8\|D7STY8_VITVI	9.148e-36	75.00	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9HCQ2\|B9HCQ2_POPTR	7.744e-35	71.15	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
A9PJ21\|A9PJ21_9ROSI	7.744e-35	71.15	Putative uncharacterized protein OS=Populus tricho...	[more]
B9RQZ0\|B9RQZ0_RICCO	1.321e-34	87.65	Pentatricopeptide repeat-containing protein, putat...	[more]
O64843\|O64843_ARATH	1.725e-34	81.18	At2g26280 OS=Arabidopsis thaliana GN=At2g26280 PE=...	[more]
D7LCV9\|D7LCV9_ARALY	3.843e-34	81.18	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
Q0WQS0\|Q0WQS0_ARATH	5.020e-34	80.00	Putative uncharacterized protein At2g26280 OS=Arab...	[more]
A9SAL3\|A9SAL3_PHYPA	1.014e-26	70.24	Predicted protein OS=Physcomitrella patens subsp. ...	[more]
A9T3I4\|A9T3I4_PHYPA	6.571e-26	66.67	Predicted protein OS=Physcomitrella patens subsp. ...	[more]

BLAST of CF811051 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1


Match Name	E-value	Identity	Description
GSVIVT01035490001	4.418e-38	75.00	assembled CDS	[more]

BLAST of CF811051 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT2G26280.1	1.215e-36	81.18	\| Symbols: CID7 \| CTC-interacting domain 7 \| chr2:...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 5..17 score
None	No IPR available	SEG	seg	seg	coord: 29..43 score
None	No IPR available	SEG	seg	seg	coord: 35..60 score
None	No IPR available	SEG	seg	seg	coord: 8..21 score
IPR002625	Smr protein/MutS2 C-terminal	PFAM	PF01713	Smr	coord: 24..104 score: 3.4
IPR002625	Smr protein/MutS2 C-terminal	SMART	SM00463	no description	coord: 21..106 score: 3.2
IPR002625	Smr protein/MutS2 C-terminal	PROFILE	PS50828	SMR	coord: 24..106 score: 19

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF811051 ID=CF811051; Name=CF811051; organism=Vaccinium corymbosum; type=EST; length=664bp
GAGACAGTAAATGCGTTAAAATTTTACTATTAAGTAAATCAATGCTAACA
GTTACATCTGAATTTTAAAAATAAACAGTAAAAAAAAGAACAAGAACAAA
GAATTGTTACAAAGTTACAAAAAAAGGTCCCCACCTTCCCCCGTAGAGAC
CCTGACTCGTTACCGAACATATACGAAGCGACTTAACCTAATGATACATT
TCTGATTCTTTTGCTTTTTCGCTTTGTAATTTTCATTTGCTTTTCTTCTT
TCCTTTTTGCAGAAAACTGGACTACTTCCCCTATACCAACACAAGTGACT
GATTCTTTGGCCAAAACCCTCCTCGTAAACCTACGTTGACTATCAATATA
ACAGAACCCTTAGTAGCCCAGGCTGTGGTTCTGAGTAGTCAAGGCCCTCC
TCCTCAAGCAAATAGCGCTGGACCGCAATTGGAAGTCTGGAGGGAGTGCG
AGAACCCCTAGTATGGTGGCCAGTTCCAACACATATATAAACCTGTAGCC
GCTGCTCCACTGATCGGGCCGTGCTCCTCAACAGCGCCAGCTCACGCTTC
AGAACGTGAATGGCTTCACTCACATGCAGCCCATGCAAATCTATTATCCT
CTCCTGCTGCTCTCCTCCCCTCCCGTTGCCTTGCATCTCTCCACTCACAG
GGTTCCTGCAAAAR

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
noIPR	unintegrated
IPR002625	Smr_dom