CF811161 | GDV

EST Overview


Name	CF811161
Unique Name	CF811161
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	555

Libraries


Library Name	Type
LIBEST_014531 cDNA non acclimated Bluecrop library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Swissprot	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide	2011-02-10
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of CF811161 vs. DB:swissprot:display
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 6.042e-47
Identity = 89/104 (85.58%), Postives = 98/104 (94.23%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK +EG+PPPYDK KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTI+ELE KRK++SQA+YERKKQLTKLR KAEK AEEKLGS+LD+LA +KY
Sbjct:  103 ALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206

[Close]

BLAST of CF811161 vs. DB:swissprot:display
Match: R13A1_ARATH (60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.346e-46
Identity = 88/104 (84.62%), Postives = 98/104 (94.23%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK +EG+P PYDK KRMV+PDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTI+ELE KRK+++QAVYERKKQL+KLR KAEK AEEKLGS+LD+LAPVKY
Sbjct:  103 ALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVKY 206

[Close]

BLAST of CF811161 vs. DB:swissprot:display
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.296e-46
Identity = 88/104 (84.62%), Postives = 97/104 (93.27%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK +EGIPPPYDK KRMVIPDALKVLRLQ+GHKYCLLGRLSSEVGWNHYDTI+ELE KRK++SQ +YERKKQL KLR KAEK AEE+LGS+LD+LAPVKY
Sbjct:  103 ALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERLGSQLDVLAPVKY 206

[Close]

BLAST of CF811161 vs. DB:swissprot:display
Match: R13A4_ARATH (60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.916e-46
Identity = 88/104 (84.62%), Postives = 96/104 (92.31%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK YEG+P PYDK KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTI+ELE KRK+++  VYERKKQL KLR+KAEK AEEKLG++LDILAPVKY
Sbjct:  103 ALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVKY 206

[Close]

BLAST of CF811161 vs. DB:swissprot:display
Match: RL13A_LUPLU (60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.139e-45
Identity = 85/104 (81.73%), Postives = 99/104 (95.19%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK YEGIPPP+DK+KR+V+PDALKVLRLQ GHKYCLLG+LSSEVGWN+YDTI+ELE+KRK++SQ VYERKKQL KLR+KAE+ A+EKLGS+LDILAPVKY
Sbjct:  102 ALARLKVYEGIPPPFDKQKRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYERKKQLNKLRVKAEQVAQEKLGSQLDILAPVKY 205

[Close]

BLAST of CF811161 vs. DB:swissprot:display
Match: RL13A_PICMA (60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.033e-38
Identity = 75/104 (72.12%), Postives = 90/104 (86.54%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALA L+A+EG+PPPYD+KKRMVIPDALKVLRLQ GHKYCLLGRLS EVGW+H+DTI ELEEKRK K+Q  YER+KQL KLR KA + AE++L  E+++LA +KY
Sbjct:  103 ALATLRAFEGVPPPYDRKKRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLAKLRSKAVELAEKQLAPEMELLASLKY 206

[Close]

BLAST of CF811161 vs. DB:swissprot:display
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.071e-27
Identity = 62/100 (62.00%), Postives = 72/100 (72.00%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEK---LGSELD 293
            AL RLKA+EG+PPPYDK KRMVIP AL+VLRL+ G K+C+LGRL++EVGW H D +  LEEKRK KS A Y RKK L  LR KA  A   K   +  ELD
Sbjct:   97 ALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLRAKAAVAVASKTANIQKELD 196

[Close]

BLAST of CF811161 vs. DB:swissprot:display
Match: RL16_NEUCR (60S ribosomal protein L16 OS=Neurospora crassa GN=rpl-16 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.711e-25
Identity = 53/89 (59.55%), Postives = 68/89 (76.40%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAE 269
            AL RLK +EG+PPPYDKKK+MV+P AL+VLRLQ G K+C +GRLSSEVGW + D +  LEE+RK K  A YERKK   +   +A+K+A+
Sbjct:  100 ALERLKVFEGVPPPYDKKKKMVVPQALRVLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSAK 188

[Close]

BLAST of CF811161 vs. DB:swissprot:display
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 3.811e-25
Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDIL 299
            AL RLK ++GIPPPYDKKKRMV+P ALKV+RL+   K+  LGRL+ EVGW +      LEEKRK+K++  Y +KKQL +LR +AEK  E+K+G   ++L
Sbjct:   98 ALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIEKKIGKFTEVL 196

[Close]

BLAST of CF811161 vs. DB:swissprot:display
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.448e-24
Identity = 54/99 (54.55%), Postives = 72/99 (72.73%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDIL 299
            AL RLK ++GIPPPYDKKKRMV+P ALKV+RL+   K+  LGRL+ EVGW +      LEEKRK+K++  Y +KKQL +LR +AEK  E+K+    ++L
Sbjct:   98 ALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVEKKIDKYTEVL 196

[Close]

BLAST of CF811161 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0002s24410.1 ()

HSP 1 Score: 184.496 bits (467), Expect = 3.657e-47
Identity = 90/104 (86.54%), Postives = 95/104 (91.35%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQ GHKYCLLG+LSSEVGWNHYD IRELEEKRK++SQ  YERKKQL KLR KAE  AEEKLG ++DILAPVKY
Sbjct:  103 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQKGHKYCLLGKLSSEVGWNHYDIIRELEEKRKERSQVRYERKKQLNKLRAKAEVTAEEKLGPQVDILAPVKY 206

[Close]

BLAST of CF811161 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0001s32170.1 ()

HSP 1 Score: 181.03 bits (458), Expect = 4.043e-46
Identity = 84/104 (80.77%), Postives = 96/104 (92.31%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK +EG+PPPYDK KRMVIPDALKVLRLQ GHKYCLLG+LSSEVGWNHYDTI+ELE KRK+++Q +YERKKQL KLR+KAEK AEEKLG +LDI+AP+KY
Sbjct:  103 ALARLKVFEGVPPPYDKTKRMVIPDALKVLRLQPGHKYCLLGQLSSEVGWNHYDTIKELEMKRKERAQLIYERKKQLAKLRVKAEKTAEEKLGPQLDIIAPLKY 206

[Close]

BLAST of CF811161 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0017s08170.1 ()

HSP 1 Score: 177.563 bits (449), Expect = 4.470e-45
Identity = 83/104 (79.81%), Postives = 95/104 (91.35%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK +EG+PPPYDK KRMVIPDALKVLRLQ GHKYCLLG+LSSEVGWNHYDTI+ELE KRK+++Q VYERKKQL KLR+KAEK AEEKLG + +I+AP+KY
Sbjct:  103 ALARLKVFEGVPPPYDKTKRMVIPDALKVLRLQPGHKYCLLGQLSSEVGWNHYDTIKELETKRKERAQLVYERKKQLAKLRLKAEKTAEEKLGPQQEIIAPLKY 206

[Close]

BLAST of CF811161 vs. P. persica 1.0 peptide
Match: ppa011551m ()

HSP 1 Score: 182.956 bits (463), Expect = 7.558e-47
Identity = 85/104 (81.73%), Postives = 97/104 (93.27%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLKAYEG+PPPYDK KRMVIPDALKVLRLQAGHKYCLLG+LSSEVGWNHY+TI+ELE KRK+++Q  YERKKQL KLR+KAEK AEEKLG +L+I+AP+KY
Sbjct:  103 ALARLKAYEGVPPPYDKIKRMVIPDALKVLRLQAGHKYCLLGKLSSEVGWNHYETIKELENKRKERAQLAYERKKQLNKLRVKAEKVAEEKLGPQLEIIAPIKY 206

[Close]

BLAST of CF811161 vs. P. persica 1.0 peptide
Match: ppa011553m ()

HSP 1 Score: 182.185 bits (461), Expect = 1.289e-46
Identity = 87/104 (83.65%), Postives = 97/104 (93.27%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLKAYEGIPPPYDK KRMV+PDALKVLRLQ GHKYCLLG+LSSEVGWNH+DTI+ LEEKRK+++Q  YERKKQLTKLR+KAEK+AEEKLGS+LDILA V Y
Sbjct:  103 ALARLKAYEGIPPPYDKTKRMVVPDALKVLRLQKGHKYCLLGQLSSEVGWNHFDTIKALEEKRKERAQLAYERKKQLTKLRLKAEKSAEEKLGSQLDILASVTY 206

[Close]

BLAST of CF811161 vs. P. persica 1.0 peptide
Match: ppa012026m ()

HSP 1 Score: 114.39 bits (285), Expect = 3.301e-26
Identity = 52/57 (91.23%), Postives = 56/57 (98.25%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIR 173
            ALARLKAYEG+PPPYDK KRMVIPDALKVLRLQAGHKYCLLG+LSSEVGWNHY+TI+
Sbjct:  103 ALARLKAYEGVPPPYDKIKRMVIPDALKVLRLQAGHKYCLLGKLSSEVGWNHYETIK 159

[Close]

BLAST of CF811161 vs. TrEMBL
Match: D7U3K6|D7U3K6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_5.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00028661001 PE=4 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.748e-46
Identity = 91/104 (87.50%), Postives = 98/104 (94.23%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLKAYEGIPPPYDK KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELE+KRK+++Q  YERKKQLTKLR+KAEK AEEKL ++LDILA VKY
Sbjct:   37 ALARLKAYEGIPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEKKRKERAQLAYERKKQLTKLRVKAEKVAEEKLSTQLDILAAVKY 140

[Close]

BLAST of CF811161 vs. TrEMBL
Match: D7MVC9|D7MVC9_ARALY (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_683042 PE=4 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.748e-46
Identity = 91/104 (87.50%), Postives = 97/104 (93.27%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK +EGIPPPYDK KRMVIPDALKVLRLQ+GHKYCLLGRLSSEVGWNHYDTI+ELE KRK+KSQ VYERKKQL KLR KAEK AEEKLGS+LD+LAPVKY
Sbjct:  103 ALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKEKSQVVYERKKQLNKLRAKAEKVAEEKLGSQLDVLAPVKY 206

[Close]

BLAST of CF811161 vs. TrEMBL
Match: D7L5T4|D7L5T4_ARALY (60S ribosomal protein L13A OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_899096 PE=4 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 7.994e-46
Identity = 88/104 (84.62%), Postives = 98/104 (94.23%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK +EG+PPPYDK KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTI+ELE KRK++SQAVYERKKQL KLR KAEK AEEKLG++LD+L+P+KY
Sbjct:  103 ALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQAVYERKKQLNKLRAKAEKVAEEKLGTQLDVLSPIKY 206

[Close]

BLAST of CF811161 vs. TrEMBL
Match: B9RWI8|B9RWI8_RICCO (60S ribosomal protein L13a, putative OS=Ricinus communis GN=RCOM_1019840 PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.044e-45
Identity = 86/104 (82.69%), Postives = 97/104 (93.27%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK YEG+PPPYDK KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHY+TI+ELE KRK+++Q  YERKKQLTKLR+KAEK AEEKLG +LD++AP+KY
Sbjct:  103 ALARLKVYEGVPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYETIKELERKRKERAQVAYERKKQLTKLRVKAEKIAEEKLGPQLDVIAPIKY 206

[Close]

BLAST of CF811161 vs. TrEMBL
Match: B9S526|B9S526_RICCO (60S ribosomal protein L13a, putative OS=Ricinus communis GN=RCOM_1720260 PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.364e-45
Identity = 88/104 (84.62%), Postives = 99/104 (95.19%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK YEGIPPPYDK KRMVIPDALKVLRLQ+GHKYCLLGRLSSEVGWNHYDTIRELE+K+K+++Q +YERKKQL KLR+KA+K+AEEKLGS+LDILAPV Y
Sbjct:  103 ALARLKVYEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIRELEKKKKERAQVMYERKKQLNKLRVKAQKSAEEKLGSQLDILAPVTY 206

[Close]

BLAST of CF811161 vs. TrEMBL
Match: B6VC51|B6VC51_VERFO (60S ribosomal protein L13A OS=Vernicia fordii GN=RPL13aB PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.781e-45
Identity = 87/104 (83.65%), Postives = 98/104 (94.23%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK YEGIPPPYDK KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHY+TI+ LE+KRK++SQ  YERKKQLTKLR+KAEK AEEKLGS+LD+++P+KY
Sbjct:  103 ALARLKVYEGIPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYETIKALEKKRKERSQLNYERKKQLTKLRVKAEKTAEEKLGSQLDVISPIKY 206

[Close]

BLAST of CF811161 vs. TrEMBL
Match: D7SNU5|D7SNU5_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_29.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00021080001 PE=4 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.326e-45
Identity = 86/104 (82.69%), Postives = 99/104 (95.19%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLKAYEGIPPPYDK KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHY+TI+ELE+KRK++++  YERKKQL KLR+KAEKAA +KLGS+LD++AP+KY
Sbjct:   37 ALARLKAYEGIPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYETIKELEKKRKERAELAYERKKQLNKLRVKAEKAAVDKLGSQLDVIAPIKY 140

[Close]

BLAST of CF811161 vs. TrEMBL
Match: B3TLQ7|B3TLQ7_ELAGV (Ribosomal protein L13a OS=Elaeis guineensis var. tenera PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.326e-45
Identity = 88/104 (84.62%), Postives = 98/104 (94.23%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLKAYEG+PPPYDK KRMVIPDALKVLRLQAGHKYCLLGRLS EVGW+HYD IRELE+KRKQ+SQ  YER+KQL +LR+KAEKAAEEKLGS+L+ILAP+KY
Sbjct:  103 ALARLKAYEGVPPPYDKTKRMVIPDALKVLRLQAGHKYCLLGRLSKEVGWSHYDIIRELEDKRKQRSQVAYERRKQLARLRMKAEKAAEEKLGSQLNILAPLKY 206

[Close]

BLAST of CF811161 vs. TrEMBL
Match: A5BL45|A5BL45_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006449 PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.326e-45
Identity = 86/104 (82.69%), Postives = 99/104 (95.19%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLKAYEGIPPPYDK KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHY+TI+ELE+KRK++++  YERKKQL KLR+KAEKAA +KLGS+LD++AP+KY
Sbjct:  103 ALARLKAYEGIPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYETIKELEKKRKERAELAYERKKQLNKLRVKAEKAAVDKLGSQLDVIAPIKY 206

[Close]

BLAST of CF811161 vs. TrEMBL
Match: D7MML2|D7MML2_ARALY (60S ribosomal protein L13A OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_494941 PE=4 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.968e-45
Identity = 88/104 (84.62%), Postives = 97/104 (93.27%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK +EG+P PYDK KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTI+ELE KRK+++Q VYERKKQL KLR+KAEK AEEKLG++LDILAPVKY
Sbjct:  103 ALARLKVFEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAQVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVKY 206

[Close]

BLAST of CF811161 vs. Vitis vinifera peptide
Match: GSVIVT01028661001 (assembled CDS)

HSP 1 Score: 188.348 bits (477), Expect = 1.542e-48
Identity = 91/104 (87.50%), Postives = 98/104 (94.23%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLKAYEGIPPPYDK KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELE+KRK+++Q  YERKKQLTKLR+KAEK AEEKL ++LDILA VKY
Sbjct:   37 ALARLKAYEGIPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEKKRKERAQLAYERKKQLTKLRVKAEKVAEEKLSTQLDILAAVKY 140

[Close]

BLAST of CF811161 vs. Vitis vinifera peptide
Match: GSVIVT01021080001 (assembled CDS)

HSP 1 Score: 185.267 bits (469), Expect = 1.306e-47
Identity = 86/104 (82.69%), Postives = 99/104 (95.19%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLKAYEGIPPPYDK KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHY+TI+ELE+KRK++++  YERKKQL KLR+KAEKAA +KLGS+LD++AP+KY
Sbjct:   37 ALARLKAYEGIPPPYDKMKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYETIKELEKKRKERAELAYERKKQLNKLRVKAEKAAVDKLGSQLDVIAPIKY 140

[Close]

BLAST of CF811161 vs. Vitis vinifera peptide
Match: GSVIVT01018356001 (assembled CDS)

HSP 1 Score: 73.1738 bits (178), Expect = 7.231e-14
Identity = 34/47 (72.34%), Postives = 38/47 (80.85%), Query Frame = 3

Query:   69 IPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQA 209
            + D L    LQAGHKYCLLGRLS EVGWNHYDTIRELE+KRK++  A
Sbjct:   84 LQDPLAYHPLQAGHKYCLLGRLSLEVGWNHYDTIRELEKKRKERRLA 130

[Close]

BLAST of CF811161 vs. TAIR peptide
Match: AT3G24830.1 (| Symbols: | Ribosomal protein L13 family protein | chr3:9064613-9065871 FORWARD LENGTH=206)

HSP 1 Score: 186.808 bits (473), Expect = 6.499e-48
Identity = 89/104 (85.58%), Postives = 98/104 (94.23%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK +EG+PPPYDK KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTI+ELE KRK++SQA+YERKKQLTKLR KAEK AEEKLGS+LD+LA +KY
Sbjct:  103 ALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLTKLRAKAEKVAEEKLGSQLDVLASIKY 206

[Close]

BLAST of CF811161 vs. TAIR peptide
Match: AT3G07110.1 (| Symbols: | Ribosomal protein L13 family protein | chr3:2252092-2253332 FORWARD LENGTH=206)

HSP 1 Score: 185.652 bits (470), Expect = 1.448e-47
Identity = 88/104 (84.62%), Postives = 98/104 (94.23%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK +EG+P PYDK KRMV+PDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTI+ELE KRK+++QAVYERKKQL+KLR KAEK AEEKLGS+LD+LAPVKY
Sbjct:  103 ALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVKY 206

[Close]

BLAST of CF811161 vs. TAIR peptide
Match: AT4G13170.1 (| Symbols: | Ribosomal protein L13 family protein | chr4:7655133-7656542 REVERSE LENGTH=206)

HSP 1 Score: 184.882 bits (468), Expect = 2.470e-47
Identity = 88/104 (84.62%), Postives = 97/104 (93.27%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK +EGIPPPYDK KRMVIPDALKVLRLQ+GHKYCLLGRLSSEVGWNHYDTI+ELE KRK++SQ +YERKKQL KLR KAEK AEE+LGS+LD+LAPVKY
Sbjct:  103 ALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLNKLRTKAEKVAEERLGSQLDVLAPVKY 206

[Close]

BLAST of CF811161 vs. TAIR peptide
Match: AT5G48760.2 (| Symbols: | Ribosomal protein L13 family protein | chr5:19771315-19772686 REVERSE LENGTH=206)

HSP 1 Score: 184.111 bits (466), Expect = 4.212e-47
Identity = 88/104 (84.62%), Postives = 96/104 (92.31%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK YEG+P PYDK KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTI+ELE KRK+++  VYERKKQL KLR+KAEK AEEKLG++LDILAPVKY
Sbjct:  103 ALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVKY 206

[Close]

BLAST of CF811161 vs. TAIR peptide
Match: AT5G48760.1 (| Symbols: | Ribosomal protein L13 family protein | chr5:19771315-19772686 REVERSE LENGTH=206)

HSP 1 Score: 184.111 bits (466), Expect = 4.212e-47
Identity = 88/104 (84.62%), Postives = 96/104 (92.31%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIRELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK YEG+P PYDK KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTI+ELE KRK+++  VYERKKQL KLR+KAEK AEEKLG++LDILAPVKY
Sbjct:  103 ALARLKVYEGVPTPYDKIKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLNKLRVKAEKVAEEKLGAQLDILAPVKY 206

[Close]

BLAST of CF811161 vs. TAIR peptide
Match: AT3G07110.2 (| Symbols: | Ribosomal protein L13 family protein | chr3:2252092-2253332 FORWARD LENGTH=207)

HSP 1 Score: 181.03 bits (458), Expect = 3.566e-46
Identity = 88/105 (83.81%), Postives = 98/105 (93.33%), Query Frame = 3

Query:    3 ALARLKAYEGIPPPYDKKKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIR-ELEEKRKQKSQAVYERKKQLTKLRIKAEKAAEEKLGSELDILAPVKY 314
            ALARLK +EG+P PYDK KRMV+PDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTI+ ELE KRK+++QAVYERKKQL+KLR KAEK AEEKLGS+LD+LAPVKY
Sbjct:  103 ALARLKVFEGVPTPYDKIKRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKQELENKRKERAQAVYERKKQLSKLRAKAEKVAEEKLGSQLDVLAPVKY 207

The following BLAST results are available for this feature:

BLAST of CF811161 vs. DB:swissprot:display
BLAST of CF811161 vs. Populus trichocarpa peptide v2.0
BLAST of CF811161 vs. P. persica 1.0 peptide
BLAST of CF811161 vs. TrEMBL
BLAST of CF811161 vs. Vitis vinifera peptide
BLAST of CF811161 vs. TAIR peptide

BLAST of CF811161 vs. DB:swissprot:display
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
R13A2_ARATH	6.042e-47	85.58	60S ribosomal protein L13a-2 OS=Arabidopsis thalia...	[more]
R13A1_ARATH	1.346e-46	84.62	60S ribosomal protein L13a-1 OS=Arabidopsis thalia...	[more]
R13A3_ARATH	2.296e-46	84.62	60S ribosomal protein L13a-3 OS=Arabidopsis thalia...	[more]
R13A4_ARATH	3.916e-46	84.62	60S ribosomal protein L13a-4 OS=Arabidopsis thalia...	[more]
RL13A_LUPLU	1.139e-45	81.73	60S ribosomal protein L13a OS=Lupinus luteus GN=RP...	[more]
RL13A_PICMA	1.033e-38	72.12	60S ribosomal protein L13a OS=Picea mariana GN=RPL...	[more]
RL13A_CYAPA	1.071e-27	62.00	60S ribosomal protein L13a OS=Cyanophora paradoxa ...	[more]
RL16_NEUCR	1.711e-25	59.55	60S ribosomal protein L16 OS=Neurospora crassa GN=...	[more]
RL13A_BOVIN	3.811e-25	55.56	60S ribosomal protein L13a OS=Bos taurus GN=RPL13A...	[more]
RL13A_PONAB	1.448e-24	54.55	60S ribosomal protein L13a OS=Pongo abelii GN=RPL1...	[more]

BLAST of CF811161 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 3


Match Name	E-value	Identity
POPTR_0002s24410.1	3.657e-47	86.54	[more]
POPTR_0001s32170.1	4.043e-46	80.77	[more]
POPTR_0017s08170.1	4.470e-45	79.81	[more]

BLAST of CF811161 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 3


Match Name	E-value	Identity
ppa011551m	7.558e-47	81.73	[more]
ppa011553m	1.289e-46	83.65	[more]
ppa012026m	3.301e-26	91.23	[more]

BLAST of CF811161 vs. TrEMBL
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs TrEMBL)
Total hits: 10


Match Name	E-value	Identity	Description
D7U3K6\|D7U3K6_VITVI	2.748e-46	87.50	Whole genome shotgun sequence of line PN40024, sca...	[more]
D7MVC9\|D7MVC9_ARALY	2.748e-46	87.50	Predicted protein OS=Arabidopsis lyrata subsp. lyr...	[more]
D7L5T4\|D7L5T4_ARALY	7.994e-46	84.62	60S ribosomal protein L13A OS=Arabidopsis lyrata s...	[more]
B9RWI8\|B9RWI8_RICCO	1.044e-45	82.69	60S ribosomal protein L13a, putative OS=Ricinus co...	[more]
B9S526\|B9S526_RICCO	1.364e-45	84.62	60S ribosomal protein L13a, putative OS=Ricinus co...	[more]
B6VC51\|B6VC51_VERFO	1.781e-45	83.65	60S ribosomal protein L13A OS=Vernicia fordii GN=R...	[more]
D7SNU5\|D7SNU5_VITVI	2.326e-45	82.69	Whole genome shotgun sequence of line PN40024, sca...	[more]
B3TLQ7\|B3TLQ7_ELAGV	2.326e-45	84.62	Ribosomal protein L13a OS=Elaeis guineensis var. t...	[more]
A5BL45\|A5BL45_VITVI	2.326e-45	82.69	Putative uncharacterized protein OS=Vitis vinifera...	[more]
D7MML2\|D7MML2_ARALY	3.968e-45	84.62	60S ribosomal protein L13A OS=Arabidopsis lyrata s...	[more]

BLAST of CF811161 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 3


Match Name	E-value	Identity	Description
GSVIVT01028661001	1.542e-48	87.50	assembled CDS	[more]
GSVIVT01021080001	1.306e-47	82.69	assembled CDS	[more]
GSVIVT01018356001	7.231e-14	72.34	assembled CDS	[more]

BLAST of CF811161 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 6


Match Name	E-value	Identity	Description
AT3G24830.1	6.499e-48	85.58	\| Symbols: \| Ribosomal protein L13 family protein...	[more]
AT3G07110.1	1.448e-47	84.62	\| Symbols: \| Ribosomal protein L13 family protein...	[more]
AT4G13170.1	2.470e-47	84.62	\| Symbols: \| Ribosomal protein L13 family protein...	[more]
AT5G48760.2	4.212e-47	84.62	\| Symbols: \| Ribosomal protein L13 family protein...	[more]
AT5G48760.1	4.212e-47	84.62	\| Symbols: \| Ribosomal protein L13 family protein...	[more]
AT3G07110.2	3.566e-46	83.81	\| Symbols: \| Ribosomal protein L13 family protein...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005755	Ribosomal protein L13, eukaryotic/archaeal	PANTHER	PTHR11545:SF3	60S RIBOSOMAL PROTEIN L13A	coord: 1..104 score: 1.8
IPR005822	Ribosomal protein L13	GENE3D	3.90.1180.10	no description	coord: 1..51 score: 4.8
IPR005822	Ribosomal protein L13	PANTHER	PTHR11545	RIBOSOMAL PROTEIN L13	coord: 1..104 score: 1.8
IPR005822	Ribosomal protein L13	SUPERFAMILY	52161	Ribosomal protein L13	coord: 1..52 score: 1.6
None	No IPR available	SEG	seg	seg	coord: 5..25 score

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF811161 ID=CF811161; Name=CF811161; organism=Vaccinium corymbosum; type=EST; length=555bp
CGGCGCTGGCGAGGTTGAAGGCGTACGAGGGTATTCCACCGCCCTACGAC
AAAAAGAAGAGGATGGTTATTCCTGATGCTCTGAAGGTTCTGAGGCTTCA
GGCTGGACACAAGTACTGCTTGTTGGGAAGGCTCTCATCAGAAGTTGGAT
GGAACCATTATGACACCATCAGGGAGCTGGAGGAGAAGAGGAAACAGAAA
TCCCAGGCCGTGTATGAAAGGAAGAAGCAGTTGACGAAACTAAGAATCAA
GGCTGAGAAGGCTGCAGAGGAGAAGCTTGGTTCCGAATTAGATATACTTG
CTCCCGTTAAGTATTAATTTTGTTGGCAACCTCTTAGTTAAGAATTTTGT
GAGAGTTATTGGCTGAGAAGAAGCTTAGGTCCCGATTAGACTTGTTCCTG
TCAAGTTTTAAGTAGTACTTGGTTTCTTCAGACGACTTGTTTTGTTGTCA
AGTTCTTTTTTTGTGCTTGTGGTTTATCATAAATCTTATAACTTTGAGAA
GTCATCTTGTTGATGCTTGTGGTTTTGTATGATTTCTAGTTTACTCTAAA
AAAAA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0015934	large ribosomal subunit
GO:0005622	intracellular anatomical structure
GO:0005840	ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR005755	Ribosomal_uL13_euk/arc
IPR005822	Ribosomal_uL13
noIPR	unintegrated