CF811500 | GDV

EST Overview


Name	CF811500
Unique Name	CF811500
Type	EST
Organism	Vaccinium corymbosum (northern highbush blueberry)
Sequence length	565

Libraries


Library Name	Type
LIBEST_014531 cDNA non acclimated Bluecrop library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
	Vaccinium corymbosum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Vaccinium corymbosum unigene v1	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide	2011-01-18
BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide	2011-01-25
BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide	2011-02-10
InterProScan analysis for Vaccinium corymbosum unigene v1	2011-01-18

Homology

[Close]

BLAST of CF811500 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0010s02180.1 ()

HSP 1 Score: 37.7354 bits (86), Expect = 2.092e-7
Identity = 20/40 (50.00%), Postives = 24/40 (60.00%), Query Frame = 2

Query:  191 EIVFSSKXXXXXXXXXXXXXAKGEEATTELDAEMMKFRKN 310
            E+VFSSK             AKGEEAT ELDA+M KF ++
Sbjct:  658 EMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTED 697

HSP 2 Score: 34.2686 bits (77), Expect = 2.092e-7
Identity = 24/56 (42.86%), Postives = 31/56 (55.36%), Query Frame = 3

Query:   30 FRLQTGVEVTVEDIERTVTDIFEEHRDAILEQR---YQTNAVNKDELLQMVRFGAE 188
            FR  T   +  + IER    +     DA++ Q+    +   VNKDELLQMVRFGAE
Sbjct:  606 FRFCTEYTIEEKVIERAYKKLA---LDALVIQQGRLAEQKTVNKDELLQMVRFGAE 658

[Close]

BLAST of CF811500 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0010s02180.2 ()

HSP 1 Score: 37.7354 bits (86), Expect = 2.093e-7
Identity = 20/40 (50.00%), Postives = 24/40 (60.00%), Query Frame = 2

Query:  191 EIVFSSKXXXXXXXXXXXXXAKGEEATTELDAEMMKFRKN 310
            E+VFSSK             AKGEEAT ELDA+M KF ++
Sbjct:  658 EMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTED 697

HSP 2 Score: 34.2686 bits (77), Expect = 2.093e-7
Identity = 24/56 (42.86%), Postives = 31/56 (55.36%), Query Frame = 3

Query:   30 FRLQTGVEVTVEDIERTVTDIFEEHRDAILEQR---YQTNAVNKDELLQMVRFGAE 188
            FR  T   +  + IER    +     DA++ Q+    +   VNKDELLQMVRFGAE
Sbjct:  606 FRFCTEYTIEEKVIERAYKKLA---LDALVIQQGRLAEQKTVNKDELLQMVRFGAE 658

[Close]

BLAST of CF811500 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0010s02180.3 ()

HSP 1 Score: 37.7354 bits (86), Expect = 2.093e-7
Identity = 20/40 (50.00%), Postives = 24/40 (60.00%), Query Frame = 2

Query:  191 EIVFSSKXXXXXXXXXXXXXAKGEEATTELDAEMMKFRKN 310
            E+VFSSK             AKGEEAT ELDA+M KF ++
Sbjct:  658 EMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTED 697

HSP 2 Score: 34.2686 bits (77), Expect = 2.093e-7
Identity = 24/56 (42.86%), Postives = 31/56 (55.36%), Query Frame = 3

Query:   30 FRLQTGVEVTVEDIERTVTDIFEEHRDAILEQR---YQTNAVNKDELLQMVRFGAE 188
            FR  T   +  + IER    +     DA++ Q+    +   VNKDELLQMVRFGAE
Sbjct:  606 FRFCTEYTIEEKVIERAYKKLA---LDALVIQQGRLAEQKTVNKDELLQMVRFGAE 658

[Close]

BLAST of CF811500 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0008s21030.1 ()

HSP 1 Score: 37.7354 bits (86), Expect = 2.093e-7
Identity = 20/40 (50.00%), Postives = 24/40 (60.00%), Query Frame = 2

Query:  191 EIVFSSKXXXXXXXXXXXXXAKGEEATTELDAEMMKFRKN 310
            E+VFSSK             AKGEEAT ELDA+M KF ++
Sbjct:  656 EMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTED 695

HSP 2 Score: 34.2686 bits (77), Expect = 2.093e-7
Identity = 24/56 (42.86%), Postives = 31/56 (55.36%), Query Frame = 3

Query:   30 FRLQTGVEVTVEDIERTVTDIFEEHRDAILEQR---YQTNAVNKDELLQMVRFGAE 188
            FR  T   +  + IER    +     DA++ Q+    +   VNKDELLQMVRFGAE
Sbjct:  604 FRFCTEYTIEEKVIERAYKKLA---LDALVIQQGRLAEQKTVNKDELLQMVRFGAE 656

[Close]

BLAST of CF811500 vs. Populus trichocarpa peptide v2.0
Match: POPTR_0008s21030.2 ()

HSP 1 Score: 37.7354 bits (86), Expect = 2.093e-7
Identity = 20/40 (50.00%), Postives = 24/40 (60.00%), Query Frame = 2

Query:  191 EIVFSSKXXXXXXXXXXXXXAKGEEATTELDAEMMKFRKN 310
            E+VFSSK             AKGEEAT ELDA+M KF ++
Sbjct:  656 EMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTED 695

HSP 2 Score: 34.2686 bits (77), Expect = 2.093e-7
Identity = 24/56 (42.86%), Postives = 31/56 (55.36%), Query Frame = 3

Query:   30 FRLQTGVEVTVEDIERTVTDIFEEHRDAILEQR---YQTNAVNKDELLQMVRFGAE 188
            FR  T   +  + IER    +     DA++ Q+    +   VNKDELLQMVRFGAE
Sbjct:  604 FRFCTEYTIEEKVIERAYKKLA---LDALVIQQGRLAEQKTVNKDELLQMVRFGAE 656

[Close]

BLAST of CF811500 vs. P. persica 1.0 peptide
Match: ppa000594m ()

HSP 1 Score: 37.7354 bits (86), Expect = 1.483e-7
Identity = 20/40 (50.00%), Postives = 24/40 (60.00%), Query Frame = 2

Query:  191 EIVFSSKXXXXXXXXXXXXXAKGEEATTELDAEMMKFRKN 310
            E+VFSSK             AKGEEAT ELDA+M KF ++
Sbjct:  679 EMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTED 718

HSP 2 Score: 34.2686 bits (77), Expect = 1.483e-7
Identity = 24/56 (42.86%), Postives = 31/56 (55.36%), Query Frame = 3

Query:   30 FRLQTGVEVTVEDIERTVTDIFEEHRDAILEQR---YQTNAVNKDELLQMVRFGAE 188
            FR  T   +  + IER    +     DA++ Q+    +   VNKDELLQMVRFGAE
Sbjct:  627 FRFCTEYTIEEKVIERAYKKLA---LDALVIQQGRLAEQKTVNKDELLQMVRFGAE 679

[Close]

BLAST of CF811500 vs. Vitis vinifera peptide
Match: GSVIVT01017791001 (assembled CDS)

HSP 1 Score: 37.7354 bits (86), Expect = 1.270e-7
Identity = 20/40 (50.00%), Postives = 24/40 (60.00%), Query Frame = 2

Query:  191 EIVFSSKXXXXXXXXXXXXXAKGEEATTELDAEMMKFRKN 310
            E+VFSSK             AKGEEAT ELDA+M KF ++
Sbjct:  679 EMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTED 718

HSP 2 Score: 34.2686 bits (77), Expect = 1.270e-7
Identity = 24/56 (42.86%), Postives = 31/56 (55.36%), Query Frame = 3

Query:   30 FRLQTGVEVTVEDIERTVTDIFEEHRDAILEQR---YQTNAVNKDELLQMVRFGAE 188
            FR  T   +  + IER    +     DA++ Q+    +   VNKDELLQMVRFGAE
Sbjct:  627 FRFCTEYTIEEKVIERAYKKLA---LDALVIQQGRLAEQKTVNKDELLQMVRFGAE 679

[Close]

BLAST of CF811500 vs. TAIR peptide
Match: AT5G18620.2 (| Symbols: CHR17 | chromatin remodeling factor17 | chr5:6196190-6202058 REVERSE LENGTH=1072)

HSP 1 Score: 37.7354 bits (86), Expect = 3.997e-7
Identity = 20/40 (50.00%), Postives = 24/40 (60.00%), Query Frame = 2

Query:  191 EIVFSSKXXXXXXXXXXXXXAKGEEATTELDAEMMKFRKN 310
            E+VFSSK             AKGEEAT ELDA+M KF ++
Sbjct:  669 EMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTED 708

HSP 2 Score: 33.113 bits (74), Expect = 3.997e-7
Identity = 23/56 (41.07%), Postives = 31/56 (55.36%), Query Frame = 3

Query:   30 FRLQTGVEVTVEDIERTVTDIFEEHRDAILEQR---YQTNAVNKDELLQMVRFGAE 188
            FR  T   +  + IER    +     DA++ Q+    +   VNKDELLQMVR+GAE
Sbjct:  617 FRFCTENAIEAKVIERAYKKLA---LDALVIQQGRLAEQKTVNKDELLQMVRYGAE 669

[Close]

BLAST of CF811500 vs. TAIR peptide
Match: AT5G18620.1 (| Symbols: CHR17 | chromatin remodeling factor17 | chr5:6196190-6202058 REVERSE LENGTH=1069)

HSP 1 Score: 37.7354 bits (86), Expect = 3.997e-7
Identity = 20/40 (50.00%), Postives = 24/40 (60.00%), Query Frame = 2

Query:  191 EIVFSSKXXXXXXXXXXXXXAKGEEATTELDAEMMKFRKN 310
            E+VFSSK             AKGEEAT ELDA+M KF ++
Sbjct:  669 EMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTED 708

HSP 2 Score: 33.113 bits (74), Expect = 3.997e-7
Identity = 23/56 (41.07%), Postives = 31/56 (55.36%), Query Frame = 3

Query:   30 FRLQTGVEVTVEDIERTVTDIFEEHRDAILEQR---YQTNAVNKDELLQMVRFGAE 188
            FR  T   +  + IER    +     DA++ Q+    +   VNKDELLQMVR+GAE
Sbjct:  617 FRFCTENAIEAKVIERAYKKLA---LDALVIQQGRLAEQKTVNKDELLQMVRYGAE 669

[Close]

BLAST of CF811500 vs. TAIR peptide
Match: AT3G06400.3 (| Symbols: CHR11 | chromatin-remodeling protein 11 | chr3:1941066-1946700 FORWARD LENGTH=1057)

HSP 1 Score: 37.7354 bits (86), Expect = 5.175e-7
Identity = 20/40 (50.00%), Postives = 24/40 (60.00%), Query Frame = 2

Query:  191 EIVFSSKXXXXXXXXXXXXXAKGEEATTELDAEMMKFRKN 310
            E+VFSSK             AKGEEAT ELDA+M KF ++
Sbjct:  664 EMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTED 703

HSP 2 Score: 32.7278 bits (73), Expect = 5.175e-7
Identity = 23/56 (41.07%), Postives = 31/56 (55.36%), Query Frame = 3

Query:   30 FRLQTGVEVTVEDIERTVTDIFEEHRDAILEQR---YQTNAVNKDELLQMVRFGAE 188
            FR  T   +  + IER    +     DA++ Q+    +   VNKDELLQMVR+GAE
Sbjct:  612 FRFCTESAIEEKVIERAYKKLA---LDALVIQQGRLAEQKTVNKDELLQMVRYGAE 664

[Close]

BLAST of CF811500 vs. TAIR peptide
Match: AT3G06400.2 (| Symbols: CHR11 | chromatin-remodeling protein 11 | chr3:1941066-1946700 FORWARD LENGTH=1056)

HSP 1 Score: 37.7354 bits (86), Expect = 5.175e-7
Identity = 20/40 (50.00%), Postives = 24/40 (60.00%), Query Frame = 2

Query:  191 EIVFSSKXXXXXXXXXXXXXAKGEEATTELDAEMMKFRKN 310
            E+VFSSK             AKGEEAT ELDA+M KF ++
Sbjct:  664 EMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTED 703

HSP 2 Score: 32.7278 bits (73), Expect = 5.175e-7
Identity = 23/56 (41.07%), Postives = 31/56 (55.36%), Query Frame = 3

Query:   30 FRLQTGVEVTVEDIERTVTDIFEEHRDAILEQR---YQTNAVNKDELLQMVRFGAE 188
            FR  T   +  + IER    +     DA++ Q+    +   VNKDELLQMVR+GAE
Sbjct:  612 FRFCTESAIEEKVIERAYKKLA---LDALVIQQGRLAEQKTVNKDELLQMVRYGAE 664

[Close]

BLAST of CF811500 vs. TAIR peptide
Match: AT3G06400.1 (| Symbols: CHR11 | chromatin-remodeling protein 11 | chr3:1941066-1946700 FORWARD LENGTH=1055)

HSP 1 Score: 37.7354 bits (86), Expect = 5.175e-7
Identity = 20/40 (50.00%), Postives = 24/40 (60.00%), Query Frame = 2

Query:  191 EIVFSSKXXXXXXXXXXXXXAKGEEATTELDAEMMKFRKN 310
            E+VFSSK             AKGEEAT ELDA+M KF ++
Sbjct:  664 EMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTED 703

HSP 2 Score: 32.7278 bits (73), Expect = 5.175e-7
Identity = 23/56 (41.07%), Postives = 31/56 (55.36%), Query Frame = 3

Query:   30 FRLQTGVEVTVEDIERTVTDIFEEHRDAILEQR---YQTNAVNKDELLQMVRFGAE 188
            FR  T   +  + IER    +     DA++ Q+    +   VNKDELLQMVR+GAE
Sbjct:  612 FRFCTESAIEEKVIERAYKKLA---LDALVIQQGRLAEQKTVNKDELLQMVRYGAE 664

The following BLAST results are available for this feature:

BLAST of CF811500 vs. Populus trichocarpa peptide v2.0
BLAST of CF811500 vs. P. persica 1.0 peptide
BLAST of CF811500 vs. Vitis vinifera peptide
BLAST of CF811500 vs. TAIR peptide

BLAST of CF811500 vs. Populus trichocarpa peptide v2.0
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Populus trichocarpa v2.0 peptide)
Total hits: 5


Match Name	E-value	Identity
POPTR_0010s02180.1	2.092e-7	50.00	[more]
POPTR_0010s02180.2	2.093e-7	50.00	[more]
POPTR_0010s02180.3	2.093e-7	50.00	[more]
POPTR_0008s21030.1	2.093e-7	50.00	[more]
POPTR_0008s21030.2	2.093e-7	50.00	[more]

BLAST of CF811500 vs. P. persica 1.0 peptide
Analysis Date: 2011-01-18 (BLAST: Vaccinium corymbosum unigene v1 vs Ppersica v1.0 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
ppa000594m	1.483e-7	50.00		[more]

BLAST of CF811500 vs. Vitis vinifera peptide
Analysis Date: 2011-01-25 (BLAST: Vaccinium corymbosum unigene v1 vs Vitis vinifera peptide)
Total hits: 1


Match Name	E-value	Identity	Description
GSVIVT01017791001	1.270e-7	50.00	assembled CDS	[more]

BLAST of CF811500 vs. TAIR peptide
Analysis Date: 2011-02-10 (BLAST: Vaccinium corymbosum unigene v1 vs TAIR 10 peptide)
Total hits: 5


Match Name	E-value	Identity	Description
AT5G18620.2	3.997e-7	50.00	\| Symbols: CHR17 \| chromatin remodeling factor17 \|...	[more]
AT5G18620.1	3.997e-7	50.00	\| Symbols: CHR17 \| chromatin remodeling factor17 \|...	[more]
AT3G06400.3	5.175e-7	50.00	\| Symbols: CHR11 \| chromatin-remodeling protein 11...	[more]
AT3G06400.2	5.175e-7	50.00	\| Symbols: CHR11 \| chromatin-remodeling protein 11...	[more]
AT3G06400.1	5.175e-7	50.00	\| Symbols: CHR11 \| chromatin-remodeling protein 11...	[more]

InterPro

Analysis Name: InterProScan analysis for Vaccinium corymbosum unigene v1
Date Performed: 2011-01-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007639	Glutaminyl-tRNA synthetase, class Ic, non-specific RNA-binding region part 1	PFAM	PF04558	tRNA_synt_1c_R1	coord: 7..41 score: 2.4
None	No IPR available	SEG	seg	seg	coord: 1..16 score: NAcoord: 22..27 score: NAcoord: 90..101 score: NAcoord: 105..117 score

Properties


Property Name	Value
Singlet in analysis	Vaccinium corymbosum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF811500 ID=CF811500; Name=CF811500; organism=Vaccinium corymbosum; type=EST; length=565bp
CTTTTTCCTAGAGGTCTGAGAATTGAAAGTTCAGACTGCAAACAGGAGTT
GAGGTCACCGTAGAAGATATTGAACGCACTGTAACTGACATATTTGAAGA
GCATAGGGATGCAATTTTGGAGCAGCGCTATCAGACAAATGCTGTAAACA
AAGATGAGCTGCTGCAAATGGTGAGGTTTGGTGCTGAAAAGAAATAGTTT
TCAGTTCAAAGGACATTACAATCACTGATGAGGATATAGAGCGGATCATT
GCTAAAGGAGAAGAGGCAACCACTGAACTTGATGCTGAGATGATGAAATT
TAGGAAAAATGAGTCGCTCAAGTAGAACTCTATGTTAGCAATCTTCCTGG
TCATATTCGTGAACGGGGAGTCGAAGATATCTTTTACAAGGTGCTGAAGA
ATTGAGAGATCAATCAGCAGTGTTCTGTCTTGGTGGTGTTTTACAGGTTC
TCTCTCCTTTCTGTGAACACGGCCAAACAACGACGAAGATGAGGAAGAAA
ATTGAGATCTCCATAAGAAGAGGATAGTGAGGAAGAAGAAGATGATTTGA
AGCCAAAATAANNGT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0004812	aminoacyl-tRNA ligase activity
GO:0005524	ATP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005737	cytoplasm

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation
GO:0006418	tRNA aminoacylation for protein translation

Vocabulary: **INTERPRO**
Term	Definition
IPR007639	Gln-tRNA-synth_Ib_RNA-bd_N
noIPR	unintegrated